LOC110530312 (tnn)


Basic Information

Item Value
gene id LOC110530312
gene name tnn
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 63209032 ~ 63239830 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985951.1
CATTTCGGAAGGGGATTTAACTACTTGAGGGAAAGGCTGTTGCTGCAGGAGCCACAGAGGCATTGGTTATAAGGGCCCCTTCAAACTCATGCCCTGAGCTTGTCAacaggtgtcagagagagaagaaatagaGTGACAGATTCTCAGGCTTTCAGAAGAGGGAGTCACAGGGAACTGCAACGCCATGACCACTAGACTTCACTGGCTCACAAGAGCCCTATGCCTGATAAGCATACTGTGCACTGTCACTTCCAAGTATGTGACAGAAGATTATTCATCCCCTGCTGAGAAAGAAGTCACCTTCAGCCACGTCTATAAGATTGACCTGGCCAAGAGCCCTGAGTGTAAACTCGCCTTGCAGACCCTCCCTTCCCAACAGGACCAGTTTTCAGGCCTGCAAGAGCTGGAAGGGGGCGCTACTCTGGAGGGGGAAAACAACATCGTTTTCAGGCACCAAATCAACCTCAAGACCCCAAAGTGTGACTGTGATGAGTCGGAGAGCTTTACGTCTCTGCTGTACAGAGTCAACgggctggaggaggaggtggaacatCTGAAGAGTCAGTGCTCCCAGGGCTGCTGTGGTGGAAAAGGTGGTGGAGCAGGAGGTGTGGACACTAGCTGTAGTGGCCACGGGACCTACCAGCACAACACCTGCAGTTGTCAATGCAACCCTAGCTGGGAGGGTCCTGACTGCTCCATTTCCACCTGTCCTGATGAGTGCAACGACAACGGCCGCTGTGTGGATGGCAAGTGTGTCTGCCACGCTGGCTATACGGGGAGTGACTGCAGCCAGCTGATGTGCCCAGGCGACTGCAACGATAAGGGACACTGCGTGGACGGCAAGTGTGTTTGCTTCAGCCACTTCACTGGCGAGGACTGCAGCGAACAGAAATGCGATCCTGACTGCATCCACGGCACCTGCGTGAACGGAATGTGTATCTGTGACGAAGGCTTCTTTGGGGAAGACTGCTCTACAGTGTCGGGCCCTAACGGCCTGCGTCTGGTAAGGGTGACTGATAATTCTCTGTTGGTGGAATGGGAGGCTGTGAAAGCAGCAGAGTACTACATCCTGACCTGGCACCCTGAGGGCAATGAGGCAGAGCTGGAGCAGTTCACCGTGCCCAACACAGAGACCTCCTACCTGATCACAGGACTCAGCCCAGGTGTCACCTACATAGTGCAGGTGTACGCTGTCATCAAGGAGATCCAGAGCGAGGGGGACAGGATCGAGGCGACCACAGAGGTGTCTGGTATTGATGGTATCCGGGTATTGGGCCAGACTGAGGACTCTATCCAGGTGGACTGGCAGAACCCTGCAGCACCTCTGGACCATTTCAGACTGACCTATGCTAACCCTGAcgggcaggaggaggagcagaacGTACCAATGAGTGCAGAGGCCAGGACCACCCACACCATCGTAGgaCTGCAACCTGGCACTGAGTACCTCATCACAGTGCAAGGCATCAAAGGGACCATCGAAGGGAAAGCCTCCTTCGCCACCGGGGTCACAGATCTTGACGATCCTACTAACCTCTTGACCAAAGAAGTGACAGAGGATACCGCTACCGTGGAATGGCAGAAGGTACAAGCAGAGATCGACGGCTACGTGATCAGCTACAGCTCTGCGGAGGGCTCCAGTGGGGAGATATCTGTTGGGCCAGACAGCACCTCATACAGGCTGACTGGGCTGAGGCCTGGAGTTATCTACACAGTCTACATTGGGGCTGTCAAGGGCTCCCGGGTCAGCAGGAAGAGCTCCACAGAAGCTGAGACAGAACTAGATGTTCCTACTAACCTGTTGACCAGAGAAGTGACAGAAGACACAGCGACAGTAACATGGGATAAAGTCCAGGCTGAAATCGACGGCTACCTGATCAGCTACAGCTCTGCTGAGGGCTCCAGTGGGGAGATCCCTGTTGGGGCAGACAGCACCTCATACAGGCTGACTGGGCTGAGGCCTGGAGTTATCTACACAGTCTACATCTGGGCTGTCAAGGGCTCCCGGGTCAGCAGGAAGAGCTCCACAGGAGCTGAGACAGAACTAGATGTTCCTACTAACCTGTTGACCAGAGAAGTGACAGAAGACACAGCGACAGTAACATGGGATAAAGTCCAGGCTGAAATCGACGGCTACCTGATCAGCTACAGCTCTGCTGAGGGCTCCAGTGGGGAGATCCCTGTTGGGGCAGACAGCACCTCATACAGGCTGACTGGGCTGAGGCCTGGAGTCATCTACACAGTCTACATCTGGGCTGTCAAGGGCTCCCGGGTCAGCAGGAAGAACTTTGTTGACGCTGAGACAGATTTGGAAGCTCCTACTAACCTGTTGTCCAGAGAAGTGACAGAGGACACAGCTGATGTGTCGTGGGACAGACCTTTAGCGGACATTGATGGCTACCTGATCAGCTACAGCTCTGCTGAGGGCTCCAGTGTGGAGATCCCTGTTGGGGCAGACAGCACCTCCTACAGGCTGACTGGGCTGAGGCCTGGAGTCATCTACACAGTCTACATCTGGGCTGTCAAGGGCTCCCGGGTCAGCAGGAAGAGCTCCACAGAAGCTGAGACAGAAATTGACGCACCAAAAAACCTGAAAGCATCGGATGTTAAACTGAATGTAGCTACCCTGACCTGGACTGCTCCCTTAGCCAGAATCGATGGCTACATCCTCACATTGAGAGCTGAGGATGGCAGTTTGAAGGCTGTGGAGAAGAAGCTGAGGGCAGGAGAGAGCAGCTTTGCCTTATCGGGCCTGGAGAAAGGAAAGAActacattgttaccctccttgctTACAGAGGACCAAAGAGGAGCAGAGTGATAGAGATCACATTCAAAACAGTGGGTTTGTTGTACCCATTCCCCATGGACTGTACTCAGATTAAGAAGAATGGTAACGTGGCAAGTGGAATCTACACCATTTACGTCAACAGTGATCGCACCAAGCCCATGGAGGTGTACTGTGACATGGACACTGATGGCGGTGGATGGGTGGTGTTCCAGAGACGCAACAATGGACAGATGGACTTCATGAAGCGCTGGAGACAGTACATGGCTGGTTTTGGGAACATGACTGATGAATTTTGGCTTGGTCTGGACAATATCTATGAGCTGACCAATACTCCCACGCAGTACGAGCTGCGAGTGGACCTTGGTGTGGGTTCAGAGAAGGCCTATGCTGTCTATGACAACTTCAAGATAGCCCCGGCTAAGCAGAAGTTCAATCTGACCATCGGTGAATACAGTGGAACAGCAGGCGATGCCATGAGCTACCATCAAGGTCGCCCCTTCTCCACGGTTGACAATGACAATGACATTGCTCTTGGTAACTGTGCCCTGACACATCGTGGTGCATGGTGGTACAAAAACTGTCACCTTGCCAACCTCAACGGCAAATTCGGAGACAACAGACACAGCATGGGTGTGAACTGGGAGCCATGGAAGGGTCACCTGATGTCTCTTGATTTCACTGAGATGAAGATTCGGCCTGTGGGCACTGCCAGGAAGAGGAGGTCGCTTAGAAGCAGTACAGCTCCCAGAAAATAGTCCCTCTGATGAACTAAAGCAGTCAATGGGAACCTCATTACAAACCAGGCAAAGTAGCTAGAACCTCAAACCAGGAACATCAATCTATCTCAAGACTATTGTAACTTACTTTATGTTAACATATCATATGGCTGCAGCCATAAACGTCTTTATTTTTCATAGGATATTTGTATTATTGGTTTATTTCATATATATTATGAACAAGTGAACTGCAACTTTCACTGTATAGTGTTATCACATGGGCAAAGTAAAAGGATTTCGTATCTTGGCTCTGTCCTAAAGCGGCATTCCTCGCAGACGTAGATTCTTAGCAAATGACCTCTGTCCTATTGTACTGTATATGATTACATTTTATAGGCTGGCTCCATGGCATAAAACAGTCACCATATTCATAACACTGTCTGCTCCTATTATGCATAATCAGTTAGATCACCAAATGATACCGTGTTTTTAGAATAGTTATACTGCTCTTGTTCACATTCATAACATAGCATAGACCCTGACTCTCTGTTCTAAGTTCTGGTCTCTGGCCTACCCAGCCTACAGAGTTAGCTACATTTCACATTTCAGATGTTATGCATAAGAAATAGAATGTATGACATGCTCCTTTGTAAGATTGTATTTTCAAGTGTGTATTGTAATTGTGTCGTTCCACGAAGAGTGccttttgcgtccctttgatattttaagtagaaattaaAAACCTgctatattaaatgaagtgccctttaatatagaccacatggagaattcaatcaaTCGGATTCCTAAAATGAATATAGGCTTGCTAAAAtgccaaaattcagcattttgacatgtccctccatccaccttgtgtcacttctaggaagattttaacccacttaatcccAAAAGGTCTCCaagtttcaccatcattgtaaagccctactTAAAGTGTTGCTAtgacagtcatttctgaagacTATTAtgtatttcatgtgattagtgattcatttacatcTGTCCCTCGTTTTAAGGTCAACactgttatgtgaactgaacaCGGTTTTTGCAGAAGAAACATTGAatatctaatagtcaaatcatagagtAAAATATTTTattggccattttctggtgttttgtggtgtcAAGCATAACATGTCAACCTTTTTACCCATAGATTGACAGGCTATAAATGTTTCAACAAGTTCA

Function

symbol description
tnn Predicted to enable integrin binding activity. Predicted to be involved in cell-matrix adhesion and neuron projection extension. Predicted to be located in extracellular region. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in corneal epithelium and head. Orthologous to human TNN (tenascin N).

NR:

description
tenascin-N

GO: NA

KEGG:

id description
K06252 TN; tenascin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985951.1 True 4723 mRNA 0.49 17 63209032 63239830

Neighbor

gene id symbol gene type direction distance location
LOC110530309 LOC106569072 coding downstream 241547 62882950 ~ 62967485 (-)
LOC110530307 LOC106569071 coding downstream 601266 62513304 ~ 62607766 (-)
LOC110530306 LOC106569070 coding downstream 896539 62299897 ~ 62312493 (-)
LOC110530304 LOC106569068 coding downstream 933798 62185742 ~ 62275234 (-)
LOC110530961 dhx9 coding downstream 1023858 62165849 ~ 62185180 (-)
LOC110530314 LOC106569080 coding upstream 52613 63292443 ~ 63294703 (-)
LOC110530317 LOC106569084 coding upstream 235962 63475792 ~ 63494725 (-)
kiss1ra LOC106569085 coding upstream 307749 63547579 ~ 63561814 (-)
LOC110530962 LOC106569119 coding upstream 531853 63771683 ~ 63777609 (-)
slc6a9 LOC106569088 coding upstream 563011 63802841 ~ 63885395 (-)
G733226 LOC106569076 non-coding downstream 375 63202250 ~ 63208657 (-)
G733215 NA non-coding downstream 16541 63192288 ~ 63192491 (-)
G733000 NA non-coding downstream 129839 62999232 ~ 63079193 (-)
G732910 NA non-coding downstream 343114 62864614 ~ 62865918 (-)
G732337 NA non-coding downstream 593927 62614811 ~ 62615105 (-)
G733260 NA non-coding upstream 23924 63263754 ~ 63263967 (-)
G733261 NA non-coding upstream 24214 63264044 ~ 63264455 (-)
G733262 NA non-coding upstream 25241 63265071 ~ 63265277 (-)
G733263 NA non-coding upstream 25461 63265291 ~ 63265581 (-)
G733264 NA non-coding upstream 26811 63266641 ~ 63266941 (-)
G731764 NA other downstream 1160913 62045035 ~ 62048119 (-)
LOC110530228 LOC106569007 other downstream 5345155 57858233 ~ 57864165 (-)
G726900 NA other downstream 5362343 57820047 ~ 57846689 (-)
G726885 NA other downstream 5397610 57805388 ~ 57811422 (-)
G735880 NA other upstream 1750471 64990301 ~ 65040241 (-)
G736216 NA other upstream 2278337 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 2861266 66101096 ~ 66101627 (-)
LOC110530385 LOC106569212 other upstream 2953824 66192359 ~ 66210028 (-)
G737449 LOC106569204 other upstream 3319366 66559196 ~ 66560517 (-)

Expression


Co-expression Network