LOC110530326 (toe1)


Basic Information

Item Value
gene id LOC110530326
gene name toe1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64336685 ~ 64341073 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613279.2
GTGTTGCTGGTGTACAATCTGTAAGGACCCATTCAGACCACGTTGGTTGGATGTTTACAGCTGCGCTTAATTCTTGCCAAGAATTTGGGTCTTCCTCCCTGAAAACGATTGTTGAGAAACGAATCAATGCAATCCGACAAACGAAGAATAACGCATAGTAGTGAACAGGAAGCTTTCACTGGACAACCGAAAACCTTTTGCAATGAGCTCCCTGATCATTCAATAAGTCTAATCACTCCCCATGTtcagttagctaactagcttacACTGAGTTGAACATTTTGGTTGTGTTccatatattaactagttagctaTGACATCCTCCATGATAGTCCCTGTTATTGATGTGCAAAATGATAATTTCAAAGAACTGTGGCCTGCTATGGTCCTTGCAATCAAGACAGCCTCCTTCATTGCACTGGATACAGAATTGAGTGGGCTTGGAAGCAGAAAAGCTCTGCTGGCAGAATGCATAGAGGACCGTTACAAAGCCATATGTAATGCAGCTCGCACACGCTCCATTCTCTCCCTTGGGTTTGCTTGCTTTAAGAAACTTGAAAACAAGGATGATGATACGTACCTTGTTCAGGTGTACAACCTGACATTGCTCTGCAGTGAGGAGTATGTAATTGAACCACAATCTGTGCAGTTCCTGGTGCAACATGGATTTGACTTCAACAAACAATATGCTGAGGGTGTCCCTTATCTCAAGGGCAATGACAAGGGAGGGGATTCCCATGGAATAAACATGCGGATGCTGTTTGTGGAACTCCTGCGTGCTCGCAAGCCATTGGTTCTACACAATGGTTTGATCGACATGGTGTTCCTGTATCAGTGCTTCTATGCCCACCTGCCAGATAAACTTGGCACTTTCACTGCTGACCTGTCCCAGATGTTCCCAGCTGGGATATATGACACCAAGTACGCCACAGAGTATGAGCTGCGCTTTGCTGCCTCTTACCTGGAGTATGCCTACAAGAAATGTAAATTGGACAACAGCAAGTCTCTTGAGGTTGGTGGTAATGGGCACCATCTGTTCCTGGAGTTCTGCAAATACTCAGGCCACCTGTCCAGCTATGTGGACTTCAGGCCCTGCCTGGCCGGGTCTAGCCTGGAGGGACCGCTGAATGTCTGCCAGCGTTTCTCTGCTTACGGTTGGTGCCCCAATGGGTCACAGTGTCCCTTGTCACATGACACTGACCTCATCATCCAGCACGATGAAAAAAACAAGGTGGAAAAGAAAAAGAAACGGAAGAGGAAAAGAAAAAACTCTTCTCAGGGAAACGTGGACTTTGAAGGTGCCTCCGAGAATAAGCAGGCCCatatggagctggaggatggagaGCAGGGCCCGGACCAGGTGATCCCTGACACAGACAGCAAACCTCCCCCTGCTACAGAGCAGGTAGATGGGACTCCGGTACAGGGGTCAGAGAGCGGTGAGAAAATGATAACCGAGAAGGTAGAGGAAGGCAACGGAGTCGCAGAGCCACAGGCTGTGTCTGCAGATGAAGAAATTAAGACTGACAAAGAAAAGGTGGAAGGCAATGATGTGTCAGAGCCACAGCCTCTGGCCACATCTGATGCAGCGAAGAAAGAAAAGTCCAAGAGGAAGAAGCTGGAAGGAGGTTCCCACCGGGCAGGGTTCGATGCATTCATGACCGGCTACATCTTCTCCTACGCCgccactctgacagagagagTAGGTGAGCCACCGTGTTCAGAGTCCTGGCTCCCTGAGTGCCTGAACAAAGTTTACCTCAGTGGCAAATGTGTCCCGATGCATATTGTCAAGAGCACCTTCTCCAAGTCCTCCAAGGCTCACATGCACAAGATGGACATTGTGTGGGGAAAAAGCTTTTCTAGCAGTGCAGAGGGAACTATATAAACATTCAATGGAACCAAATGTATTCCTCGTTTATAATAAAGCCTTTTTAGTTAGACATGCTTTGTTGCACATCTTAAATCTTTGTTGATACAGTATTATGTTTCAATAAAAAGGCTTTTCCTTGGTTATATGACAAA

Function

symbol description
toe1 Predicted to enable 3'-5'-exoribonuclease activity and snRNA binding activity. Acts upstream of or within brain development and neuron cellular homeostasis. Predicted to be active in Cajal body and cytoplasm. Used to study pontocerebellar hypoplasia. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 7. Orthologous to human TOE1 (target of EGR1, exonuclease).

NR:

description
target of EGR1 protein 1-like

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K13202 TOE1; target of EGR1 protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613279.2 True 2025 mRNA 0.47 7 64336685 64341073

Neighbor

gene id symbol gene type direction distance location
tmem53 LOC106569260 coding downstream 34758 64300231 ~ 64301927 (-)
LOC110530324 LOC106599374 coding downstream 179405 63985329 ~ 64157280 (-)
klf17 LOC106569090 coding downstream 444212 63889677 ~ 63892473 (-)
slc6a9 LOC106569088 coding downstream 451290 63802841 ~ 63885395 (-)
LOC110530962 LOC106569119 coding downstream 559076 63771683 ~ 63777609 (-)
LOC110530331 LOC106569255 coding upstream 164844 64505917 ~ 64511226 (-)
LOC110530332 LOC106569254 coding upstream 170483 64511556 ~ 64528668 (-)
LOC118965543 NA coding upstream 191198 64532271 ~ 64538968 (-)
LOC110530333 NA coding upstream 197959 64539032 ~ 64544585 (-)
LOC110530335 LOC106569249 coding upstream 216224 64557297 ~ 64620048 (-)
G734453 LOC100194703 non-coding downstream 53528 64282876 ~ 64283157 (-)
G734405 NA non-coding downstream 95747 64240730 ~ 64240938 (-)
G734401 NA non-coding downstream 101679 64234660 ~ 64235006 (-)
G734390 NA non-coding downstream 111712 64224666 ~ 64224973 (-)
G734368 NA non-coding downstream 129630 64206843 ~ 64207055 (-)
G734564 LOC106569295 non-coding upstream 11768 64352841 ~ 64353425 (-)
G734574 NA non-coding upstream 19249 64360322 ~ 64360765 (-)
G734886 NA non-coding upstream 157220 64498293 ~ 64500953 (-)
G734833 NA non-coding upstream 161288 64502361 ~ 64503279 (-)
G734830 NA non-coding upstream 205372 64546445 ~ 64549891 (-)
LOC110530961 dhx9 other downstream 2151505 62165849 ~ 62185180 (-)
G731764 NA other downstream 2288566 62045035 ~ 62048119 (-)
LOC110530228 LOC106569007 other downstream 6472808 57858233 ~ 57864165 (-)
G726900 NA other downstream 6489996 57820047 ~ 57846689 (-)
G726885 NA other downstream 6525263 57805388 ~ 57811422 (-)
G735880 NA other upstream 649228 64990301 ~ 65040241 (-)
G736216 NA other upstream 1177094 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 1760023 66101096 ~ 66101627 (-)
LOC110530385 LOC106569212 other upstream 1852581 66192359 ~ 66210028 (-)
G737449 LOC106569204 other upstream 2218123 66559196 ~ 66560517 (-)

Expression


Co-expression Network