LOC110530317 (LOC106569084)


Basic Information

Item Value
gene id LOC110530317
gene name LOC106569084
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 63475792 ~ 63494725 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613250.2
ATATACCTGTATTCAAAACAGGAAATGCAAACAATATTTCACTATGTCCAAACTATATTCGTTCAAATGTATCGTTATTGGTTATACTCACTGAGCTTAATAAAAAAATGCAATAATACCACATGGCTATGTGGCTACCGAGCTACTTTTTCTGATAGACAATCTTTGAGAACGCCCTTGCTTCAATCAGCATCGCCCTTTTCTACTTCATCCGACGAGAAACTGATTTTAAACATTTGGCGGCGGATTGGGATTTGTTTGGTGCTTGACtgtagccagctaacgttaggttGTATGTAAATAACTTTTAAAAACTTGGCAAGTGAGTTTACGCATTAACATGGATTCAACTATGGCGAAACTTCTTGTTGGACTTTCAGTCAACATCCAAAGAAGCGATGGGCGAGTGCATGCTGCAAATGTCAAATCTGTGGATTCCACAAAGTGTACTGTGACGGTTGAATGGTTAGAGAAATCTGTATGCAGGGGAAAAGAGCTTGAAATTAATGAATTATGGTCCCTGAACAAAGAGCTTTTTGAGCGCATGAAACCAACTAGTATACCTGCTCCTCCGGAGAAGAAATGTGAAAGCCGTCTTCGTTCATCCGGGGTCCCTGCTCCTTCCAGTCCTTCTACTCCAGCGGGTCCTCCTGAGGAGACAGTTCCACTTCCAAGAAAGTCTACACGGCAGACATGCTTGTTCCGGACCCTTACTCCTGTCTCTGAGCTTGCTGCTAAGACTAAGCATGACTCCCTGTCTTCAGAGTATCCACCCTCTGTCCTCAAAGCTTCAGGTGTGCCCAACCGAGAGAGGAAAAGGAACAGTCAGAGACCGACTGCTGTCCTGCCCCCAGTCAACGAGGCCCTGAAGGAGAATGAGGCCAAGAGTGTTTCCTCAGTCACCTCAAGCAGACGGAGATCAGTGCTACCCCAAGACATGAGCAAACCAGTGAACAAAAGATTGTCCCATGCAGTCAAGAGCTTGGACATGGTGCCCAAGAAAGGAAAATTTGAAGACACAAACCGACCGAACAAGCAGTTTTACCAGATGATTGAAGAGTTCAGAGAGACCTTGGAAGTActtcctttatctctgtctgatATGGTTGAAGCTCGTAGAATTTGTGTGTGCGTTCGCAAGCGTCCTCTCAACAATAAAGAGGTGACTAAGAACGATATTGATGTGGTTTCTATCCCTGGTAATGGAACGCTTCTCCTTCATGAGCCCAAGCAGAAAGTGGACCTGACAAAGTACCTTGACAACCAGGTCTTCCATTTTGACTACTCCTTTGATGAGTCATCCACCAATGACTTAGTGTACAGATTCACTGCCAAGCCCCTTGTCCAGACCATCTTTGATGGTGGGGTGGCAACTTGTTTTGCTTACGGACAAACTGGAAGTGGTAAAACTCATACAATGGGAGGAGATTTTTCAGGGAAAAGCCAGAACAACGCGAAAGGGATCTATGCCATGGCAGCTCAGGATGTATTCGCCCTCCTGAAGCAGAGGAGATATTCCGGTCTGGACCTGTGTCCCTACGTGACATTCTTTGAGATCTACAACAGCAAGGTATTTGATCTGCTGAACAAGAAGGCCAAGCTGCGAGTGCTAGAGGATGAGAAACAACAGGTCCAGGTGGTCGGCCTGCAGGAGATGTACGTTTCGTGTGCTGAAGACGTCATCAAGATGATTGAGATGGGCAGTGCATGCAGGACGTCCGGCCAGACGTCAGCCAACGCCAACTCGTCTCGCTCCCATGCCGTCCTGCAGGTGATCCTGCGAAGGAGGAACCAGGTGCACGGGAAGTTCTCCCTGGTGGACCTAGCAGGGAACGAGAGGGGCATTGACGTTCGCAGTAGCGACAGACAGACCCTCGTAGAGACGGCCGAGATCAACTGCAGCCTGCTGGCTCTCAAGGAATGCATTCGCTCCTTGGGGATGGACAGCCACCACATCCCCTTCAGGATGAGCAAGCTGACACAGGTACTCCGAGACTCCTTCATCGGCGAGAACTCCAGGACATGCATGATTGCAATGGTGTCTCCTGGAATGTCCTCATGCGATTCCACTGTGAACACACTACGCTATGCAGACAGAGTGAAGGAACTGAATGGAACGTTAAAGATGAATGATGCGGATCTTCCCAAGAAGATTGATGAGATGGAAGTGGAGAACAGCTCCTCATCAGAAGAGGACTCCATTGTACCCATGACCGACGTGTATGAGGCCATATCCCAGGTTTctgagctggaggagagggtgcaCGAGGAGTTGACGGGAGCAAGTAACATTATCAAGCAAATGGAGATGCCATCATATGACATTGAGGCTGGGGCGACTGATATTGTGGACTACGCAAGAAAATTACTGGACACGGTCCTGGCATTGCAGTCTGCCATTGATGGAGAGCGACTGGCAAGGATGTCACCCAAATCAGGTTATTGCTGAGAGGGACATCCCTCAACTTGTTCACTTGGGAATAATGTTCTGATAAGTTTTATCATGCAGTAACTATTCATTATTGTTCAATTGGGCATAAATTCCCTTCTGCTAACTTTCATTTAATGGTACATGAAAGAACCTTACCTCTAATGTGTAAAGCCTCTCACTACATACCATAGATCTCTGTGAAAGTATGTTAACAGTTCATGTTTTAAATGGATTTGTATTCAAACTGGAGATTTGTCCAGCATTTAAATGATTTGTGAATATAATAAAGGTATTTACCAATATGTTA
>XM_021613251.2
CATATACCTGTATTCAAAACAGGAAATGCAAACAATATTTCACTATGTCCAAACTATATTCGTTCAAATGTATCGTTATTGGTTATACTCACTGAGCTTAATAAAAAAATGCAATAATACCACATGGCTATGTGGCTACCGAGCTACTTTTTCTGATAGACAATCTTTGAGAACGCCCTTGCTTCAATCAGCATCGCCCTTTTCTACTTCATCCGACGAGAAACTGATTTTAAACATTTGGCGGCGGATTGGGATTTGTTTGGTGCTTGACtgtagccagctaacgttaggttGTATGTAAATAACTTTTAAAAACTTGGCAAGTGAGTTTACGCATTAACATGGATTCAACTATGGCGAAACTTCTTGTTGGACTTTCAGTCAACATCCAAAGAAGCGATGGGCGAGTGCATGCTGCAAATGTCAAATCTGTGGATTCCACAAAGTGTACTGTGACGGTTGAATGGTTAGAGAAATCTGTATGCAGGGGAAAAGAGCTTGAAATTAATGAATTATGGTCCCTGAACAAAGAGCTTTTTGAGCGCATGAAACCAACTAGTATACCTGCTCCTCCGGAGAAGAAATGTGAAAGCCGTCTTCGTTCATCCGGGGTCCCTGCTCCTTCCAGTCTTCCACTTCCAAGAAAGTCTACACGGCAGACATGCTTGTTCCGGACCCTTACTCCTGTCTCTGAGCTTGCTGCTAAGACTAAGCATGACTCCCTGTCTTCAGAGTATCCACCCTCTGTCCTCAAAGCTTCAGGTGTGCCCAACCGAGAGAGGAAAAGGAACAGTCAGAGACCGACTGCTGTCCTGCCCCCAGTCAACGAGGCCCTGAAGGAGAATGAGGCCAAGAGTGTTTCCTCAGTCACCTCAAGCAGACGGAGATCAGTGCTACCCCAAGACATGAGCAAACCAGTGAACAAAAGATTGTCCCATGCAGTCAAGAGCTTGGACATGGTGCCCAAGAAAGGAAAATTTGAAGACACAAACCGACCGAACAAGCAGTTTTACCAGATGATTGAAGAGTTCAGAGAGACCTTGGAAGTActtcctttatctctgtctgatATGGTTGAAGCTCGTAGAATTTGTGTGTGCGTTCGCAAGCGTCCTCTCAACAATAAAGAGGTGACTAAGAACGATATTGATGTGGTTTCTATCCCTGGTAATGGAACGCTTCTCCTTCATGAGCCCAAGCAGAAAGTGGACCTGACAAAGTACCTTGACAACCAGGTCTTCCATTTTGACTACTCCTTTGATGAGTCATCCACCAATGACTTAGTGTACAGATTCACTGCCAAGCCCCTTGTCCAGACCATCTTTGATGGTGGGGTGGCAACTTGTTTTGCTTACGGACAAACTGGAAGTGGTAAAACTCATACAATGGGAGGAGATTTTTCAGGGAAAAGCCAGAACAACGCGAAAGGGATCTATGCCATGGCAGCTCAGGATGTATTCGCCCTCCTGAAGCAGAGGAGATATTCCGGTCTGGACCTGTGTCCCTACGTGACATTCTTTGAGATCTACAACAGCAAGGTATTTGATCTGCTGAACAAGAAGGCCAAGCTGCGAGTGCTAGAGGATGAGAAACAACAGGTCCAGGTGGTCGGCCTGCAGGAGATGTACGTTTCGTGTGCTGAAGACGTCATCAAGATGATTGAGATGGGCAGTGCATGCAGGACGTCCGGCCAGACGTCAGCCAACGCCAACTCGTCTCGCTCCCATGCCGTCCTGCAGGTGATCCTGCGAAGGAGGAACCAGGTGCACGGGAAGTTCTCCCTGGTGGACCTAGCAGGGAACGAGAGGGGCATTGACGTTCGCAGTAGCGACAGACAGACCCTCGTAGAGACGGCCGAGATCAACTGCAGCCTGCTGGCTCTCAAGGAATGCATTCGCTCCTTGGGGATGGACAGCCACCACATCCCCTTCAGGATGAGCAAGCTGACACAGGTACTCCGAGACTCCTTCATCGGCGAGAACTCCAGGACATGCATGATTGCAATGGTGTCTCCTGGAATGTCCTCATGCGATTCCACTGTGAACACACTACGCTATGCAGACAGAGTGAAGGAACTGAATGGAACGTTAAAGATGAATGATGCGGATCTTCCCAAGAAGATTGATGAGATGGAAGTGGAGAACAGCTCCTCATCAGAAGAGGACTCCATTGTACCCATGACCGACGTGTATGAGGCCATATCCCAGGTTTctgagctggaggagagggtgcaCGAGGAGTTGACGGGAGCAAGTAACATTATCAAGCAAATGGAGATGCCATCATATGACATTGAGGCTGGGGCGACTGATATTGTGGACTACGCAAGAAAATTACTGGACACGGTCCTGGCATTGCAGTCTGCCATTGATGGAGAGCGACTGGCAAGGATGTCACCCAAATCAGGTTATTGCTGAGAGGGACATCCCTCAACTTGTTCACTTGGGAATAATGTTCTGATAAGTTTTATCATGCAGTAACTATTCATTATTGTTCAATTGGGCATAAATTCCCTTCTGCTAACTTTCATTTAATGGTACATGAAAGAACCTTACCTCTAATGTGTAAAGCCTCTCACTACATACCATAGATCTCTGTGAAAGTATGTTAACAGTTCATGTTTTAAATGGATTTGTATTCAAACTGGAGATTTGTCCAGCATTTAAATGATTTGTGAATATAATAAAGGTATTTACCAATATGTTA

Function

NR:

description
kinesin-like protein KIF2C isoform X2

GO: NA

KEGG:

id description
K10393 KIF2_24, MCAK; kinesin family member 2/24

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613250.2 False 2738 mRNA 0.46 22 63475792 63494724
XM_021613251.2 True 2706 mRNA 0.46 21 63475792 63494725

Neighbor

gene id symbol gene type direction distance location
LOC110530314 LOC106569080 coding downstream 181089 63292443 ~ 63294703 (-)
LOC110530312 tnn coding downstream 235962 63209032 ~ 63239830 (-)
LOC110530309 LOC106569072 coding downstream 508307 62882950 ~ 62967485 (-)
LOC110530307 LOC106569071 coding downstream 868026 62513304 ~ 62607766 (-)
LOC110530306 LOC106569070 coding downstream 1163299 62299897 ~ 62312493 (-)
kiss1ra LOC106569085 coding upstream 52854 63547579 ~ 63561814 (-)
LOC110530962 LOC106569119 coding upstream 276958 63771683 ~ 63777609 (-)
slc6a9 LOC106569088 coding upstream 308116 63802841 ~ 63885395 (-)
klf17 LOC106569090 coding upstream 394952 63889677 ~ 63892473 (-)
LOC110530324 LOC106599374 coding upstream 490604 63985329 ~ 64157280 (-)
G733454 NA non-coding downstream 9402 63463954 ~ 63466390 (-)
G733504 LOC106599390 non-coding downstream 21896 63453675 ~ 63453896 (-)
G733501 NA non-coding downstream 23414 63452156 ~ 63452378 (-)
G733499 NA non-coding downstream 24389 63451204 ~ 63451403 (-)
G733498 NA non-coding downstream 25001 63450567 ~ 63450791 (-)
G733481 NA non-coding upstream 8704 63503429 ~ 63503662 (-)
G733479 NA non-coding upstream 10940 63505665 ~ 63505981 (-)
G733480 NA non-coding upstream 11382 63506107 ~ 63518354 (-)
G733537 NA non-coding upstream 25172 63519897 ~ 63520201 (-)
G733540 NA non-coding upstream 27785 63522510 ~ 63522793 (-)
LOC110530961 dhx9 other downstream 1290612 62165849 ~ 62185180 (-)
G731764 NA other downstream 1427673 62045035 ~ 62048119 (-)
LOC110530228 LOC106569007 other downstream 5611915 57858233 ~ 57864165 (-)
G726900 NA other downstream 5629103 57820047 ~ 57846689 (-)
G726885 NA other downstream 5664370 57805388 ~ 57811422 (-)
G735880 NA other upstream 1495576 64990301 ~ 65040241 (-)
G736216 NA other upstream 2023442 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 2606371 66101096 ~ 66101627 (-)
LOC110530385 LOC106569212 other upstream 2698929 66192359 ~ 66210028 (-)
G737449 LOC106569204 other upstream 3064471 66559196 ~ 66560517 (-)

Expression


Co-expression Network