tmem53 (LOC106569260)


Basic Information

Item Value
gene id tmem53
gene name LOC106569260
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64300231 ~ 64301927 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613283.2
GGGAAAACGAACCAATCAGAAACAATGAACGAACTCTTGACTTCCGTAGCGACTAGCGAACCTGCGAGAACGTTAAGGTTCAGCGCATCAGCCAAATGAATCGTATAGCAAAAGGGCTCATTGTTCTGTAATATAATCGGCTACAGAATGGAAGATGATGGCATGGACTATAACATTGTGTTTCCAGATGCATTGATCTCGGAAAGACACTGGCATGGAACAAAGGAACCAGTTGTCATACTGCTGGGATGGGCTGGTTGCAGAGACAAACATCTTGCCAAGTACAGCTCCATTTATAACGAACAGGGTTGTGTCACTATTTGCTATACTGCGCCCTTGAAGACAGTATTCGTCTCTGAATCATTTGGCTACAAGGAGCTGAGTAATACTGCCCACAAACTACTTGAGATACTCTATGATTACGAGGTGGAAAACAGCCCTATATTTTTCCACGTGTTCAGCAACGGGGGATTCATGCTGTACCGCTACATTGTTGAGCTCTTGCACAGTCATAAACAGTTCAGTACCCTATGTATAGTTGGGACTGTGGTGGACAGTGCCCCAGGCAGTGGAAATGTGAGGGGGGCATTACGGGCTCTTACAGCCACTCTGGGACCCAAAATCAATGTGATGTTGAGGTGTGTTCTCTTGGCACTGTTTGCTGTAACTGTTTTCCTGCTTAGGGTGGTTCTGTACCCCATAACCAAGTACATCCACAAGAACCACTATGATGCCATCTGGGAGCACCCTCCTACCTGGCCCCAGCTGTACCTGTACTCCAGAGCTGATCGAGTGATTCGGTACAGTGATGTTGAGCTCATGGTCAAGACTCTAAAGGAGAAAGGGGTGTCTGTGGAAAGCTTTGACTTCAAAACCCCTGCCCACGTGAGCCATTTCCGTGACTTTCCAGAGGAGTACTCCAAGAGATGCCTGGATTTCCTGACCAACTGCATGAAGGATTCAACAGCGCAAATAAAAAAGCGACACTTGATCCAGCATTGAAAGCACACTAATTAATGTTTCTCAAAAGTTTGTGGCACTTATGTTTTTGTGATTCTACTGTAATGTTACACATGTATAAATCTGTACTTGGAAATCTGCAGCTCCACTGAACATCTTATTTCAAATGCTTAAGTTTTAAGAGTTGAAGACAATTAAGCAAAAATAGACAAGTGATAACCAAAGTGCCAGTGCTGTGAATTTTGATTGGTACTATTTGTGAATCTTTAATCCAGTGATTGATATTTCAAAAGAATGTGATTGACTAAGAATGTATGTACTTACTAAACACGTGTCTAACTATTGTGCCTTCTATAAATTAAAGAAGCGTTATGTCAACATTT

Function

NR:

description
transmembrane protein 53 isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613283.2 True 1343 mRNA 0.43 3 64300231 64301927

Neighbor

gene id symbol gene type direction distance location
LOC110530324 LOC106599374 coding downstream 142951 63985329 ~ 64157280 (-)
klf17 LOC106569090 coding downstream 407758 63889677 ~ 63892473 (-)
slc6a9 LOC106569088 coding downstream 414836 63802841 ~ 63885395 (-)
LOC110530962 LOC106569119 coding downstream 522622 63771683 ~ 63777609 (-)
kiss1ra LOC106569085 coding downstream 738417 63547579 ~ 63561814 (-)
LOC110530326 toe1 coding upstream 34758 64336685 ~ 64341073 (-)
LOC110530331 LOC106569255 coding upstream 203990 64505917 ~ 64511226 (-)
LOC110530332 LOC106569254 coding upstream 209629 64511556 ~ 64528668 (-)
LOC118965543 NA coding upstream 230344 64532271 ~ 64538968 (-)
LOC110530333 NA coding upstream 237105 64539032 ~ 64544585 (-)
G734453 LOC100194703 non-coding downstream 17074 64282876 ~ 64283157 (-)
G734405 NA non-coding downstream 59293 64240730 ~ 64240938 (-)
G734401 NA non-coding downstream 65225 64234660 ~ 64235006 (-)
G734390 NA non-coding downstream 75258 64224666 ~ 64224973 (-)
G734368 NA non-coding downstream 93176 64206843 ~ 64207055 (-)
G734564 LOC106569295 non-coding upstream 50914 64352841 ~ 64353425 (-)
G734574 NA non-coding upstream 58395 64360322 ~ 64360765 (-)
G734886 NA non-coding upstream 196366 64498293 ~ 64500953 (-)
G734833 NA non-coding upstream 200434 64502361 ~ 64503279 (-)
G734830 NA non-coding upstream 244518 64546445 ~ 64549891 (-)
LOC110530961 dhx9 other downstream 2115051 62165849 ~ 62185180 (-)
G731764 NA other downstream 2252112 62045035 ~ 62048119 (-)
LOC110530228 LOC106569007 other downstream 6436354 57858233 ~ 57864165 (-)
G726900 NA other downstream 6453542 57820047 ~ 57846689 (-)
G726885 NA other downstream 6488809 57805388 ~ 57811422 (-)
G735880 NA other upstream 688374 64990301 ~ 65040241 (-)
G736216 NA other upstream 1216240 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 1799169 66101096 ~ 66101627 (-)
LOC110530385 LOC106569212 other upstream 1891727 66192359 ~ 66210028 (-)
G737449 LOC106569204 other upstream 2257269 66559196 ~ 66560517 (-)

Expression


Co-expression Network