LOC110530331 (LOC106569255)


Basic Information

Item Value
gene id LOC110530331
gene name LOC106569255
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64505917 ~ 64511226 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613292.2
ATGACTTTCTAAAGATGGCCGCGCCCTGTAGCCGAGGGGTGTGACATAATTTTAGTTGTACAACATTCTGGATGATAGTTAAGAAGCAGGCAGCATTGTGCCACTGACATCTAGGACACGTAAACATAATTTCTACACTTTCTCAACCATTGTATCATCTGTCCCATCATGGAAAATGACGATCTAATACTCCCCAAAGACTTCCCTAAGTTGAAGAATGATGCATTCCTCCGTGCATGCCATGGCCAGGAGACCAATCATGTGCCTGTGTGGTGTATGAGACAGGCTGGACGCTACCTGCCAGAGTTCCGTGAGTTCAGAGCTGGGAAGGACTTCTTTGAAACTTGTCGGTCACCTGCAGCCTGCTGCGAACTCACTCTCCAGccattgagACGTTTCCCATTTGATGCTGCCATCATCTTCTCAGATATCCTGGTTATCCCACAGGCCATGGGTATGGATGTCCAGATGGTGGCAGGAAAGGGCCCTACGTTCCCAGAGCCCCTAAAGGAGCCAGAGGACCTGCTGCTCCTGCAGCCCAAGGTGGACGTCAACAAGGAGCTGGGCTATGTCTTCAAGGCCATCACATTGACACGCCACAAACTGGATGGCAAGGTCCCTCTGATCGGCTTCACTGGTGCCCCgTGGACCCTAATGGCCTATATGATTGAGGGGGGAGGCTCAACAACCCACTCCAAGGCTAAGCGCTGGCTGTACCGCCACCCTGAGGCCAGCCACAAGCTGCTAAAGATGCTGACAGATGTCATCGTAGTGTACCTGCTGGGACAAGTGGCTGCTGGGGCACAGGCTTTGCAGGTGTTTGAGTCCCATGCTGGCTGTCTGGGCCCAGTGGAGTTCCAGGAGTTCTCCCTGCCCTACCTCCGAGACATCGCCCGTAAGGTCAAGGACCAGCTGAAGGAGTCAGGCCAGGATGTCCCCATGATTGTGTTTGCCAAGGACGGCCACTATGGTCTGGAGGACCTCTCTCAGTCCCACTATGAGGTTGTTGGTTTGGATTGGACCATCGATCCACGCTCAGCACGAGAGCGGACGGGAGGAAAGGTTAGTCTCCAGGGGAACATGGACCCCTGTGCACTCTATGCCCCCAAGGAGCGTATATCAGAGATAGTGAAGAAGATGCTGGAAGGCTTTGGGACCAGAGGGTACATAGCCAACCTGGGCCACGGGCTGTACCCTGACATGGACCCAGAGAATGTGGGTGCCTTTGTAGAAGCTGTCCACACTCACTCTCGCCACCTCAATCTCAAGTAACACCCCCGTCACCAGGCAACATTGACCACAGTCATCATACTAGCAGAGAGCAGCGCCCAAAGAACTAAGCAACATTGCATTGGTTTATAGAGACAATGTATCATGTATTCACAGAAATCCAATCTACCAACAGGTCTTATCAAGTATGTTATCCCAGGACAAATCCAGACTTACGCTATTCCACAaacaatcagccgtttccagttacaatagtcatttacaacatgaacaatgtctacactgtatttctgatcaatttgctgttattttaatggacaaaaaatgtgcttttctttcaaaaacgaggacatttaagtgaccccaaacttttgaacggtagtgtgtgatTTTTCTATTATAAATCATATTTTGGTTATATTCTATAGATAATCCTTGGACAAAAGAAAAACGTAGTGCACGACCTTGTAATATTTCCTATGTGTACCTCTGCTCCGTTTTTTCATCAGGTACTTCATCTTACAACAACATGAAGGGTTTAATGTGATTATCTTGAAAGGTTGTGTGTTGGTCTCATGGCCAACACTGTTGTTTGACTGTGACAAATGTACTAAAGCATAAGCACTTGTGTTTA

Function

NR:

description
uroporphyrinogen decarboxylase-like

GO:

id name namespace
GO:0006782 protoporphyrinogen IX biosynthetic process biological_process
GO:0004853 uroporphyrinogen decarboxylase activity molecular_function

KEGG:

id description
K01599 hemE, UROD; uroporphyrinogen decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613292.2 True 1864 mRNA 0.48 10 64505917 64511226

Neighbor

gene id symbol gene type direction distance location
LOC110530326 toe1 coding downstream 164844 64336685 ~ 64341073 (-)
tmem53 LOC106569260 coding downstream 203990 64300231 ~ 64301927 (-)
LOC110530324 LOC106599374 coding downstream 348637 63985329 ~ 64157280 (-)
klf17 LOC106569090 coding downstream 613444 63889677 ~ 63892473 (-)
slc6a9 LOC106569088 coding downstream 620522 63802841 ~ 63885395 (-)
LOC110530332 LOC106569254 coding upstream 330 64511556 ~ 64528668 (-)
LOC118965543 NA coding upstream 21045 64532271 ~ 64538968 (-)
LOC110530333 NA coding upstream 27806 64539032 ~ 64544585 (-)
LOC110530335 LOC106569249 coding upstream 46071 64557297 ~ 64620048 (-)
LOC110530336 LOC106569248 coding upstream 119719 64630945 ~ 64640936 (-)
G734833 NA non-coding downstream 2638 64502361 ~ 64503279 (-)
G734886 NA non-coding downstream 4964 64498293 ~ 64500953 (-)
G734574 NA non-coding downstream 145152 64360322 ~ 64360765 (-)
G734564 LOC106569295 non-coding downstream 152492 64352841 ~ 64353425 (-)
G734523 NA non-coding downstream 155425 64286169 ~ 64350492 (-)
G734830 NA non-coding upstream 35219 64546445 ~ 64549891 (-)
G734828 NA non-coding upstream 35672 64546898 ~ 64547693 (-)
G734892 NA non-coding upstream 58926 64570152 ~ 64570636 (-)
G734893 NA non-coding upstream 59605 64570831 ~ 64571111 (-)
G734917 NA non-coding upstream 90374 64601600 ~ 64601960 (-)
LOC110530961 dhx9 other downstream 2320737 62165849 ~ 62185180 (-)
G731764 NA other downstream 2457798 62045035 ~ 62048119 (-)
LOC110530228 LOC106569007 other downstream 6642040 57858233 ~ 57864165 (-)
G726900 NA other downstream 6659228 57820047 ~ 57846689 (-)
G726885 NA other downstream 6694495 57805388 ~ 57811422 (-)
G735880 NA other upstream 479075 64990301 ~ 65040241 (-)
G736216 NA other upstream 1006941 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 1589870 66101096 ~ 66101627 (-)
LOC110530385 LOC106569212 other upstream 1682428 66192359 ~ 66210028 (-)
G737449 LOC106569204 other upstream 2047970 66559196 ~ 66560517 (-)

Expression


Co-expression Network