kiss1ra (LOC106569085)


Basic Information

Item Value
gene id kiss1ra
gene name LOC106569085
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 63547579 ~ 63561814 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613254.2
GATCTTCGACTTCTTTTCACACATCAAGATGTTCCCTCCAGACGTGTGGAATTCTACAGTCCTGATGTGGTTCAATGCGTCTGAGCTGAATGCTTCTCTGGAGAATCCGGAGGAGGGGGAGCACCCATTCCTGACGGACGCCTGGCTGGTGCCTCTCTTCTTCGCTCTCATCATGCTGGTGGGGCTCATCGGGAACTCTCTGGTAATCTATGTAATCTCCAAACACAGGCAGATGAGGACTGCCACCAACTTCTACATAGCTAACTTGGCTGCCACAGACATCATCTTCCTGGTGTGTTGTGTCCCGTTCACAGCCACTCTCTACCCACTCCCTGGGTGGGTATTTGGGGACTTCATGTGCAAATTTGTTGCCTTTCTACAACAGGTGACTGTTCAAGCCACCTGCATTACACTCACTGCTATGAGTGGGGACCGCTGCTATGTCACAGTCTACCCCCTGAAGTCCTTACGCCATCGCACTACACGAGTCGCCATGGTAGTTAGCATCTGCATATGGATCGGTTCCTTCATTCTATCCACCCCGATTTTCATGTACCAGAGAATTGAGGAGGGCTACTGGTATGGACCAAGACACTACTGCATGGAGAGGTTTCCCTCAAAGACCCAGGAGAGGGCTTTCATCCTGTACCAGTTCATAGCTGCCTACCTACTACCTGTCATCACCATCTCCTTCTGCTACACACTCATGCTGAAGAGGGTGGGCCAGCCGTCAGTGGAACCAGTAGACAATAATTACCAGGTCCACCTGTTGTCTGAGAGGACTGTCACTCTGAGGAGTAAGATCTCcaagatggtggtggtgattgtccTGCTATTCACCATCTGCTGGGGGCCTATCCAGCTCTTCGCCCTGTTCCAGTCCTTCTACCCCAACTACAGGGTCAACTACGCCACCTATAAGATCAAGACCTGGGCTAACTGCATGTCCTACGCTAACTCCTCCATCAACCCAATCGTTTACGGCTTCATGGGAGCCAGTTTCCGCAAGTCTTTCAAGAAGACTTTCCCCTTCCTGTTCAAACACAAAGTTAGAGACAGCAGTGTCATGTCACGCGTGGCTAATGCAGAAATCAAGTTAGTTGCTGCAGAGGAAGGCAACAACGATGGGAAATGAAATGAGCCATGGTCAGAGTGAGCTTCCGGGGGACAGAGCTGCTGGAGATTCAGTTCACtgtgcacacaaacaaacatacacatgACAGACTGCTGTGAATGCACACTGCTCAACATAGCCTGCTGTGAAATCACACTGTTCTGAAGGCAAACACCTGGTGGAACCAGCATTTTAAAATGGTACTTGATGTGTTTGTTTGCAATTCTACAAAATCTGACTGATCCTGCTCTGTTCTGGTATCACAGACTTGAAAGGACATTAAAGGTCCCGAAACAGTCATTCTGGTTCCCATATAAAATAACAACACCCATAATATTTTTTCCTGATAAAGCAAATTTCTCTCGTCAAACCAGGAAGTCTGAAAAGACATACTGAAtggagctagtaggctgagtgggcggggagctcaCCTTGACTGACTGTTCTTTGAAAAAGTCTAGCAACATGGATGCAGTGACATTATCTCAAGCATATTTGCTGATACACAAAACAACTCAAACATCATTGAAATTGCATGCAACTTCCAATCCTGTCATACATCACATCACGGTGTCATTCCTGCTCCCTCCCCCCAGTGCTCGACGTCGCCGGTCAACAAACCTCCGGTCGTGGCAACTCacattgcgcacacctggcaaccacaCACCTGCTCATCATTTGCTCCTTGATTACTCCCCCTTTACTTAGCTCTCACTTGTCATCAGTCATTAGGTGGTATTGTTCTCTCGCACGGTCAGTATGTGGCTTATGTTTGTTCTTGTTTATAATtgtattattaaactcacctccTGCTTCCTGA

Function

NR:

description
G-protein coupled receptor 54-like

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008188 neuropeptide receptor activity molecular_function

KEGG:

id description
K08374 KISS1R; KISS1 receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613254.2 True 1934 mRNA 0.48 5 63547579 63561814

Neighbor

gene id symbol gene type direction distance location
LOC110530317 LOC106569084 coding downstream 52854 63475792 ~ 63494725 (-)
LOC110530314 LOC106569080 coding downstream 252876 63292443 ~ 63294703 (-)
LOC110530312 tnn coding downstream 307749 63209032 ~ 63239830 (-)
LOC110530309 LOC106569072 coding downstream 580094 62882950 ~ 62967485 (-)
LOC110530307 LOC106569071 coding downstream 939813 62513304 ~ 62607766 (-)
LOC110530962 LOC106569119 coding upstream 209869 63771683 ~ 63777609 (-)
slc6a9 LOC106569088 coding upstream 241027 63802841 ~ 63885395 (-)
klf17 LOC106569090 coding upstream 327863 63889677 ~ 63892473 (-)
LOC110530324 LOC106599374 coding upstream 423515 63985329 ~ 64157280 (-)
tmem53 LOC106569260 coding upstream 738417 64300231 ~ 64301927 (-)
G733806 NA non-coding downstream 1698 63544244 ~ 63545881 (-)
G733540 NA non-coding downstream 24786 63522510 ~ 63522793 (-)
G733537 NA non-coding downstream 27378 63519897 ~ 63520201 (-)
G733480 NA non-coding downstream 29225 63506107 ~ 63518354 (-)
G733479 NA non-coding downstream 41598 63505665 ~ 63505981 (-)
G733841 atp6v0b non-coding upstream 41450 63603264 ~ 63612708 (-)
G733895 NA non-coding upstream 132003 63693817 ~ 63696281 (-)
G733919 NA non-coding upstream 166970 63728784 ~ 63729801 (-)
G733921 NA non-coding upstream 195518 63757332 ~ 63760474 (-)
G733941 NA non-coding upstream 207050 63768864 ~ 63769070 (-)
LOC110530961 dhx9 other downstream 1362399 62165849 ~ 62185180 (-)
G731764 NA other downstream 1499460 62045035 ~ 62048119 (-)
LOC110530228 LOC106569007 other downstream 5683702 57858233 ~ 57864165 (-)
G726900 NA other downstream 5700890 57820047 ~ 57846689 (-)
G726885 NA other downstream 5736157 57805388 ~ 57811422 (-)
G735880 NA other upstream 1428487 64990301 ~ 65040241 (-)
G736216 NA other upstream 1956353 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 2539282 66101096 ~ 66101627 (-)
LOC110530385 LOC106569212 other upstream 2631840 66192359 ~ 66210028 (-)
G737449 LOC106569204 other upstream 2997382 66559196 ~ 66560517 (-)

Expression


Co-expression Network