LOC110530306 (LOC106569070)


Basic Information

Item Value
gene id LOC110530306
gene name LOC106569070
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 62299897 ~ 62312493 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613235.2
CCTCATGGTCTGTTGAGTCTCGGTCTTCGGTGTGTATCAACGTATTctgtgtttattttgtttatgcTTCACAATGCTAACCGGAATGTAGGTAGCAGCCATCTGGAAATGAGCACTGAGGAGACCCCACGCAACAATGCCTTGGCACAACGAAGGAGCAAGAGTTACAGGCAATCAATGCGAAGCTGTGTTGAAGCAACTCATCTGACATACACATCAGGCCTTTTGACAGCTCTAAGAATACCAAGAAGTAGAAAGGCTCCAAAGTCATGTGATATCACAAAACAGGTTGACCCAGACCAAGTAGCACTTCTGGTGAAGAAGGAATGGCAGCTGTCGTATGTCACACCTTTGTACCAGTTCAGACACACTCAGTTGAAATCCTACTCAAAGCAACTATCAGCTTTCATGGTATCAGAGAAGCAACAGGGCCTGGCGATTGAAGTTGGTCAGGAGTTGGGCTTCAAGGTCAATTTTTCTGTGGTCCTTGGGTTGGCAGAGACGGATAAAGATGCTGAGACAGTTTTCATACAGATTCTCTCCAAACAAGTGTTTTCTGCAAAAGATGCTGCTCCGAAGGTTGTGTGGAGTGGCTGGCTGACCTGCGTCAACGGTGACTTGGATTATCTCCGATCACTACCCCTGGAATTTGTCAGTTTGCCTTTGTTCTGCACCAGAGGACCAGAATCGCTCACAGTGTTGGTCAAAACCTGGTTTGAAAAGACATTTGACTGTTGCTTCGGCCCTCTTGGTATCAACTCTACCAACCTCCAGTGGCTCGCATCCCTATGGACTGGGTGCCACCCCACCATCAACATCCAGTACCTGAAACTGGTCTGGACTCTCCCAACACTACCCCCTATGGACGTTACGTACACCGTCCACCCACAAGATGCCTGGGAGCTTTGGGACAGCATGCGGCAGGTTGACACGACAGAGGACAGCATCAGCATTGATGAGGTCACCGGGTTCATCAAAGGGCTGCAGTCACACTTCTTCAGGCACTTCAGGATAGACTTGTCCGCTGGGTCACTGATGCAGATCTCCACGGCTTTGGGTTCTTCTCACCATAGTGGAAAAATCAAGATTGCAAGCCCTAATTACATCCCCACCATCCTGCAACTGCTGACAGAATGTGCTCTTCTGAAGATGCCAATCTAAGCAGACTGTCTTTGACATCACAAAtcaatgtttgtttgtgttttgtaAAATACCTGTATAACCCCAAAATTACTGTCCATATGAAATTAAACCATTTTACTTTTTTTAATATATTCATGTATTGTATGAAAAGGCAAATGCATACATTTCAAAATAGCTACGCTTTTGCTGATTGTGTATTGCCATTGTTCTGTGGTTTCAGTCACTCTAGATATTATTCACTACAAGCGCAATAGTGTAGAAGTAAATGTGTTACAGCTTAAACTTGCAAATGTTGGTTTTGTCAGTGTGGGGTGATAGTTGATTAATCAGGTTTGATACATGGTAAACCGTCAAGTAACTTGGGCAGTTCTGAAGATATCATTGTTTCAGTCCAGATACAGTAATTGGCAAACTGTAAGAAAGCCTGGTGATTTCCTAAACGGTAGAGATGTAACAACCAAAAAGAATAGTACCTGTAAATACATTTCCATTTTCAAAAACAATTGTTTGATGAGCTTAAAGTTTGAAATAAAGTGTTTTTATTAACA
>XM_036985938.1
tatttttcagtgacatgTTTTTGGCAACCTTCTTCTATTACACACGGGTGTTCAGAACATGCACATGCTAGATGGCTAATTAACACAGGCGGTAAAATACCATGGAGATATGGCCGTGAGGGAACTGTAACACTATAAAAGTGTGTATCAATCACTGAGGAGACCCCACGCAACAATGCCTTGGCACAACGAAGGAGCAAGAGTTACAGGCAATCAATGCGAAGCTGTGTTGAAGCAACTCATCTGACATACACATCAGGCCTTTTGACAGCTCTAAGAATACCAAGAAGTAGAAAGGCTCCAAAGTCATGTGATATCACAAAACAGGTTGACCCAGACCAAGTAGCACTTCTGGTGAAGAAGGAATGGCAGCTGTCGTATGTCACACCTTTGTACCAGTTCAGACACACTCAGTTGAAATCCTACTCAAAGCAACTATCAGCTTTCATGGTATCAGAGAAGCAACAGGGCCTGGCGATTGAAGTTGGTCAGGAGTTGGGCTTCAAGGTCAATTTTTCTGTGGTCCTTGGGTTGGCAGAGACGGATAAAGATGCTGAGACAGTTTTCATACAGATTCTCTCCAAACAAGTGTTTTCTGCAAAAGATGCTGCTCCGAAGGTTGTGTGGAGTGGCTGGCTGACCTGCGTCAACGGTGACTTGGATTATCTCCGATCACTACCCCTGGAATTTGTCAGTTTGCCTTTGTTCTGCACCAGAGGACCAGAATCGCTCACAGTGTTGGTCAAAACCTGGTTTGAAAAGACATTTGACTGTTGCTTCGGCCCTCTTGGTATCAACTCTACCAACCTCCAGTGGCTCGCATCCCTATGGACTGGGTGCCACCCCACCATCAACATCCAGTACCTGAAACTGGTCTGGACTCTCCCAACACTACCCCCTATGGACGTTACGTACACCGTCCACCCACAAGATGCCTGGGAGCTTTGGGACAGCATGCGGCAGGTTGACACGACAGAGGACAGCATCAGCATTGATGAGGTCACCGGGTTCATCAAAGGGCTGCAGTCACACTTCTTCAGGCACTTCAGGATAGACTTGTCCGCTGGGTCACTGATGCAGATCTCCACGGCTTTGGGTTCTTCTCACCATAGTGGAAAAATCAAGATTGCAAGCCCTAATTACATCCCCACCATCCTGCAACTGCTGACAGAATGTGCTCTTCTGAAGATGCCAATCTAAGCAGACTGTCTTTGACATCACAAAtcaatgtttgtttgtgttttgtaAAATACCTGTATAACCCCAAAATTACTGTCCATATGAAATTAAACCATTTTACTTTTTTTAATATATTCATGTATTGTATGAAAAGGCAAATGCATACATTTCAAAATAGCTACGCTTTTGCTGATTGTGTATTGCCATTGTTCTGTGGTTTCAGTCACTCTAGATATTATTCACTACAAGCGCAATAGTGTAGAAGTAAATGTGTTACAGCTTAAACTTGCAAATGTTGGTTTTGTCAGTGTGGGGTGATAGTTGATTAATCAGGTTTGATACATGGTAAACCGTCAAGTAACTTGGGCAGTTCTGAAGATATCATTGTTTCAGTCCAGATACAGTAATTGGCAAACTGTAAGAAAGCCTGGTGATTTCCTAAACGGTAGAGATGTAACAACCAAAAAGAATAGTACCTGTAAATACATTTCCATTTTCAAAAACAATTGTTTGATGAGCTTAAAGTTTGAAATAAAGTGTTTTTATTAACA
>XM_021613234.2
AAAATGTTGAATGATGCTGTACTTGACTACATTTCCTTATCAAGATTCCAGTTGCATCATGGGAAAGCGCGAAGTTCAAATCCACTTCCTGACTTTGCCGGTGTTATTTTTTTCAGTGATGGAGGAACGAAAAAGCACTGAGGAGACCCCACGCAACAATGCCTTGGCACAACGAAGGAGCAAGAGTTACAGGCAATCAATGCGAAGCTGTGTTGAAGCAACTCATCTGACATACACATCAGGCCTTTTGACAGCTCTAAGAATACCAAGAAGTAGAAAGGCTCCAAAGTCATGTGATATCACAAAACAGGTTGACCCAGACCAAGTAGCACTTCTGGTGAAGAAGGAATGGCAGCTGTCGTATGTCACACCTTTGTACCAGTTCAGACACACTCAGTTGAAATCCTACTCAAAGCAACTATCAGCTTTCATGGTATCAGAGAAGCAACAGGGCCTGGCGATTGAAGTTGGTCAGGAGTTGGGCTTCAAGGTCAATTTTTCTGTGGTCCTTGGGTTGGCAGAGACGGATAAAGATGCTGAGACAGTTTTCATACAGATTCTCTCCAAACAAGTGTTTTCTGCAAAAGATGCTGCTCCGAAGGTTGTGTGGAGTGGCTGGCTGACCTGCGTCAACGGTGACTTGGATTATCTCCGATCACTACCCCTGGAATTTGTCAGTTTGCCTTTGTTCTGCACCAGAGGACCAGAATCGCTCACAGTGTTGGTCAAAACCTGGTTTGAAAAGACATTTGACTGTTGCTTCGGCCCTCTTGGTATCAACTCTACCAACCTCCAGTGGCTCGCATCCCTATGGACTGGGTGCCACCCCACCATCAACATCCAGTACCTGAAACTGGTCTGGACTCTCCCAACACTACCCCCTATGGACGTTACGTACACCGTCCACCCACAAGATGCCTGGGAGCTTTGGGACAGCATGCGGCAGGTTGACACGACAGAGGACAGCATCAGCATTGATGAGGTCACCGGGTTCATCAAAGGGCTGCAGTCACACTTCTTCAGGCACTTCAGGATAGACTTGTCCGCTGGGTCACTGATGCAGATCTCCACGGCTTTGGGTTCTTCTCACCATAGTGGAAAAATCAAGATTGCAAGCCCTAATTACATCCCCACCATCCTGCAACTGCTGACAGAATGTGCTCTTCTGAAGATGCCAATCTAAGCAGACTGTCTTTGACATCACAAAtcaatgtttgtttgtgttttgtaAAATACCTGTATAACCCCAAAATTACTGTCCATATGAAATTAAACCATTTTACTTTTTTTAATATATTCATGTATTGTATGAAAAGGCAAATGCATACATTTCAAAATAGCTACGCTTTTGCTGATTGTGTATTGCCATTGTTCTGTGGTTTCAGTCACTCTAGATATTATTCACTACAAGCGCAATAGTGTAGAAGTAAATGTGTTACAGCTTAAACTTGCAAATGTTGGTTTTGTCAGTGTGGGGTGATAGTTGATTAATCAGGTTTGATACATGGTAAACCGTCAAGTAACTTGGGCAGTTCTGAAGATATCATTGTTTCAGTCCAGATACAGTAATTGGCAAACTGTAAGAAAGCCTGGTGATTTCCTAAACGGTAGAGATGTAACAACCAAAAAGAATAGTACCTGTAAATACATTTCCATTTTCAAAAACAATTGTTTGATGAGCTTAAAGTTTGAAATAAAGTGTTTTTATTAACA

Function

NR:

description
PREDICTED: centromere protein L-like

GO:

id name namespace
GO:0000775 chromosome, centromeric region cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K11504 CENPL; centromere protein L

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613235.2 False 1691 mRNA 0.43 5 62299897 62302542
XM_036985938.1 False 1730 mRNA 0.43 5 62299897 62311759
XM_021613234.2 True 1713 mRNA 0.43 5 62299897 62312493

Neighbor

gene id symbol gene type direction distance location
LOC110530304 LOC106569068 coding downstream 24663 62185742 ~ 62275234 (-)
LOC110530961 dhx9 coding downstream 114723 62165849 ~ 62185180 (-)
LOC110530303 LOC106569067 coding downstream 154272 62067997 ~ 62145625 (-)
LOC110530302 LOC106569065 coding downstream 235876 62049903 ~ 62064021 (-)
LOC110530300 NA coding downstream 265904 62004172 ~ 62033993 (-)
LOC110530307 LOC106569071 coding upstream 200811 62513304 ~ 62607766 (-)
LOC110530309 LOC106569072 coding upstream 570457 62882950 ~ 62967485 (-)
LOC110530312 tnn coding upstream 896539 63209032 ~ 63239830 (-)
LOC110530314 LOC106569080 coding upstream 979950 63292443 ~ 63294703 (-)
LOC110530317 LOC106569084 coding upstream 1163299 63475792 ~ 63494725 (-)
G731861 NA non-coding downstream 156944 62139885 ~ 62142953 (-)
G731764 NA non-coding downstream 252631 62045035 ~ 62048119 (-)
G731765 NA non-coding downstream 311897 61941991 ~ 61988000 (-)
G731726 NA non-coding downstream 425981 61870180 ~ 61873916 (-)
G731629 LOC106569104 non-coding downstream 428342 61710897 ~ 61871555 (-)
G731994 NA non-coding upstream 49200 62361693 ~ 62362031 (-)
G732041 NA non-coding upstream 85746 62398239 ~ 62398459 (-)
G732140 NA non-coding upstream 158428 62470921 ~ 62471148 (-)
G732337 NA non-coding upstream 302318 62614811 ~ 62615105 (-)
G732910 NA non-coding upstream 552121 62864614 ~ 62865918 (-)
LOC110530228 LOC106569007 other downstream 4436020 57858233 ~ 57864165 (-)
G726900 NA other downstream 4453208 57820047 ~ 57846689 (-)
G726885 NA other downstream 4488475 57805388 ~ 57811422 (-)
G735880 NA other upstream 2677808 64990301 ~ 65040241 (-)
G736216 NA other upstream 3205674 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 3788603 66101096 ~ 66101627 (-)
LOC110530385 LOC106569212 other upstream 3881161 66192359 ~ 66210028 (-)
G737449 LOC106569204 other upstream 4246703 66559196 ~ 66560517 (-)

Expression


Co-expression Network