LOC110530340 (LOC106569246)


Basic Information

Item Value
gene id LOC110530340
gene name LOC106569246
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64657845 ~ 64665706 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613313.2
CATAATGCGCCCACCACCACGCCTAGTTCCTCCAGGGGGTTATATATTCCACAAAACCATTCCAGGTGCATCTCATGGAGGGGCAGCAGTGGAACAGTGAAACACTGGACAAACTTCACTCCCAGAACTCAATCACATTATGGATTACTTGCAGCTACCAGAAAACATAATTGAACATGCTAAACCAGGTGGGCAGGTTTTGGCAGAGAGTAAGCAGCACAGAAGCTCCTCTGACATCAACCCTCCACAGACAGCGAGTGATAACACCTGCAGCATAACCAAGGACTTCAGTTGCATCTACAgcaaagATCTACTCCCTGCTCTCAGTGGTGAGGACACAACCAAAAGTTTCTTCCAAGAGCTGGTGAACATTCTCCTCAGCTATGTCTGCAAGTCGTTCAGACGGAGCTCCAAAGTCCTGGACTTCCACCACCCTCACCAACTCAGAGAGGGCCTGGAGGGCTTCAGTCTGGAGCTCCCAGACCAGCCCGAGAACCTGGAACAACTCCTGGTCGACTGCAGGGACACCTTGAAGTATGGAGTCAAAACAGGTCACCCACGCTTCTTCAATCAGCTGTCATCAGGTCTGGATGTCATCGGTTTGGCCGGGGAATGGCTGACATCTACTGCCAACACAAACATGTTTACTTATGAAGTGTCCCCAGTGTTCATTCTGATGGAGGAGATTCTACTGAAGAAGATGCAGGAGATTGTGGGTTGgtcagaggaagagggggatggtGTTTTCTGTCCAGGTGGGACCATGTCCAATCTGTACAGTGTACTACTGGCCAGATACCACTTCTTCCCTGAAGTGAAGACCAAAGGGATGACTGCTCTGCCCAGGCTAATCCTCTTCACATCAGCACATAGTCATTATTCAGTCAAGAAATCTGCAGCAGTCCTTGGGATAGGAAGTGAAAATGTTGTGGTGGTGAAATGTAATGACTGGGGGAAAATGATCCCTGCAGAATTGGAGTCAAGTATCATTACTGCCAAAGATCAGggtTGTGTCCCATTCTACGTCAATGCCACAGCAGGCACCACTGTGTACGGAGCCTTTGATCCTCTCAATGCCATCGCAGACATCTGTGAGAGCCATGGACTCTGGCTGCATGTTGATGCAGCCTGGGGTGGAGGACTGTTGATGTCCAACCTGCACCGTGTGAAACTACAAGGGATTGAACGAGCCTGGTCTGTGACTTGGAACCCTCATAAAATGATGGGTGCTCCGCTGCAATGCTCAGCCATACTGGTGAAGAAAAGGGGCCTCTTGAAAGACTGCAATCAGATGTGTGCTGAATACCTTTTCCAAACTGACAAGCACTACGACACCTCTTATGACACCGGAGACAAGACCATTCAGTGTGGCAGGCATGTTGATGTCTTCAAGCTCTGGCTCATGTGGAAGGCCAAGGGTTCAGAAGGCTTCGAATCACAGGTCAATAAATGTTTGgaaaatgctgagcacttgtttgacAAACTCAAACAAAGACCAGACTTTGAACTTGTCTTCAAAAGCAAACCTGAACACAGCAACGTGTGCTTCTGGTACATCCCACCAAGTCTGAGGAACATGTCCCCAGGTCCTGAGAGGAACAGGAGACTCCATGAGGTGGCACCAAAGATCAAAGCCAAGATGATGGAGCAGGGGATGGCCATGATTGGCTATCAGCCACTCGGAGACAAAGTGAACTTCTTCCGATGTGTCTTCTCCAACCCGGCCACACAGACAGAGGATGTGGACTACCTGTTGGAGGAGATCGCTTCTCTTGGTCATGACATCTGCATCAGGGCTGAAACCGATTTATGAATCGGGTTGGGTGAATAAGGATTTAGACCACTTTATGAATCAGATTGTGGCTCAGATCAACTTTAAAACATGCGTTTAGAATTATTCTCAAATGTTTTATTGCGTaaatattcattttttttaaatattcaaaTTTTGTATTTCAGATTATCAGGTAGTCAGTTAATTTCTACATGCATTTTGTGTACAACAATATTGTatctaacaggacaatgaacattgtttaattttttaaatataatttctcAAGTTTGACATTTTAAAATATCAATGTTAAGTAGGCAACAGTTGATGCTGTAATTGTATTAACCGATGGGTTGTTAGTGTTTATCATATTGTCATCGTGTGTGGTCtaaaatgttacattttactAAAATGTCCAACATCATCTGTAGGTGAAGACAGATTTGAACAAATACAATCACAAAGCTCTAAAA
>XM_021613314.2
ATAGCCTTGTGTCATAATGCGCCCACCACCACGCCTAGTTCCTCCAGGGGGTTATATATTCCACAAAACCATTCCAGGTGCATCTCATGGAGGGGCAGCAGTGGAACAGTGAAACACTGGACAAACTTCACTCCCAGAACTCAATCACATTATGGATTACTTGCAGCTACCAGGTGGGCAGGTTTTGGCAGAGAGTAAGCAGCACAGAAGCTCCTCTGACATCAACCCTCCACAGACAGCGAGTGATAACACCTGCAGCATAACCAAGGACTTCAGTTGCATCTACAgcaaagATCTACTCCCTGCTCTCAGTGGTGAGGACACAACCAAAAGTTTCTTCCAAGAGCTGGTGAACATTCTCCTCAGCTATGTCTGCAAGTCGTTCAGACGGAGCTCCAAAGTCCTGGACTTCCACCACCCTCACCAACTCAGAGAGGGCCTGGAGGGCTTCAGTCTGGAGCTCCCAGACCAGCCCGAGAACCTGGAACAACTCCTGGTCGACTGCAGGGACACCTTGAAGTATGGAGTCAAAACAGGTCACCCACGCTTCTTCAATCAGCTGTCATCAGGTCTGGATGTCATCGGTTTGGCCGGGGAATGGCTGACATCTACTGCCAACACAAACATGTTTACTTATGAAGTGTCCCCAGTGTTCATTCTGATGGAGGAGATTCTACTGAAGAAGATGCAGGAGATTGTGGGTTGgtcagaggaagagggggatggtGTTTTCTGTCCAGGTGGGACCATGTCCAATCTGTACAGTGTACTACTGGCCAGATACCACTTCTTCCCTGAAGTGAAGACCAAAGGGATGACTGCTCTGCCCAGGCTAATCCTCTTCACATCAGCACATAGTCATTATTCAGTCAAGAAATCTGCAGCAGTCCTTGGGATAGGAAGTGAAAATGTTGTGGTGGTGAAATGTAATGACTGGGGGAAAATGATCCCTGCAGAATTGGAGTCAAGTATCATTACTGCCAAAGATCAGggtTGTGTCCCATTCTACGTCAATGCCACAGCAGGCACCACTGTGTACGGAGCCTTTGATCCTCTCAATGCCATCGCAGACATCTGTGAGAGCCATGGACTCTGGCTGCATGTTGATGCAGCCTGGGGTGGAGGACTGTTGATGTCCAACCTGCACCGTGTGAAACTACAAGGGATTGAACGAGCCTGGTCTGTGACTTGGAACCCTCATAAAATGATGGGTGCTCCGCTGCAATGCTCAGCCATACTGGTGAAGAAAAGGGGCCTCTTGAAAGACTGCAATCAGATGTGTGCTGAATACCTTTTCCAAACTGACAAGCACTACGACACCTCTTATGACACCGGAGACAAGACCATTCAGTGTGGCAGGCATGTTGATGTCTTCAAGCTCTGGCTCATGTGGAAGGCCAAGGGTTCAGAAGGCTTCGAATCACAGGTCAATAAATGTTTGgaaaatgctgagcacttgtttgacAAACTCAAACAAAGACCAGACTTTGAACTTGTCTTCAAAAGCAAACCTGAACACAGCAACGTGTGCTTCTGGTACATCCCACCAAGTCTGAGGAACATGTCCCCAGGTCCTGAGAGGAACAGGAGACTCCATGAGGTGGCACCAAAGATCAAAGCCAAGATGATGGAGCAGGGGATGGCCATGATTGGCTATCAGCCACTCGGAGACAAAGTGAACTTCTTCCGATGTGTCTTCTCCAACCCGGCCACACAGACAGAGGATGTGGACTACCTGTTGGAGGAGATCGCTTCTCTTGGTCATGACATCTGCATCAGGGCTGAAACCGATTTATGAATCGGGTTGGGTGAATAAGGATTTAGACCACTTTATGAATCAGATTGTGGCTCAGATCAACTTTAAAACATGCGTTTAGAATTATTCTCAAATGTTTTATTGCGTaaatattcattttttttaaatattcaaaTTTTGTATTTCAGATTATCAGGTAGTCAGTTAATTTCTACATGCATTTTGTGTACAACAATATTGTatctaacaggacaatgaacattgtttaattttttaaatataatttctcAAGTTTGACATTTTAAAATATCAATGTTAAGTAGGCAACAGTTGATGCTGTAATTGTATTAACCGATGGGTTGTTAGTGTTTATCATATTGTCATCGTGTGTGGTCtaaaatgttacattttactAAAATGTCCAACATCATCTGTAGGTGAAGACAGATTTGAACAAATACAATCACAAAGCTCTAAAA
>XM_036985970.1
TTTTTGGAATAGCATTGTTTCATTCAGGTTGAATAGCCTTGTGTCATAATGCGCCCACCACCACGCCTAGTTCCTCCAGGGGGTTATATATTCCACAAAACCATTCCAGGTGCATCTCATGGAGGGGCAGCAGTGGAACAGTGAAACACTGGACAAACTTCACTCCCAGAACTCAATCACATTATGGATTACTTGCAGCTACCAGATCTACTCCCTGCTCTCAGTGGTGAGGACACAACCAAAAGTTTCTTCCAAGAGCTGGTGAACATTCTCCTCAGCTATGTCTGCAAGTCGTTCAGACGGAGCTCCAAAGTCCTGGACTTCCACCACCCTCACCAACTCAGAGAGGGCCTGGAGGGCTTCAGTCTGGAGCTCCCAGACCAGCCCGAGAACCTGGAACAACTCCTGGTCGACTGCAGGGACACCTTGAAGTATGGAGTCAAAACAGGTCACCCACGCTTCTTCAATCAGCTGTCATCAGGTCTGGATGTCATCGGTTTGGCCGGGGAATGGCTGACATCTACTGCCAACACAAACATGTTTACTTATGAAGTGTCCCCAGTGTTCATTCTGATGGAGGAGATTCTACTGAAGAAGATGCAGGAGATTGTGGGTTGgtcagaggaagagggggatggtGTTTTCTGTCCAGGTGGGACCATGTCCAATCTGTACAGTGTACTACTGGCCAGATACCACTTCTTCCCTGAAGTGAAGACCAAAGGGATGACTGCTCTGCCCAGGCTAATCCTCTTCACATCAGCACATAGTCATTATTCAGTCAAGAAATCTGCAGCAGTCCTTGGGATAGGAAGTGAAAATGTTGTGGTGGTGAAATGTAATGACTGGGGGAAAATGATCCCTGCAGAATTGGAGTCAAGTATCATTACTGCCAAAGATCAGggtTGTGTCCCATTCTACGTCAATGCCACAGCAGGCACCACTGTGTACGGAGCCTTTGATCCTCTCAATGCCATCGCAGACATCTGTGAGAGCCATGGACTCTGGCTGCATGTTGATGCAGCCTGGGGTGGAGGACTGTTGATGTCCAACCTGCACCGTGTGAAACTACAAGGGATTGAACGAGCCTGGTCTGTGACTTGGAACCCTCATAAAATGATGGGTGCTCCGCTGCAATGCTCAGCCATACTGGTGAAGAAAAGGGGCCTCTTGAAAGACTGCAATCAGATGTGTGCTGAATACCTTTTCCAAACTGACAAGCACTACGACACCTCTTATGACACCGGAGACAAGACCATTCAGTGTGGCAGGCATGTTGATGTCTTCAAGCTCTGGCTCATGTGGAAGGCCAAGGGTTCAGAAGGCTTCGAATCACAGGTCAATAAATGTTTGgaaaatgctgagcacttgtttgacAAACTCAAACAAAGACCAGACTTTGAACTTGTCTTCAAAAGCAAACCTGAACACAGCAACGTGTGCTTCTGGTACATCCCACCAAGTCTGAGGAACATGTCCCCAGGTCCTGAGAGGAACAGGAGACTCCATGAGGTGGCACCAAAGATCAAAGCCAAGATGATGGAGCAGGGGATGGCCATGATTGGCTATCAGCCACTCGGAGACAAAGTGAACTTCTTCCGATGTGTCTTCTCCAACCCGGCCACACAGACAGAGGATGTGGACTACCTGTTGGAGGAGATCGCTTCTCTTGGTCATGACATCTGCATCAGGGCTGAAACCGATTTATGAATCGGGTTGGGTGAATAAGGATTTAGACCACTTTATGAATCAGATTGTGGCTCAGATCAACTTTAAAACATGCGTTTAGAATTATTCTCAAATGTTTTATTGCGTaaatattcattttttttaaatattcaaaTTTTGTATTTCAGATTATCAGGTAGTCAGTTAATTTCTACATGCATTTTGTGTACAACAATATTGTatctaacaggacaatgaacattgtttaattttttaaatataatttctcAAGTTTGACATTTTAAAATATCAATGTTAAGTAGGCAACAGTTGATGCTGTAATTGTATTAACCGATGGGTTGTTAGTGTTTATCATATTGTCATCGTGTGTGGTCtaaaatgttacattttactAAAATGTCCAACATCATCTGTAGGTGAAGACAGATTTGAACAAATACAATCACAAAGCTCTAAAA

Function

NR:

description
glutamate decarboxylase 1-like isoform X3

GO: NA

KEGG:

id description
K01580 E4.1.1.15, gadB, gadA, GAD; glutamate decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613313.2 False 2250 mRNA 0.45 15 64657845 64665662
XM_021613314.2 False 2235 mRNA 0.46 15 64657845 64665674
XM_036985970.1 True 2147 mRNA 0.45 14 64657845 64665706

Neighbor

gene id symbol gene type direction distance location
LOC110530336 LOC106569248 coding downstream 16909 64630945 ~ 64640936 (-)
LOC110530335 LOC106569249 coding downstream 37797 64557297 ~ 64620048 (-)
LOC110530333 NA coding downstream 113260 64539032 ~ 64544585 (-)
LOC118965543 NA coding downstream 118877 64532271 ~ 64538968 (-)
LOC110530332 LOC106569254 coding downstream 129177 64511556 ~ 64528668 (-)
LOC110530341 LOC106569246 coding upstream 3764 64669470 ~ 64685654 (-)
c8h5orf22 cssa14h5orf22 coding upstream 45761 64711467 ~ 64719874 (-)
cdh6 LOC106569244 coding upstream 92694 64758400 ~ 64794173 (-)
cahz LOC100135827 coding upstream 464268 65129974 ~ 65135673 (-)
c8h10orf67 cssa14h10orf67 coding upstream 604290 65269996 ~ 65290810 (-)
G734936 NA non-coding downstream 32545 64624877 ~ 64625300 (-)
G734933 NA non-coding downstream 35999 64621551 ~ 64621846 (-)
G734932 NA non-coding downstream 38935 64618686 ~ 64618910 (-)
G734930 NA non-coding downstream 42285 64615360 ~ 64615560 (-)
G734920 NA non-coding downstream 51902 64605546 ~ 64605943 (-)
G735049 NA non-coding upstream 156598 64822304 ~ 64822678 (-)
G735081 NA non-coding upstream 176784 64842490 ~ 64842697 (-)
G735166 NA non-coding upstream 225098 64890804 ~ 64891051 (-)
G735192 NA non-coding upstream 242412 64908118 ~ 64908398 (-)
G735830 NA non-coding upstream 269330 64935036 ~ 64935267 (-)
LOC110530961 dhx9 other downstream 2472665 62165849 ~ 62185180 (-)
G731764 NA other downstream 2609726 62045035 ~ 62048119 (-)
LOC110530228 LOC106569007 other downstream 6793968 57858233 ~ 57864165 (-)
G726900 NA other downstream 6811156 57820047 ~ 57846689 (-)
G726885 NA other downstream 6846423 57805388 ~ 57811422 (-)
G735880 NA other upstream 324595 64990301 ~ 65040241 (-)
G736216 NA other upstream 852461 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 1435390 66101096 ~ 66101627 (-)
LOC110530385 LOC106569212 other upstream 1527948 66192359 ~ 66210028 (-)
G737449 LOC106569204 other upstream 1893490 66559196 ~ 66560517 (-)

Expression


Co-expression Network