LOC110530309 (LOC106569072)


Basic Information

Item Value
gene id LOC110530309
gene name LOC106569072
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 62882950 ~ 62967485 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985949.1
GAATCACTGTTCAATGGCTGTGGTGGGGCACTAGACTGACTATTCATAAAAGTGCCTGAAAAATACAATTAAGGAGTATGGACAGTGCACACAACTCGACGTCGATGGTGAAGAGTGACTGCCTTGGATAGAGAGGTTTCCTTTCTTTACTAATGTGTGTAGTAGGGGCAGGGTTAGTGATGTCAGTCTGAGAGTAATAGATAAAACGTTTCAGCGCGTTGGTTTGATCTTCTGAATAGGCTATGGAGGAGAGCGAGACTGGCGGTTCATCAGCGCAGAAAATATATCCACAATTTCAAATGGGCATACAAGAGGACTTTACGCGCGCTTGAAGGTGATTTAATGAACAATTGTTTTATTTGGAGTCTCTCTTAACAGGACCAGCAGAGCATTTAGTCTGATTCCCATTGATTTGCTCTTGCTTCTTGTCTCATACCTTgctgttacttttttttttttttaccaaatacaGGGAAAGGAAATAGCAAATAAATAACAATAGACAATAGTTGATGGTTAGGTTACTTATATTTCTGCCATTGTGTAGCCTATGACTGCATTTAAGGTTTATCTTTAAATAAAGCTTACCTTTACTTTATGTGACTTCATAGTATAGTCATTGAATGAGAAATATTGGCTTAAAAACTAAAAACCTCAGCCAGCTTGTTCATTGTTTTGGTCACCCCAGCATCCTTCTCACAGGGTGAATTTTAAGTTAACAACAACGGGCACTATCGAAAATAGCGCACGAGGAGATTGGTGGCAAGACCTGAAGGCAAGACATGAACTAACCTTTATTTTGCGCGGAATGGATGAAAACACTGAAATCATCACGTGAATGATCCtatatttaaaataataaaaagATAAATCCAACCAGGGACAATAGTCTTCCAACTGAATTCTATGGACAAGCAGATCGACTGAAAGTAACCATATTGCACAATTTCATTCCAAATTCAAAATTGATGCTGCAAAATACAGTAGCCTAATGACAATACTTTCATCCTATTCAAACAGGCGGTATTGTGGTAGGTTGCTCTGACCGTCACTTTCCCTTAAAAAGTGTCCAGTTCACAGTGCAGCAGGTTTTAAAGTCGAGTTGATGCGATGCGTGCAGTGGAGGCTAGACGAGAGGCAAGTTGTAGTTTTGTTTAGACCGGCGAAATAGCCAGAAGCTTTTACAAACTAAATATACATTGAACCTCCATATGCAACAGCCTGAAGATTTTGCACTCAGTCAATGAAACATACTGCTACAGTTCTCTATTTGAGTGCACTGACAGGCTTCTATTTAGCTACTTTTTGAAGTCTGGAAGGAAAACTGCCATCTTGATGAAAGTATGCATGACACACCTGCCTTGACTGCATTGCACTAAATAGACCAGTCCAAACAAAAATAGGCAATTGCTTTTGCAAAAAATAGGATACCtgttaaaaaaattatatatatattataatactaTTAGTTGAGAAATACACAGTTACCCACTTATCACTAGTTTATGTAATGGGGAATAGGGGGTTTAATCACATCTGATCTTGCCGCTGTATTCAACTTTATATCGAAGAAGGCAGGGTTCCAGAACTGAAAACATTCCAAAACAACAATTCCAAATCTAAACTCCAAAATGTTGTTTGTTAGACTACTGGCTGTTGTCCTCATAATGATCAACACATGGCTGCTAAACTCTGCTCAATCAGATCATATCCGAAGATACAAACGCGCAATGGCTCAGAGAGCTGACAGTGAGCTGGCTCACTTAGCAAGTGAACAGTGCAGGTCCACCAGACAACTGAGACAAGCAGCATACTCAGCATCAGTTCCACATCTCCCTCCAGTGGCTCACCCAAGGAGATACATCACAAGGCAAAGTGGTCACTATCATATAACTCATCTTGAGGAGACCTCCTGTTCAGGTGGGTGCAATTCTGATGCTAATTCTAACCGGAGACTGGATAGTGCCTCTCATTGGGGCAAAGGTGAGAAGAAGGTTAGTCGGGGAAACTCAGAGGCAGTGATACCCAAAGACAAGGAGGATAGACATGTTAAGATTCTAGGGATGATCAGTTCTCCTAACCCCAACTTCAACAGAAAGCCTCCCAGTCAGGCTGATGTGACAGTGGACTCAAGTAGTGGCAATGACAAACCAGAGGTTGATGGTGGGCGCTCTGAGGGCCCACACAAGCAGCTGCTGCTCAAAAAGCAGCAGAGAGTTCTGACTGGAAGGGTCCGCCGTACCCTTACAGTCTCAGATGGTGAAGACAGTTGGGCAGCTTTCCCTGAGAGCGTAGTAAAGTCCCGCAGGATATTTTCTACATTCCGGCAGCACAGTGACTATTCTGCTGAGATTGAGGACTACCCTGTGGAGCAGGAGGGACCACCTAGCCGCGCCAGCATGTTGTGGGGTGCCCAGATTCCAGACGTCCCCCCTAAGTGGATGTCTGCTTTGTACTTTAGTGGACAGAAGGAACAACTGAGGGTCAATCCAGCAGCTGGCATTGAGCTTCCTCGGGCTAAGTTCAGTGTTGAACTGTGGGTCAACCCAGAGGGTGGGCAGACTAACCCAGCCATCATAGCAGGGGTTTTTGACAACTGCTCCCACTCCTTAAGTGAGAAAGGATGGTCCGTAGGTATTCGCACAGTAAAGCCCGGTGGAAGAAAAGATGCCAGATTCTTTTTTACACTCCGTACAGACCGAGCTCCCAAAGCTACGACTATCTATGGGCATCAGCGCTACCACCCTAACTCCTGGACTCACCTGATGGCCAGCTACAATGGCCACAGGATGAAGCTCTACATAGATGGTGCCAAGGTTGGGGAGAGCAGTTTGCAGTCTGGTAACCTCTACAGCCCGTTCATGGAGACTTGTCGAATACTTCTTCTAGGTGGGGACCAGTCAGACCTTGGGCACAACTTCCGAGGGCACATCGGAGGCATTGTGTTATGGGTGCTCCCCCGCACTCACGAGGACCTCCTTAAAGGGCCTTCTCGGATTGATAAGAGGGAACCAAACCTCGCTCTCTGGGCGGACTTCTCCGAGATAGAGCAACAGTGGAGTCCTCATAAGGAGGGCTACCACCCATCCATAGTCATCATCCCTATCCCTGAGCAGGAGCATGTGTCCCCCTTTCTGCCCCCTCCCTGTGGATTAACAACCTGTGACAACACAGACATCATCCTAGGCTACAATAACCACTGGCAGCTGCGCACAGAGAAAAGGATCCGCTACCGTATTGTCAACATCTGTAACGATGACGGAAGTCGTCCCACTGTCTCTCAGGCCCAGATCCAGATGCAGCACCAGGCACTTGTCGAAGCCTTCCAGTCCTACAACATCAGCTTGGAGCTGAGCACGCATAATGTCCAGAATACATCTGTACGCCAGCGCTTCATCCTCAGCAACTGCCGGATCAGTAAGATTGGTAACAGACACTGTGACGCGGAGTGTGACCACCCACTGACGGGCCacgatggtggggactgtctgCGTCTGGGGCCCTGCTACAACTGGAAGAGGAGGGACGGGGTCTGCAACACAGAGTGCAACAGCATCCACTACGACTATGATGATGGAGACTGTTGTGATCCTGAGGTCACGGATGTCCTGAAGACATGCTTCGATCCAGAGTCCCCAGATAGAGCCTATATGAGTGTGAAGGAACTGAAAGAGTTGTTACACCTGAGCAGCACAGACACCCTAAATGTTTTCTTTGCCAACAACTCAGCCCGTGAAGAGTTAGCAGGGGCTGCAACCTGGCCATGGGCAAAGGAGGCCCTCAACCATCAGGGTGGAATGGTGATGAATCCATCCTACTTCGGCACCATCGGACACAATAACACAATGATCCATGAGATGGGCCATATCTTCGGACTGTACCATGTCTTCAAGGGGGTCAGTGAGCGGGAGTCCTGTGATGACCCCTGTCAGGAGACCACTCCCTCCATGGAGACAGGAGACCTATGTGCAGACACGGCCCCTACACCCAAGTCTAAGGCCTGCCATGACCCTGGTCATGTCAATGACACCTGTGGGATAACGCTCTACCAGGACACACCGTACAACAACTACATGAGTTACACAGACGATAACTGCACCAACCATTTCACACCAAATCAAGTGGCTCGGATGCATTGTTATATGGATCTAGTCTACGAGAACTGGCTGAACAACAGAAggccctcccccatccctctcaaGCCCATGGTGATTCGACAGAGCTCAGACTCGGTCTCCATTCATTGGCTGCCACCTGTAAGGGGGCCACTTCATCAAAGTTCCCCTACAGTGGATAGTGTAAACTGCAGGGACTGTGAGGCAGATGGTGTGTTCCATCAGTATGCCTATGAGGCCACCTCGCCCCGGGTCTGTGACTCCTCCGGATACTGGACACCTGAAGAGGCTATTGgcccTCCAGATGTATACCAGCCATGTGAGCCCAGCCTACAGGCCTGGAGTCCAGAGCTCAGCCTGTATGATGCCAATGTGACGTCTCCCTGCCCTGAAACAGAGGGCTGCGTCCTGATGCTGCGCTTCCTCCACCCTGTGGTCCCTGACAGCCTCACTGTGTGGGTCACATACGTCTCAGCCGATAACCAGGCAATCGCCAACATCGAGCTAATAACAGACACAGACGAGTCTCTTGACATGGGTCCACAGCACGTCTTCTGTGATGTTCCCCTCACTCTACGTCTGCACACCGGAAAAAGGGTGGCAGCTGTCAAACTGAGCACCTTTGATGAGAAGATGGAGATTGATGCTATCCTGTTCACTTCTGGCCCCCACAATCCTCTCTGCTCCAGTTGCCAGCCTCTGATCTACCGAGTTGTCAGGCAACCAGCGTTTTCAGGCGATCTGGTCCAACAAACTCTGCTTACATTTACAGACAGCGACATTGTAAAGGACAAggaataccagtacagagttCAGGTGGAAGCAGACGGTCTCCTCAGTGagctctccccacctctcctctacaCCCATGGAGCTGCCTACTGCGGAGATGGACTACTCCAGGGgacagAAGACTGTGATGATGGCAATCTGTTGGATGGTGATGGCTGCTCTAAGAAGTGCCACATGGAGTCAGGCTTCAATTGCAATGATGAACCCAGCCTGTGCTACGTGTTTgagggtgatggtgtgtgtgaggtgtttGAGAGGGGTTCCAGCGTACAGGACTGTGGTTACTTCACACCTCATGGGTACAGTGACCAGTGGGCTTCAACCGCAGCAGCTTCCTATCAGGATCAAAGCAGCTGCCCTGCCCTGGCAGCCACCGGAGAGCCCTCACTTAGCAAGCTATGCAAGCCCCAGTACCTGGAGATGAATGAGAAGCCGTCACTTGACATATGGTTTCCATGCACGGCCCAGTCATACACTCAGACCCACTATGGCGAGGAAGACACAGTATGGCTGAAGGTGGGATTTGCGCAACCTGGAGTCGCCACGTCTGTCATCATCTATCTGGCCTCAGACGGAGCCTGGCCTGGAGAGCAGTGCAGGAAATCAGTCTTCATCCAACTGTGTGATACTGGTGGCAGAAACCACTCCTTGGGTTCCTTTGAGCTGTCGTGCCAGCAGAATCCCTTGGTGGTGAACGTGACACACAACCTGAGTCAACCCTTCTTCCTGACTACCGCTGTCATCCTCAACTTCTCCTCACCCTTCGTTGCCGTGACAGGAGTCGCTCTGCGCACATCATGTCACTTCAGCGCCTTTGCCCTCACTAGCTGTTCACGACGGCCCTGCCAGACGGACACATGCAGTCCTCCTCAGCTGGAGCATGCCTCTCTCACCTGCAGCACCGGGATAGAGACGACTGAGTCCTCTCACTGCACTGTCCACTGTCATCAAGGTTTTACCCTCACTGTGCTCAGTGGCAAGGGCCATCCACCCTTTCAGCGAGAAACGGAGCTTCAGTGTGTACATGGAGCATGGGACCGTGTTGTGAGCTGTCAGCCAATCGACTGTGGCCCCCCTGACCAGTCTCACGTCTACTTTGCTGCCTTCAGCTGCCCCTGGGGCACAACATTTGGCAAGCAGTGCTCTTTCACCTGCAACCCCCCCGCCATACTCCAGGGAGACAGTGATAGGTTGGTGTGTTTAGATGATGGTCTATGGTCCTTCCCTGAAGCCTACTGTAAGATAGAGTGCCCAGAGCCTCCAACAGTACCCAATGCCAAGCTCCTAGTGCCCCAGTGTGAAGGTACAGGGCATGATGTGGGTACCGTATGCCGTTACAAATGTAACCCAGGTTGCTATGTTACTGGCAGCCTAAAAACAAAGTCCAGAAAAAGGTTTCTGAAGGTGGAGTGTGTAGAGGGGGGCCAGTGGGAGGAGGGGGGCTGTGAACCCATTCCCTGTCCATCTCTACCTGCTGTCTATGAGGGCATGTTCACCTGCACCAATGGCAGGCACTACAACAGCCTCTGTACCCTCCAGTGTCCTCATGCCTCGGAAAACCACACAATTCGCTGCACTAAAGATGGAGAGTGGACAGAGAAGTTCACAATGTGTACAAGGTTGAATGAAGCCTGCCCACCTCCCCCTGATGTCAATCGGATTCAGTATGCCTGTGACGAGGGCTTCAGTGTTGGTGCAGTTTGCTACCCAACATGCAGTGCGGCCTTGCATGACCCAGTGGTTCTAGCCAATAGCACCACAGCAGACAGCGTCAAGCACTGGATGCTGCCAGGCAGGGTTCAGGGCATTGTTTGCACAGGAATGACGAGGTGGCATCCTGACCCCAAACTGATCCACTGTATCCAGTCATGTGAGCCCTTTGGGGGAGATGGTTGGTGTGACACCATCAACAACAGGGCCTACTGTGAGTATGATGGAGGGGACTGCTGTCCATCCACCCTCTCAACCAGAAAGGTCATTCAGTTTGGGGCCGACTGTGATCAGGATGAATGCACTTGCCGTGATCCAAATGCAGAGGAGAACAAGAGCAAAGCCAAATACTTGGAAGCAGGACTGCTATGAACGATGGAACGGGATAGGCCAAGGCTGGCTCACAATGAAACAACAAGATGAACTTCACCCCTGGTCATGATGTATTTCCAGTTTGTTTTCCTATTAGAGAGCAATGAAGGCTATCTCTTTTAaccaaaaataaaaacagtgtttcaAGATTGTAGCTTTTAGGATTTCAACACAATAAATAATCTGTAAAGACGACTAACTTGTATAGAATAATATATTTGGGAAATGTCTAATGTCGCATGTAGATGTAGTTACGGAAGTCTACAGTATTTCAACATCATATCACATAATACACATGTAAGCATATCATAGGTACTAACTTAACACTTTATGTTTAGAGAGTTGTAAGATGTAGCAGTTTTCTCAAGAAATATTCTACCTAAGTGTCGTCTTGTTCTGTGTGATACTATACTGTATTTTACTCTTGATATTGAATAAACTGTAACTTTGTCAGATGCTGATTTTATctaatttgtttgtttttgggtCTCCACACTCCTCTGAACATAAGGGAAACACATACAGTACTATCTGTATCTCTTGCCCGTAagaatatacactgaacaacatgcaacaatttcaaatcaaatcaaactttatttgtcacatgagccaaaTACAGTAGgtttagaccttaccgtgaaatgcttacttacaagcccttaaccaacaatgtagttcaagaaagagttaagaaaacgTACCAAATAAACAAAGCTATAaggaaaaaatatttaaatatattaattaggccctaatctatggatttcacatgactggaaatacagatatgcatctgttggtcacatataacttttt

Function

NR:

description
pappalysin-2-like

GO: NA

KEGG:

id description
K08647 PAPPA2; pappalysin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985949.1 True 7808 mRNA 0.48 23 62882950 62967485

Neighbor

gene id symbol gene type direction distance location
LOC110530307 LOC106569071 coding downstream 275184 62513304 ~ 62607766 (-)
LOC110530306 LOC106569070 coding downstream 570457 62299897 ~ 62312493 (-)
LOC110530304 LOC106569068 coding downstream 607716 62185742 ~ 62275234 (-)
LOC110530961 dhx9 coding downstream 697776 62165849 ~ 62185180 (-)
LOC110530303 LOC106569067 coding downstream 737325 62067997 ~ 62145625 (-)
LOC110530312 tnn coding upstream 241547 63209032 ~ 63239830 (-)
LOC110530314 LOC106569080 coding upstream 324958 63292443 ~ 63294703 (-)
LOC110530317 LOC106569084 coding upstream 508307 63475792 ~ 63494725 (-)
kiss1ra LOC106569085 coding upstream 580094 63547579 ~ 63561814 (-)
LOC110530962 LOC106569119 coding upstream 804198 63771683 ~ 63777609 (-)
G732910 NA non-coding downstream 17032 62864614 ~ 62865918 (-)
G732337 NA non-coding downstream 267845 62614811 ~ 62615105 (-)
G732140 NA non-coding downstream 411802 62470921 ~ 62471148 (-)
G732041 NA non-coding downstream 484491 62398239 ~ 62398459 (-)
G731994 NA non-coding downstream 520919 62361693 ~ 62362031 (-)
G733000 NA non-coding upstream 31747 62999232 ~ 63079193 (-)
G733215 NA non-coding upstream 224803 63192288 ~ 63192491 (-)
G733226 LOC106569076 non-coding upstream 234765 63202250 ~ 63208657 (-)
G733260 NA non-coding upstream 296269 63263754 ~ 63263967 (-)
G733261 NA non-coding upstream 296559 63264044 ~ 63264455 (-)
G731764 NA other downstream 834831 62045035 ~ 62048119 (-)
LOC110530228 LOC106569007 other downstream 5019073 57858233 ~ 57864165 (-)
G726900 NA other downstream 5036261 57820047 ~ 57846689 (-)
G726885 NA other downstream 5071528 57805388 ~ 57811422 (-)
G735880 NA other upstream 2022816 64990301 ~ 65040241 (-)
G736216 NA other upstream 2550682 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 3133611 66101096 ~ 66101627 (-)
LOC110530385 LOC106569212 other upstream 3226169 66192359 ~ 66210028 (-)
G737449 LOC106569204 other upstream 3591711 66559196 ~ 66560517 (-)

Expression


Co-expression Network