LOC110530961 (dhx9)


Basic Information

Item Value
gene id LOC110530961
gene name dhx9
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 62165849 ~ 62185180 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110530961
ttagagctgTCATAAGACTATCTtgttaatatattattatttgtaggTCAGTCACGGCCAATTAACCCTGCTCCAACAGATATCCACAAATCCGCCATGGCAGACATCAAGAACTTCCTGTATGCTTGGTGTGGGAAGAAGAAACTTACACCCAGCTATGACATTCGAGCAGCTGGAAACAAAAACCGGCAGAAGTTTCTGCGTGAGGTTCTTATTGAGGGATTCAACTACACTGGAATGGGAAACTCCACCAATAAGAAGGATTCCCAGGCAAATGCTGCCAGAGACTTAGTCAATTATCTTGTCGGAGCTGGAGAAATGAATGCAGCTGAAGTCCAAGCCCTTGGGGTAAGTGTACCTGACTTCAGTGAGCCTAGCTGTGGGGGAGCAGGGGGTGATAAAGGCAACGTCGGCTTTGGAAGTCTTCCTCCAAGTGCACCTCACCTGGTTGTGAAAGCTGAGAAagCGAATGCACCTTCTGGACCATTCCCAAGTGTCACTGGTTTGGGATATTCGGGAGGTGATAGTGGAGGCAATTATTCTGGAGGTGCTGGAAACAGCAATGCTCCATGGGATCGTGGGGCCAATCTAAATGACTACTACTCAAAGAGAGATGAGCAAGAGgcacaggcaACTCTGGAGTCTGAGGAGGTAGATCTGAATGCAGGACTCCATGGCAACTGGACTTTAGAGAATGCCAAAGCCCGTCTGAACCAGTTTTTCCAGAAGGAGAAGAATCAAACCGATTACAAATACAGCCAAGTTGGGCCTGACCACAACAGGAGCTTTATTGCTGAGATGCAGTTGTTTGTTAGACAGCTTGGTAGAAGGAAGTACCGAATAATTGCCCGCGAGCATGGCTCTAACAAGAAGCTGGCGGCCCAGTCCTCTGCGCTGTCTATCGTCCGTCAACTTTACCATCTGGGTGTCATTGAGCCTCATACTGACATGACTAAGAAGAAAGAGGGGGAAATTTTGGAAGCTTTTGAGGTGAATGTGGTGGATGATCTGCAACATCAGCTAAAGAGTATTGCCCAAGAACTGGGTGTTGTAATTCCACCTCCAGTAATTAAACATTTTGCCTGTCTCCCGCCACCTGATCCAAGTACCCCAGTGTCCCTAATCCAAGGGAAGATGGCTGTGTTTGGGCCCTCCCAGAGACAAACCTTGGCCGGGGTGGTGCCCTGGTCCCCCTCCGCAAGTTAACTGGAACCCCTGGACCAGCAGCAATATCGACGAGGGCCCACTAGCATTTTGCACCCCAGAGCAAATCAGCGCTGACCTCCAACATGAGCTGACCTGTCAATTGGAACAAGATCAAAGCTTTCTGAAGGTCATTGGGGAGTGAGATAGGCTTCCAGTGAAGAATTTTGAGAGGGGGAACATGTCTGCTGGTCAGGGTAACTCAGTGGTGATCATTCGAGGGGCGACTGGCTGTGGCAAAACCACCCAGGTTCCCCAGTACATCCTGGATCAGTTCATCAAGAGTGGGAGGGCGTCCGACTGTAACATTATTGTAACCCAGCCCCGGCGTATCAGTGCAGTGTCTGTTGCAGAGCTTGTTTCctacgagagaggagagaatgtcgGTAAGACCTGTGGGTACAGTGTCCGCTTTGAATCCATCCTCCCACGGCCCCATGCCAGCATCATGTTCTGCACTGTTGGTGTGTTATTGCGGAAGCTGGAAACAGGTATTCGTGGGATCAGCCATGTGATTGTGGATGAAATCCACGAGAGAGACCTCAATACTGACTTCCTCACGTGGTGCTGAAGGATGTGGTCCAGACATACCCAGAAGTGCGCATCATACTCATGTCTGCCACCATCGAAACCACCATGTTCAGAGAGTACTATTTCAACTGCCCCGTCATCGAGGTGTTTGGCCGCACATTCCCAGTACAATAGTACTTTTTAGAagattgcattcagatgactcatTTTATTCCTCCTCCGAAtgatagaaagaggaaggaggagatgaaGATTGGATAATAATTTGTCCAATTTTCACCCCAGAGACAAAGCGCTCCATGGCCCAGATGAATGAGAAGGAGACTCCCTTTGGGCTGGTGGAGGCCCTGCTGAAGTACATTGAGACCCTCCAGGTGGCCGGGGCCGTGCTCGTCTTCCTGCCCGGCTGGAACCTCATCTACTCCATGCAGAAACACCTGGAGATGAACCCACACTTTGGAAGTCAACGGTACCTGATTCTACTGCTCCACTCTCAGATCCCCAGAGAGGAGCAAAGAAGTGTATTTGAGCCTGTGCCTGAAAACATCACcatgGTGATCTTGTCAACAAACATCGCAGAGACCATTATTACCATCAATGATGTAGTATACGTCATCAACTCTTGCAAgcAGAAAGTGACACTGTTCACGTCTCACAACAACATGACCAACTACGCCATGGTCTGGGGCTCTGTTTTATCTGTGTAGCAGAGCACACTTTGACAAACTGGAGACCCATATGACCCCTGAGATATTCCGTACTCCTCTCCATGAGGTAGCCCTGAGCATCAAGCTGCTGAGACTAGGATCCATTGGCCATTTCCTTTCCAAGGCCATCGAGCCCCCTCCCCTGGACGCGGTTATCGAGGCAGAACACACACTGAGAGAACTGGATGCCTTGGACACTAATGACGAGTTGACTCCACTTGGTCGGATCCTTGCAAAGCTTCTAATCGAGCCACGGCTGGGAAAGATGATGATTATGCGCTGCATTTTCAaGTTTGGAGATGCAGTGTGCACCATCTCCGCAGCGTCATGCTTCCCAGAGCCCTTCATCAACGATGGCAAGCGCTTGCGCTACGTGCACCGTAACTTTGCTGGCACCCGCTTCTCAGACCACGTGGCACTGCTGTCAGTCTTCCAGGCTTGGGACGAGGTGAAATTTGGAGGTGAGGATGCGGAGTGCAGATTCTGTGAACACGAAGCTCAACATGTCCACACTGAGGATGACCTGGGAGGCCAAAGTGCAGCTGAAGGAGAGCCTCATCAACTCTGGCTTCCCTGAGGagtgtttgATGACACAGATGTTCAACAACGTTGGACCTGACCGCAACCTTGACGTGGTCATCTCTCTCCTGACATACGGCTCCTATCCCAACGTGTGCTACCACAAGGAGAAGAGGAAGATTCTCACCACTGAGGGGCGCAATGCCCTCATCCATAAATGCTCTATCAACTGCCCCTTCAGCAGCCAGGACATGACCTACCCATCACCGTTCTTTGTCTTTAGCGAAAAGATCCGGACTCGAATGACACTAGTCAGCCCACTCCAGCTGATCTTATTTGCCGCCAAGAAAATCACATCAAACGGGGAAATCATTGAGCTGGATGATTGGATCAAACTGAAGATACCTCATGACGTGGCTGGTTGCATAGCTGCATTGAGGGCTGGAATGGAGGCCCTTGTTGTGGAAGTCATCAAAGACCCTGAGTACATCAGACAGCTGGACCCCACAAACGAGCGCATGCTCAACATCATCCGCCAAATCTCCAAGCCCTCCGCATCCGGGCTTAACCTCAAGGTCAACAATCTACATTTTGGCGTTGGTCCACGTCCTCCTAAAATGGGCAGGTTTGATGGAAGTGGAGGAGgggtacagaggaggaggaagtaaCAGAGGAAGCGGTGGCGGAGTGTAGGTGGTGGATACAGGGGGTGTCAGGGATAATAGAGCAGGTACATGTTTGGATGTTGTATATAAAAATGCATAATATGATGTTTGTTTATTTGACTGTAATATTAGAAAAATGTCTACGGATGTTTTTGTTTTAGTTGTGCATTGTGtgacaccccaccaccaccactttgAAGTCAAGGTTATTGGCCCACATataataatttaacaattttaagTCTTTGTTATATAGATCATCCATTCTCTGTATTATCTCTTAGACTGACTCATTGGATTAGTTAGCGTTAAATATTTAATTTCATGAGCTTCATTTTGTCAGTGATTTATAACTTAAAGATGATCATTAAAGAAATCAATTCAATAAAATACTTTTCTCCAA
>TU831229
ccattgttagagctgTCATAAGACTATCTtgttaatatattattatttgtaggTCAGTCACGGCCAATTAACCCTGCTCCAACAGATATCCACAAATCCGCCATGGCAGACATCAAGAACTTCCTGTATGCTTGGTGTGGGAAGAAGAAACTTACACCCAGCTATGACATTCGAGCAGCTGGAAACAAAAACCGGCAGAAGTTTCTGCGTGAGGTTCTTATTGAGGGATTCAACTACACTGGAATGGGAAACTCCACCAATAAGAAGGATTCCCAGGCAAATGCTGCCAGAGACTTAGTCAATTATCTTGTCGGAGCTGGAGAAATGAATGCAGCTGAAGTCCAAGCCCTTGGGGTAAGTGTACCTGACTTCAGTGAGCCTAGCTGTGGGGGAGCAGGGGGTGATAAAGGCAACGTCGGCTTTGGAAGTCTTCCTCCAAGTGCACCTCACCTGGTTGTGAAAGCTGAGAAagACTCTGGAGTCTGAGGAGGTAGATCTGAATGCAGGACTCCATGGCAACTGGACTTTAGAGAATGCCAAAGCCCGTCTGAACCAGTTTTTCCAGAAGGAGAAGAATCAAACCGATTACAAATACAGCCAAGTTGGGCCTGACCACAACAGAGATAATTGCCCGCGAGCATGGCTCTAACAAGAAGCTGGCGGCCCAGTCCTCTGCGCTGTCTATCGTCCGTCAACTTTACCATCTGGGTGTCATTGAGCCTCATACTGACATGACTAAGAAGAAAGAGGGGGAAATTTTGGAAGCTTTTGAGGTGAATGTGGTGGATGATCTGCAACATCAGCTAAAGAGTATTGCCCAAGAACTGGGTGTTGTAATTCCACCTCCATACCCCAGTGTCCCTAATCCAAGGGAAGATGGCTGTGTTTGGGCCCTCCCAGAGACAAACCTTGGCCGGGGTGGTGCCCTGGTCCCCCTCCGCAAGTTAACTGGAACCCCTGGACCAGCAGCAATATCGACGAGGGCCCACTAGCATTTTGCACCCCAGAGCAAATCAGCGCTGACCTCCAACATGAGCTGACCTGTCAATTGGAACAAGATCAAAGCTTTCTGAAGGTCATTGGGGAGTGAGATAGGCTTCCAGTGAAGAATTTTGAGAGGGGGAACATGTCTGCTGGTCAGGGTAACTCAGTGGTGATCATTCGAGGGGCGACTGGCTGTGGCAAAACCACCCAGGTTCCCCAGTACATCCTGGATCAGTTCATCAAGAGTGGGAGGGCGTCCGACTGTAACATTATTGTAACCCAGCCCCGGCGTATCAGTGCAGTGTCTGTTGCAGAGCTTGTTTCctacgagagaggaga

Function

symbol description
dhx9 Predicted to enable 3'-5' DNA helicase activity and RNA binding activity. Acts upstream of or within response to virus. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleolus. Orthologous to human DHX9 (DExH-box helicase 9).

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110530961 False 4028 mRNA 0.50 26 62165849 62185174
TU831229 True 1323 TUCP 0.50 10 62180687 62185180

Neighbor

gene id symbol gene type direction distance location
LOC110530303 LOC106569067 coding downstream 20224 62067997 ~ 62145625 (-)
LOC110530302 LOC106569065 coding downstream 101828 62049903 ~ 62064021 (-)
LOC110530300 NA coding downstream 131856 62004172 ~ 62033993 (-)
LOC110530281 bhlhe22 coding downstream 824638 61340002 ~ 61341211 (-)
LOC110529124 dnajc5b coding downstream 926078 61233873 ~ 61239771 (-)
LOC110530304 LOC106569068 coding upstream 568 62185742 ~ 62275234 (-)
LOC110530306 LOC106569070 coding upstream 114723 62299897 ~ 62312493 (-)
LOC110530307 LOC106569071 coding upstream 328130 62513304 ~ 62607766 (-)
LOC110530309 LOC106569072 coding upstream 697776 62882950 ~ 62967485 (-)
LOC110530312 tnn coding upstream 1023858 63209032 ~ 63239830 (-)
G731861 NA non-coding downstream 22896 62139885 ~ 62142953 (-)
G731764 NA non-coding downstream 118583 62045035 ~ 62048119 (-)
G731765 NA non-coding downstream 177849 61941991 ~ 61988000 (-)
G731726 NA non-coding downstream 291933 61870180 ~ 61873916 (-)
G731629 LOC106569104 non-coding downstream 294294 61710897 ~ 61871555 (-)
G731994 NA non-coding upstream 176519 62361693 ~ 62362031 (-)
G732041 NA non-coding upstream 213065 62398239 ~ 62398459 (-)
G732140 NA non-coding upstream 285747 62470921 ~ 62471148 (-)
G732337 NA non-coding upstream 429637 62614811 ~ 62615105 (-)
G732910 NA non-coding upstream 679440 62864614 ~ 62865918 (-)
LOC110530228 LOC106569007 other downstream 4301972 57858233 ~ 57864165 (-)
G726900 NA other downstream 4319160 57820047 ~ 57846689 (-)
G726885 NA other downstream 4354427 57805388 ~ 57811422 (-)
chd7 LOC106599585 other downstream 4860323 57224058 ~ 57305576 (-)
G735880 NA other upstream 2805127 64990301 ~ 65040241 (-)
G736216 NA other upstream 3332993 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 3915922 66101096 ~ 66101627 (-)
LOC110530385 LOC106569212 other upstream 4008480 66192359 ~ 66210028 (-)
G737449 LOC106569204 other upstream 4374022 66559196 ~ 66560517 (-)

Expression


Co-expression Network