LOC110530307 (LOC106569071)


Basic Information

Item Value
gene id LOC110530307
gene name LOC106569071
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 62513304 ~ 62607766 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613236.2
AGCAGCACTCCTCAGTCTAGGGCTCAACCGATGTGCTGATCTTGACAGTGAGTGATGACTGTGGCAGGGGCAGCTGAGGCTTAGCTGTGTGGCTCACAGAAAAAGGTGCAAATTGGATGTCTCTGATTTGGTAGCAGGTGCAGGCTCTTTATTGAAGGGAGAGTTGCCTTAAAGGGAAGAGTGATATTTTGTGTGGATTTTATTCTGGTTCTGCTGACTGCTCCACCATATCTTATCATTATGACCTGGAGGCATGGGGGACACTGGCACCTTTGACTTTTTTCTCTTTCTGAAATCCCTTCAAGATATATGCTTCGTTTTGAAtgaagttttgtttgtttttgactaTTATCTAGTGTAGTGTTGTGGACTTTACATGATCATAGGGGCACCTTTGGACCCCAACTTGCAACCAACGTTTACTGACTTGGCTATAGGAGTGAGAGGACAATGCCTGGATTATCCTATAATAAGTGACTCTGTAACTTGCCAGTAGGAAGCTGCAAGTGAAAAAGGGACTGGAGGCTGTCGGTTGGCTGCTGGCTGCATTCCACCAGTTTGGCTGAAGACTGTAAGCGTCCTGACAACCTTCACTAGCTGGTAGGATACACGCACACCGAGAGAAACAGCAGGATCGCACTTCACATTCTGGGTCAGGAGGGATTAGTAGAAGAATGCTGGTCCCGGGTGCCAAACAGGAAGATGGTGATGCGTTGGCCGAGTGCTGCAGCTGTTAAATGGTTGCTGTTGATGCTCCTATGGCAGTGGACAGTGCTGGGCCACCTCGGCTGGGTTCTGGCCCTGGCTGAGGGACAGCAGAGTAAGAACCCCTCACTCACTGCTGCCAGCACTGGACGCCAGAGTGGCGGCCACCTGGATTGGCTACTGTCCGAGAAGGGACCTTTCCACCGTTGTCCTGAATACACAGAGTTCAAAGAACGCTTCCAGCAGGGTTTCTCCACACGCTATAAGATCTACAGGGAATTCAGCCATTGGAAAGTGAACAGCTTGGCTACAGAGAAGAGGGACGTTTTTAAGGCACCCTTGCCGCTGGCGCCAGAGTTTCTACGCAACCTGAGGTTGCTGGGTCGAAGACCAAGTCTGCAGCAGATCCACGAGAACTTGATCAAGAAATATGGAACTCACTTTTTGGTGTCTGCTACGCTAGGAGGAGAAGAATCGTTGACAATCTTCCTGGATAAGCAGAAGCTCAGTAAGAAATCGGTGGGACAAGGAAACAGCTCTGTGGTCTCCCTGGAAGTATTGCATCAGTTGGCTGCCTCTTATTTCACAGACCGCGAGAGCACCTTGAGACGACTTCACCACCTACAGATAGCCACCTCCGCCATAAAGGTAACAGAAACTAGGACCGGGCCCCTCGGATGCAGTAACTATGACAGCCTTGATTCTGTTAGCTCTGTCTTGGTACACAGtcctgaaaataaaatacagctaAAAGGTTTACAGGATGTCCTTCCAGAATTCCTCCGGAACCGTTTCGTGGAGGCTGCTCTCAGCTACGTGGCATGCAACTCTGAGGGGGAGCTTTTGTGTCGTAACAATGACTGCTGGTGCCGCTGCTCTGCCAAGTTCCCAGATTGTAACTGCCCCTTTGCTGATATTAAAGTCATAGAGGAAAATCTGCACAAAAGCAAGGAATCCTGGACCAACTTCAACACCGAATTCATGGAATCAGACGAATTCAAGGCCTTCATGAAAAAACTACCAACAGACCATTTTTTAAACACATCCTCGGTATTCAAGTTTTGGGCAGCAGATGCAGCTCTCCAGAGGCGCTACATCCAATTGGAGAGCAGCACCAATTTCATTCTTGGGAAAGCCCAGAAGATTGTGAGGAAACTCTTCTCTCTGAGCAAGCGATGTCCCAAACTGCCAAGGATCAGCCTCCCAAGAGAAAGGACACCAGGATTTTGGCTGAACAGGGCCCAGTCACTCCTGTACTGCAATGAGCATGGAGTCCTGGGCACGTTTTCAGAGGAGGTGCAGAGCTGCACCTGCACTGCAGAGCACAGTAGTGCCTGCCAGGGGACAGTGCCCTGTGAGGTCGGAGAAGGGTCATCCTGCCTCTCATGTGCCCCAGACAACATCACACGCTGTGGCTCCTGCCACCTTGGCAACATCCTGCACCTGGGCTCATGTCGGCCCAACATAGCAAACTCTCTGGACCACTACCTGAACATTGACTTTGACATGCcggatgcagagttcaagtacCTGCTCCAGCGGCTGGACAGTCGCATGGAAGTCCATGCCATCTACATCAGCAATGACGTGCGTCTAGGCAGCTGGTTCAACCCAGCCTGGAGGAAACGCATGCTCCTCACTCTAAAGAGCAACAAAAACAAATCCAACCTCATTCATATGCTAATGGGTATCTCATTCCAGATCTGCTCTACTAAAAACAGTACCCTGGAGCCTGTGCCTGCCATCTATGTCAACCCATTTGGGGGTAGCCACTCAGAGAGTTGGTTCATGCCTGTCAACCAGCAGGACTTCCCAGACTGGGAAAGAACTAAGGTGGATGCCTCTCTGCAGTGCTACAACTGGACACTGATGCTGGGCACCAAGTGGAAGTCCTTCTTCGAGACGGTGCACATTTACCTGCGCAGCCGCATCCTGACCGATGACCCCACCGTCAACGAGACCCTTTTCTACGAACCCCTGGACCTAGATGACCACACGTCCAACCTGGGCTACATGAAGATCAACAATCTCAAGGTGTTCGGCTACAGCATGCACTTTGACCCCGAGGGCATCAAAGACCTGATTCTGCAGCTGGACTACCCTTACACGCAAGGCACCCAGGACGCAGCCTTTCATATGCTGCTGGAGATGAGAGACCGCATCAACCGGCTCTCCCCGCCTGGATTGCAGGCATTGGACCTCTTTTCATGTCTGCTCCGCCACAGGCTCAAGCTCTCCACTAGTGAGGTGGTGCGCATCCGAGACTCCCTCCAGATTTTCAACTCCAAGCTGCCGAATTCCTCGGAGGCagagctgggccaattgtgcagctAGCTCAGTCTAAATTAGAGTCCAGAGAGTGCTGTGCTGCGCTGCTGGTTACTCTTCAGTCAGTTGCCAATTTATCCATCTGGTTTGGAAAACATGCACATACATTTCTCTGAGATGTCTAGAGCATTCCTATACACTGGTTGACAGAGCTCAGAGTGTGTTGGCTCTGTTGGATGTGGAGTGATGTCATGACAACAGATTTTGCTTTCCACAGATAGAGTTTTTAATATAAAGAGCAAGGAACTGAGTTTGGAAAATAATTGCTCTGGATTGTTCATCTGTTGGCAGTAAGTTGAGGAAACAGAAGAGGATTTCCCTTTCTAACGCTTTTTTCTTTGGTTACAGAATGATTTCATTTAAAAGAGTCTGATGGGCTGAATGAGTTGATTATGCttacaaaatgacacattggtttccttaccctgtaagcagtctatggacaaggtttgacagcaatccatgttttggtttagtttccctggcactgtttccacatgctaatgTTTTGGAATTTGTGGCagaaatcccattcaagtcatgggaccgatattagcatttttcacaTCCAAATCATGTCCACATTTCTTAAAGTATCTAAAGTTGAATGTAAAGCCCAACAAAGTCACTTATGAGTTTAACATGATGCCCAGAAAATTCTAATATCGTTCATGactttgtgccacaaatgctaaaacattagcatgtggaaactgtgccagggaaactaaaccaaaacatggattgctgtcataccttgtccatagactgcttacagtgtaaggaaaccaatgtgtcattttgtaatttgggtgaactatcccttcaaCGGTTTATTATGATAATCATCCCCAAAAATTTTATCCTTGCCTTTCCATTTTATCTGGCATTCAAAATCCTGTAAAATATGTATTTGTGCTTAAAATTTGGTTGGGAAGCCCAATAGTAAatatttctatttatttattcagCAACATTACTTTACCAAAAGAAGCTGAACATAGTGGCAAAATGAATggttaaaatgttttaaatgttgaAATATCCTTTTGAGAGGATTTCAAAAGGTCTGTGGATACAGCTGTGTACATATTGCTCCATCTAAATCTAGATGTGGAAAGTACACATTGCTTTTTAGATAACGAAGTGCAAAGACCAAAAAAATATTTGTAACAAAATAAAATCATGCCTTATGATGGAGAATCAATGTTCAGATAAAAAGCACATTCAGCTGAATGTTTCATTTTCAGGCTAGACCTTTTGaatatacaattgaagtcagaagtttacatacacttaggttggagcaattaaaactcattttttaaccactccacaaatttattgttaacaaac

Function

NR:

description
BMP/retinoic acid-inducible neural-specific protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613236.2 True 4389 mRNA 0.46 8 62513304 62607766

Neighbor

gene id symbol gene type direction distance location
LOC110530306 LOC106569070 coding downstream 200811 62299897 ~ 62312493 (-)
LOC110530304 LOC106569068 coding downstream 238070 62185742 ~ 62275234 (-)
LOC110530961 dhx9 coding downstream 328130 62165849 ~ 62185180 (-)
LOC110530303 LOC106569067 coding downstream 367679 62067997 ~ 62145625 (-)
LOC110530302 LOC106569065 coding downstream 449283 62049903 ~ 62064021 (-)
LOC110530309 LOC106569072 coding upstream 275184 62882950 ~ 62967485 (-)
LOC110530312 tnn coding upstream 601266 63209032 ~ 63239830 (-)
LOC110530314 LOC106569080 coding upstream 684677 63292443 ~ 63294703 (-)
LOC110530317 LOC106569084 coding upstream 868026 63475792 ~ 63494725 (-)
kiss1ra LOC106569085 coding upstream 939813 63547579 ~ 63561814 (-)
G732140 NA non-coding downstream 42156 62470921 ~ 62471148 (-)
G732041 NA non-coding downstream 114845 62398239 ~ 62398459 (-)
G731994 NA non-coding downstream 151273 62361693 ~ 62362031 (-)
G731861 NA non-coding downstream 370351 62139885 ~ 62142953 (-)
G731764 NA non-coding downstream 466038 62045035 ~ 62048119 (-)
G732337 NA non-coding upstream 7045 62614811 ~ 62615105 (-)
G732910 NA non-coding upstream 256848 62864614 ~ 62865918 (-)
G733000 NA non-coding upstream 391466 62999232 ~ 63079193 (-)
G733215 NA non-coding upstream 584522 63192288 ~ 63192491 (-)
G733226 LOC106569076 non-coding upstream 594484 63202250 ~ 63208657 (-)
LOC110530228 LOC106569007 other downstream 4649427 57858233 ~ 57864165 (-)
G726900 NA other downstream 4666615 57820047 ~ 57846689 (-)
G726885 NA other downstream 4701882 57805388 ~ 57811422 (-)
G735880 NA other upstream 2382535 64990301 ~ 65040241 (-)
G736216 NA other upstream 2910401 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 3493330 66101096 ~ 66101627 (-)
LOC110530385 LOC106569212 other upstream 3585888 66192359 ~ 66210028 (-)
G737449 LOC106569204 other upstream 3951430 66559196 ~ 66560517 (-)

Expression


Co-expression Network