LOC110530333


Basic Information

Item Value
gene id LOC110530333
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64539032 ~ 64544585 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474507.2
aaagttcaagggggccgaatactttcgcaaggcactgtaagcatTGGCAATAGTCATTGACTAGTCAAGCAGCGCCGATGGAGAGCCGACTCCCTGTCGTGACCCAGGGGAGTCAGAGTTTGGAGGAGGGCTGAAGTGAAGTCAGGCGGGCACTAGTGAAGTGATCGATCTGATTGGACAGACTTTTGTCAGTGGTAGCTGACCAGTGTGATTATGGCCAATAGCAAGCAGACCATGTCAGTGGAAATGATGATAAACCTGGGTGATGGTGGTAATCGCAAAAGAGCTGCCTCCTCAAACACTAAGCCCACTGAGTCAAGAGAGAACAGTGGCGCGCACCACTGcctgactctccctctcctctgggaTTTTCCATCCTGTCCGTGACTGATCCCATACAACACGACACTGCCCTCATTTATATGGCATAGTATATCTGTTTTTATCTGGCTTTGTAGCAATGTTTTATACCACATGCCAACTTCCTTTTCCCTGTTTTTATCCTTTTGATCAGAAAACATGAATGTAGAATGTAATGTTGAAGGGATAAATGAATGTACACCTTTCTTCCCTCCAGACACAGGATGGGTGTTCCCGGAAAAATAACAATGGATCAAGTGAGAGAAGAGCATCTAATAGTGAAGGTGATGAAACGTCACATAGAAGAATTGCAAAAGTAAAGTGGAGGTTTGAGAGTGTGCTGAAGTTTAAGCCCCAGGCACCACCAGGGTGGGAAGGCTGGGAGGAATAGGAAGCGACGTGGCGGTAGGAGAGCATCCTGCCACATCAACCAGCACACCTTCTTTACTGAAGAGGGAGATATCACAGAGCCCAAGCTGAGCAAGACCTTTCAAAAAATCACATGTCCTGATCTGTCTTCAGGTTCAGAGGTTCCTCCAGAAAGTTCAGAGAGGAATACCCCTCTGGAGTTGGATAGTACTGAGCAACCCTCTCATCAGAACCTCTTCACCAGAATAGAAGATGAAGAGGATGATGAGATTCAATTCAGAAGAGAGGTGTACTCACTGGACATACCAGACTACTTAGTTCCCGGAGCACCTGAACACAATAACACAGAGGCTACTGGGAAGGAAAAGAAGAACAATAATACCAAG
>XR_002474508.2
aaagttcaagggggccgaatactttcgcaaggcactgtaagcatTGGCAATAGTCATTGACTAGTCAAGCAGCGCCGATGGAGAGCCGACTCCCTGTCGTGACCCAGGGGAGTCAGAGTTTGGAGGAGGGCTGAAGTGAAGTCAGGCGGGCACTAGTGAAGTGATCGATCTGATTGGACAGACTTTTGTCAGTGGTAGCTGACCAGTGTGATTATGGCCAATAGCAAGCAGACCATGTCAGTGGAAATGATGATAAACCTGGGTGATGGTGGTAATCGCAAAAGAGCTGCCTCCTCAAACACTAAGCCCACTGAGTCAAGAGACACAGGATGGGTGTTCCCGGAAAAATAACAATGGATCAAGTGAGAGAAGAGCATCTAATAGTGAAGGTGATGAAACGTCACATAGAAGAATTGCAAAAGTAAAGTGGAGGTTTGAGAGTGTGCTGAAGTTTAAGCCCCAGGCACCACCAGGGTGGGAAGGCTGGGAGGAATAGGAAGCGACGTGGCGGTAGGAGAGCATCCTGCCACATCAACCAGCACACCTTCTTTACTGAAGAGGGAGATATCACAGAGCCCAAGCTGAGCAAGACCTTTCAAAAAATCACATGTCCTGATCTGTCTTCAGGTTCAGAGGTTCCTCCAGAAAGTTCAGAGAGGAATACCCCTCTGGAGTTGGATAGTACTGAGCAACCCTCTCATCAGAACCTCTTCACCAGAATAGAAGATGAAGAGGATGATGAGATTCAATTCAGAAGAGAGGTGTACTCACTGGACATACCAGACTACTTAGTTCCCGGAGCACCTGAACACAATAACACAGAGGCTACTGGGAAGGAAAAGAAGAACAATAATACCAAG

Function

NR:

description
trimethylguanosine synthase-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474507.2 False 1115 mRNA 0.47 5 64539032 64544585
XR_002474508.2 True 860 mRNA 0.48 5 64539032 64544585

Neighbor

gene id symbol gene type direction distance location
LOC118965543 NA coding downstream 64 64532271 ~ 64538968 (-)
LOC110530332 LOC106569254 coding downstream 10364 64511556 ~ 64528668 (-)
LOC110530331 LOC106569255 coding downstream 27806 64505917 ~ 64511226 (-)
LOC110530326 toe1 coding downstream 197959 64336685 ~ 64341073 (-)
tmem53 LOC106569260 coding downstream 237105 64300231 ~ 64301927 (-)
LOC110530335 LOC106569249 coding upstream 12712 64557297 ~ 64620048 (-)
LOC110530336 LOC106569248 coding upstream 86360 64630945 ~ 64640936 (-)
LOC110530340 LOC106569246 coding upstream 113260 64657845 ~ 64665706 (-)
LOC110530341 LOC106569246 coding upstream 124885 64669470 ~ 64685654 (-)
c8h5orf22 cssa14h5orf22 coding upstream 166882 64711467 ~ 64719874 (-)
G734833 NA non-coding downstream 35753 64502361 ~ 64503279 (-)
G734886 NA non-coding downstream 38079 64498293 ~ 64500953 (-)
G734574 NA non-coding downstream 178267 64360322 ~ 64360765 (-)
G734564 LOC106569295 non-coding downstream 185607 64352841 ~ 64353425 (-)
G734523 NA non-coding downstream 188540 64286169 ~ 64350492 (-)
G734830 NA non-coding upstream 1860 64546445 ~ 64549891 (-)
G734828 NA non-coding upstream 2313 64546898 ~ 64547693 (-)
G734892 NA non-coding upstream 25567 64570152 ~ 64570636 (-)
G734893 NA non-coding upstream 26246 64570831 ~ 64571111 (-)
G734917 NA non-coding upstream 57015 64601600 ~ 64601960 (-)
LOC110530961 dhx9 other downstream 2353852 62165849 ~ 62185180 (-)
G731764 NA other downstream 2490913 62045035 ~ 62048119 (-)
LOC110530228 LOC106569007 other downstream 6675155 57858233 ~ 57864165 (-)
G726900 NA other downstream 6692343 57820047 ~ 57846689 (-)
G726885 NA other downstream 6727610 57805388 ~ 57811422 (-)
G735880 NA other upstream 445716 64990301 ~ 65040241 (-)
G736216 NA other upstream 973582 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 1556511 66101096 ~ 66101627 (-)
LOC110530385 LOC106569212 other upstream 1649069 66192359 ~ 66210028 (-)
G737449 LOC106569204 other upstream 2014611 66559196 ~ 66560517 (-)

Expression


Co-expression Network