LOC110530332 (LOC106569254)


Basic Information

Item Value
gene id LOC110530332
gene name LOC106569254
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64511556 ~ 64528668 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613293.2
CCAGGAAGTTACAGTAACAAAAAAAATCCCGACAATTTAACATATGAATTTCCTCATTCTGTTCGGTGAATGTAACAGTCTATGACAGTCCATTCTCGGCTCTAATGAAGAGCAAGACATACGAAAGTTACGGATTACAactatttttctttatttggctAAAACGCATCTATAACTAGTGAAATTTGACAGACAACATGGGTTGTAAAAAATCCAAGCTAAATGACGGTCTAAATGGGAGTGTGCTTGATGGCAAGAACCAACGGCCAGTACGTCCTGACCAAACTGTATATGTGAGAGATCCCACCTCCAGTAAACCAAATGCTACAAGTAACTCACCTCCTGGAGGTCTCCTGCCTGGTCAGGTATTCATGAAAATGGAAGAGCAATCTGAGTCTGGTAAAATAGTTATTGCACTATACCCATATGATGCAAAACACAAAGACGATTTGGGATTCAAGAAGGGGGAAAGGCTTAAGGTTCTTGAAGAGCATGGTGAATGGTGGAAGGCTCAGTCTCTGACCTCTAAGAAAGAAGGGTTCATACCCTCCAATTATGTTGCTGAGGCCAATACCATGGAGACAGAGGAATGGTTTTTTAAGGATATTACAAGGAAGGACGCAGAGAGACAACTTTTGGCGCCTGCAAACAGAGCAGGATCTTACCTCATTCGTGAGAGTGAGACATCAAAGGGAAGTTATTCCATGTCTATCAGAGATGTGGATGCCCAAGGGACGGACGCTGTGAAACATTATAAGATCCGGATGCTGGATAACGGAGGCTTCTACATCTCTCCTAAAATCACATTCCCTGACATTGGTAGCATGATAAAACATTATCACAAACAATCGGATGGTCTCTGTCGAAAGCTGGAGAAGGCCTGTGATAAACCCAAAGCTCAGAAGCCATGGGACAAAGATGCCTGGGAGATCTCCAAGGAGTCCATCAAGATGGTGAAGAAACTAGGAGCCGGACAATTTGGTGAAGTTTGGATGGCGTTCTACAACAACACGACTAAGGTGGCAGTGAAGACACTGAAGCCAGGCACCATGTCAGCTGAGGCCTTCATGGAGGAGGCTAACCTGATGAAGACCCTGCAACACGACAGACTGGTGCGCCTCTACGCCGTCGTCACCAAGGTCGAGCCTATCTACATCATCACAGAGTACATGTCCAATGGTAGCCTCTTAGATTTCCTAAAAAGTGAGGTAGGCTGCAAAGTTCAGCTACCTAAGCTCATCGATTTCTCTGCACAGATTGCGGAGGGAATGGCTTACATTGAGAAGAAGAACTACATCCACCGTGACCTGAGAACAGCCAATGTCCTGGTGTCTGAGAGTTTGCTGTGTAAAATAGCTGACTTTGGCCTTGCTAGAGTTATAGAAGATGACCAGTACACAGCCAGAGAGGGTGCAAAGTTTCCCATCAAGTGGACAGCACCAGAGGCCATCAACTATGGATCCTTCACTATCAAATCAGACATGTGGTCCTTTGGAGTCCTCCTGTATGAAATCATTACCTATGGAAAAATACCTTACCCAGGGATGAGTAATGGTGAGGTGATGACTTCAGTGCAGAGAGGTTATAGAATGCCCCGCCCTGAGAACTGTCCCAACGAGCTCTATGACATAATGACCAGTTGTTGGAAGAGCAAGCCAGATGACAGGCCTACATTTGACTACATCCAGAGTGTCCTAGATGACTTTTACACTGCCACAGAGGGCCAGTACCAACAGCAGCCCTAGGAAGTCAATGGTTGAGTCCCaatagggctctggccaaaagtagtgcactatgtaggggatagggtgtcatttgggatgtacaAAAATCTGCCAATGTGCTAGTTTCATTATGAAATAGTCAATCCACCAGCAACAATATCAGCTATTCAGCGGAAGTAGAGATATTGTCGGACAAGTTGACTGCTTGTTTATTTGTTAGGCAAGCTAAAGATGAATCTATGAACTCAACTTCATATTGAAGTATAGACCTGCTTGTGCATTTCAGCATTTCACGGAAAATGATCGAATAACAAATGGCTTACTGTTGACTGACTCTGATCAAACCTGTAGAATATCACATTGAACAGCACAAAATAGATAGACATTCTACCACGTATTTATTATCACTTTAGCCATATCTGTTTGCCATGTTGAATTCAATCACACATTTTACCAGTACAGATGCTTACCTTTTCATCTATTACATTTCTATTTTTCTTTGTATTTCAAGGTACATTGATTTATTTTAGCAGCTGATCTTTTGGGTTATTttctgaattacagaaataatgagactaatgatttatttcatgtatatttgttgtatttttgttttttttgcaatgAGATATTGACGTGTGACATCACGTGATTGTATTAACCTGAATAAATGCAAATGATCTGTATCAATAAAAATACTTATTTGCAGATG
>XM_021613294.2
gctgaatagaaggaAGTCCCTGTAGCAATATTTCAACATGCAGTgtaaagcctttccagaagagtggaggctgttctagCAGCACAGTGGGGTGGGGCTACTCCATaataatgctcatgattttggaatgagatgttcgacaagtatgtgtccacatacttttgatcgtGTAGTGTATGAATGTTAGcgagttattgatttcatgaaccttatttctaaggcgaaatatattaatatgggctattttcagccctttcctgggtagcttatctgAGATAGATATAATATGAAAAAGAGCAGTCAAAGCAAGAGAAAAAgtatacattcagcagtccatgaatcagttggtgtgtgtgttaagaGTGTGCTGCAGGGTTGAagctacgaacccataggcttggctctcatCCATTCCAGGCtttttgggagggagggtggacaatgagcctgtcatagcgtATGTAAGAAATGCCCCCTCTTGCTCTGGccgctttcatggctgggataagttctttcctcttctggcacgcagagaggcagagtggcagagacagacagtgacagggcAAGCAGTATGAAGGCTAACTAGCTAGGAGTGAATGTAAAGGCAGGAACTTGGGATGCACTGTTGGTTTTGTTGGTGCGCTGTTCTTTGCTTGACAAAGTAAGTTAGCTATCTTTTAAATTTCACTAGTATTTACTATTTACACGCATTGTAGCATTCTATTATAAGACTTGAAATGCCCTCTAACAGACACAGTTGTTTTCCTTAACTGTTAATACTTTTGACATTTTCAGGTTGTCCAAAATGATATCCGATAATATTGTGTACTTCCTGCCACTTAATGCAGACATGTATCAGACAACATGGGTTGTAAAAAATCCAAGCTAAATGACGGTCTAAATGGGAGTGTGCTTGATGGCAAGAACCAACGGCCAGTACGTCCTGACCAAACTGTATATGTGAGAGATCCCACCTCCAGTAAACCAAATGCTACAAGTAACTCACCTCCTGGAGGTCTCCTGCCTGGTCAGGTATTCATGAAAATGGAAGAGCAATCTGAGTCTGGTAAAATAGTTATTGCACTATACCCATATGATGCAAAACACAAAGACGATTTGGGATTCAAGAAGGGGGAAAGGCTTAAGGTTCTTGAAGAGCATGGTGAATGGTGGAAGGCTCAGTCTCTGACCTCTAAGAAAGAAGGGTTCATACCCTCCAATTATGTTGCTGAGGCCAATACCATGGAGACAGAGGAATGGTTTTTTAAGGATATTACAAGGAAGGACGCAGAGAGACAACTTTTGGCGCCTGCAAACAGAGCAGGATCTTACCTCATTCGTGAGAGTGAGACATCAAAGGGAAGTTATTCCATGTCTATCAGAGATGTGGATGCCCAAGGGACGGACGCTGTGAAACATTATAAGATCCGGATGCTGGATAACGGAGGCTTCTACATCTCTCCTAAAATCACATTCCCTGACATTGGTAGCATGATAAAACATTATCACAAACAATCGGATGGTCTCTGTCGAAAGCTGGAGAAGGCCTGTGATAAACCCAAAGCTCAGAAGCCATGGGACAAAGATGCCTGGGAGATCTCCAAGGAGTCCATCAAGATGGTGAAGAAACTAGGAGCCGGACAATTTGGTGAAGTTTGGATGGCGTTCTACAACAACACGACTAAGGTGGCAGTGAAGACACTGAAGCCAGGCACCATGTCAGCTGAGGCCTTCATGGAGGAGGCTAACCTGATGAAGACCCTGCAACACGACAGACTGGTGCGCCTCTACGCCGTCGTCACCAAGGTCGAGCCTATCTACATCATCACAGAGTACATGTCCAATGGTAGCCTCTTAGATTTCCTAAAAAGTGAGGTAGGCTGCAAAGTTCAGCTACCTAAGCTCATCGATTTCTCTGCACAGATTGCGGAGGGAATGGCTTACATTGAGAAGAAGAACTACATCCACCGTGACCTGAGAACAGCCAATGTCCTGGTGTCTGAGAGTTTGCTGTGTAAAATAGCTGACTTTGGCCTTGCTAGAGTTATAGAAGATGACCAGTACACAGCCAGAGAGGGTGCAAAGTTTCCCATCAAGTGGACAGCACCAGAGGCCATCAACTATGGATCCTTCACTATCAAATCAGACATGTGGTCCTTTGGAGTCCTCCTGTATGAAATCATTACCTATGGAAAAATACCTTACCCAGGGATGAGTAATGGTGAGGTGATGACTTCAGTGCAGAGAGGTTATAGAATGCCCCGCCCTGAGAACTGTCCCAACGAGCTCTATGACATAATGACCAGTTGTTGGAAGAGCAAGCCAGATGACAGGCCTACATTTGACTACATCCAGAGTGTCCTAGATGACTTTTACACTGCCACAGAGGGCCAGTACCAACAGCAGCCCTAGGAAGTCAATGGTTGAGTCCCaatagggctctggccaaaagtagtgcactatgtaggggatagggtgtcatttgggatgtacaAAAATCTGCCAATGTGCTAGTTTCATTATGAAATAGTCAATCCACCAGCAACAATATCAGCTATTCAGCGGAAGTAGAGATATTGTCGGACAAGTTGACTGCTTGTTTATTTGTTAGGCAAGCTAAAGATGAATCTATGAACTCAACTTCATATTGAAGTATAGACCTGCTTGTGCATTTCAGCATTTCACGGAAAATGATCGAATAACAAATGGCTTACTGTTGACTGACTCTGATCAAACCTGTAGAATATCACATTGAACAGCACAAAATAGATAGACATTCTACCACGTATTTATTATCACTTTAGCCATATCTGTTTGCCATGTTGAATTCAATCACACATTTTACCAGTACAGATGCTTACCTTTTCATCTATTACATTTCTATTTTTCTTTGTATTTCAAGGTACATTGATTTATTTTAGCAGCTGATCTTTTGGGTTATTttctgaattacagaaataatgagactaatgatttatttcatgtatatttgttgtatttttgttttttttgcaatgAGATATTGACGTGTGACATCACGTGATTGTATTAACCTGAATAAATGCAAATGATCTGTATCAATAAAAATACTTATTTGCAGATG

Function

NR:

description
tyrosine-protein kinase Lyn-like

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0090022 regulation of neutrophil chemotaxis biological_process
GO:0009611 response to wounding biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K05854 LYN; tyrosine-protein kinase Lyn

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613293.2 False 2436 mRNA 0.42 13 64511556 64523457
XM_021613294.2 True 3106 mRNA 0.42 13 64511556 64528668

Neighbor

gene id symbol gene type direction distance location
LOC110530331 LOC106569255 coding downstream 330 64505917 ~ 64511226 (-)
LOC110530326 toe1 coding downstream 170483 64336685 ~ 64341073 (-)
tmem53 LOC106569260 coding downstream 209629 64300231 ~ 64301927 (-)
LOC110530324 LOC106599374 coding downstream 354276 63985329 ~ 64157280 (-)
klf17 LOC106569090 coding downstream 619083 63889677 ~ 63892473 (-)
LOC118965543 NA coding upstream 3603 64532271 ~ 64538968 (-)
LOC110530333 NA coding upstream 10364 64539032 ~ 64544585 (-)
LOC110530335 LOC106569249 coding upstream 28629 64557297 ~ 64620048 (-)
LOC110530336 LOC106569248 coding upstream 102277 64630945 ~ 64640936 (-)
LOC110530340 LOC106569246 coding upstream 129177 64657845 ~ 64665706 (-)
G734833 NA non-coding downstream 8277 64502361 ~ 64503279 (-)
G734886 NA non-coding downstream 10603 64498293 ~ 64500953 (-)
G734574 NA non-coding downstream 150791 64360322 ~ 64360765 (-)
G734564 LOC106569295 non-coding downstream 158131 64352841 ~ 64353425 (-)
G734523 NA non-coding downstream 161064 64286169 ~ 64350492 (-)
G734830 NA non-coding upstream 17777 64546445 ~ 64549891 (-)
G734828 NA non-coding upstream 18230 64546898 ~ 64547693 (-)
G734892 NA non-coding upstream 41484 64570152 ~ 64570636 (-)
G734893 NA non-coding upstream 42163 64570831 ~ 64571111 (-)
G734917 NA non-coding upstream 72932 64601600 ~ 64601960 (-)
LOC110530961 dhx9 other downstream 2326376 62165849 ~ 62185180 (-)
G731764 NA other downstream 2463437 62045035 ~ 62048119 (-)
LOC110530228 LOC106569007 other downstream 6647679 57858233 ~ 57864165 (-)
G726900 NA other downstream 6664867 57820047 ~ 57846689 (-)
G726885 NA other downstream 6700134 57805388 ~ 57811422 (-)
G735880 NA other upstream 461633 64990301 ~ 65040241 (-)
G736216 NA other upstream 989499 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 1572428 66101096 ~ 66101627 (-)
LOC110530385 LOC106569212 other upstream 1664986 66192359 ~ 66210028 (-)
G737449 LOC106569204 other upstream 2030528 66559196 ~ 66560517 (-)

Expression


Co-expression Network