LOC110530341 (LOC106569246)


Basic Information

Item Value
gene id LOC110530341
gene name LOC106569246
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64669470 ~ 64685654 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613315.2
ATGGATTACTTGCAGCTGCCAGAAAGCATCACAGAAAAATCTACACCTGGTGGGCAGATTTTGGCAGAGAGTAAACAGAGAAGCTCCTCTGACAATATCAACTCTCCACAGACAAGTGACAACACCTGCATACCCAAGGACTTCAGCTGCATATACAACAAAGATCTACTCCCTGCTCTCAGTGGTGAGGACACAACCAAAAGTTTCTTCCAAGAGCTGGTGAACATTCTCCTCAGCTATGTCTGCAAGTCGTTCAGACGGAGCTCCAAAGTCCTGGACTTCCACCACCCTCACCAACTCAGAGAGGGCCTGGAGGGCTTCAGTCTGGAGCTCCCAGACCAGCCCGAGAACCTGGAACAACTCCTGGTCGACTGCAGGGACACCTTGAAGTATGGAGTCAAAACAGGTCACCCACGCTTCTTCAATCAGCTGTCATCAGGGCTGGATGTCATCGGTCTGGCCGGGGAATGGCTGACGTCTACCGCCAACACAAACATGTTTACATATGAAGTGTCCCCAGTGTTCATTCTGATGGAGGAGATTCTACTGAAGAAGATGCAGGAGATTGTGGGTTGgtcagaggaagagggggatggagtttTCTGTCCAGGTGGGACCATGTCCAATCTGTACAGTGTACTACTGGCCAGATACCACTTCTTCCCTGAAGTGAAGACCAAAGGGATGACTGCTCTGCCCAGGCTAATCCTCTTCACATCAGCACATAGTCATTATTCAGTCAAGAAATCTGCAGCAGTCCTTGGGATAGGAAGTGAAAATGTTGTGGTGGTGAAATGTAATGACTGGGGAAAAATGATCCCTGCAGAATTGGAGTCAAGTATCCTTACTGCCAAAGATCAGggtTGTGTCCCATTCTACGTCAATGCCACAGCAGGCACCACTGTGTACGGAGCCTTTGATCCTCTCAATGCCATCGCAGACATCTGTGAGAGCCATGGACTCTGGCTGCATGTTGATGCAGCCTGGGGCGGAGGACTGTTGATGTCCAAGCGGCACCGCGTGAAACTACAAGGGATTGAACGAGCCTGGTCTGTGACTTGGAACCCTCATAAAATGATGGGTGCTCCGCTGCAATGCTCAGCCATACTGGTGAAGAAAAGGGGCCTCTTGAAAGACTGCAATCAGATGTGTGCTGAATACCTTTTCCAAACTGACAAGCACTACGACACCTCTTATGACACCGGAGACAAGACCATTCAGTGTGGCAGGCATGTTGATGTCTTCAAGCTCTGGCTCATGTGGAAGGCCAAGGGTTCAGAAGGCTTCGAATCACAGGTCAATAAATGTTTGgaaaatgctgagcacttgtttgacAAACTCAAACAAAGACCAGACTTTGAACTCGTCTTCAAAAGCAAACCTGAACACAGCAACGTGTGCTTCTGGTACATCCCACCAAGTCTGAGGAACATGTCACCAGGTCCTGAGAGGAACAGGAGACTCCATGAGGTGGCACCAAAGATCAAAGCCAAGATGATGGAGCAGGGGATGGCCATGATTGGCTATCAGCCGCTCGGAGACAAAGTGAACTTCTTCCGATGTGTCTTCTCCAACCCGGCCACACAGACAGAGGATGTGGACTACCTGTTGGAGGAGATCGCTTCTCTTGGTCATGACATCTGCATAAGGGCTGAAACCGATTTGTGAATCAGATTGTGGCTCAGATGAACTGTAAATCATGCATTTAGAGGGAAATGGGTAAAAACAATCAGAAAACTAAATATATCTCTAAATGTTTTGTTGTGTAATTACAGTCCTTCTtatgtaaaaatatatacaaatatgaTTTTTGTATTCCAGAGTATCAGGGAATTGTTAGAATGTAGCCAGTTCATTTCTACATTCATTTTATTTGTGTACAACAATATTGTAGCCtatagagtgcattcggaaagtattcagaccccttgacttttttcacattttgttacgttacagccttattctaaaactgattaaataattgttttccaca

Function

NR:

description
glutamate decarboxylase 1-like isoform X3

GO: NA

KEGG:

id description
K01580 E4.1.1.15, gadB, gadA, GAD; glutamate decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613315.2 True 1996 mRNA 0.46 15 64669470 64685654

Neighbor

gene id symbol gene type direction distance location
LOC110530340 LOC106569246 coding downstream 3764 64657845 ~ 64665706 (-)
LOC110530336 LOC106569248 coding downstream 28534 64630945 ~ 64640936 (-)
LOC110530335 LOC106569249 coding downstream 49422 64557297 ~ 64620048 (-)
LOC110530333 NA coding downstream 124885 64539032 ~ 64544585 (-)
LOC118965543 NA coding downstream 130502 64532271 ~ 64538968 (-)
c8h5orf22 cssa14h5orf22 coding upstream 25813 64711467 ~ 64719874 (-)
cdh6 LOC106569244 coding upstream 72746 64758400 ~ 64794173 (-)
cahz LOC100135827 coding upstream 444320 65129974 ~ 65135673 (-)
c8h10orf67 cssa14h10orf67 coding upstream 584342 65269996 ~ 65290810 (-)
paxip1 LOC106569237 coding upstream 703894 65389548 ~ 65408613 (-)
G734936 NA non-coding downstream 44170 64624877 ~ 64625300 (-)
G734933 NA non-coding downstream 47624 64621551 ~ 64621846 (-)
G734932 NA non-coding downstream 50560 64618686 ~ 64618910 (-)
G734930 NA non-coding downstream 53910 64615360 ~ 64615560 (-)
G734920 NA non-coding downstream 63527 64605546 ~ 64605943 (-)
G735049 NA non-coding upstream 136650 64822304 ~ 64822678 (-)
G735081 NA non-coding upstream 156836 64842490 ~ 64842697 (-)
G735166 NA non-coding upstream 205150 64890804 ~ 64891051 (-)
G735192 NA non-coding upstream 222464 64908118 ~ 64908398 (-)
G735830 NA non-coding upstream 249382 64935036 ~ 64935267 (-)
LOC110530961 dhx9 other downstream 2484290 62165849 ~ 62185180 (-)
G731764 NA other downstream 2621351 62045035 ~ 62048119 (-)
LOC110530228 LOC106569007 other downstream 6805593 57858233 ~ 57864165 (-)
G726900 NA other downstream 6822781 57820047 ~ 57846689 (-)
G726885 NA other downstream 6858048 57805388 ~ 57811422 (-)
G735880 NA other upstream 304647 64990301 ~ 65040241 (-)
G736216 NA other upstream 832513 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 1415442 66101096 ~ 66101627 (-)
LOC110530385 LOC106569212 other upstream 1508000 66192359 ~ 66210028 (-)
G737449 LOC106569204 other upstream 1873542 66559196 ~ 66560517 (-)

Expression


Co-expression Network