cahz (LOC100135827)


Basic Information

Item Value
gene id cahz
gene name LOC100135827
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65129974 ~ 65135673 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036984497.1
AGGCCAAACCCACCCACTtgatgtaggcctactgtcagGAGGGGAAGTCTATATAAACCCTCGCAATTGTTATTTCAAGGTTAGCACAAACTGGATCCTTGTATCTTGGTTTTACAATTGAAAGGGATTATATTGCATAGGAACACAAGTCAATAATCATGTCTCACAGCTGGGGATATGGACCATCTGATGGACCTGAGAAGTGGTGTGATGGCTTTCCTGTTGCTAATGGACCCAGGCAGTCTCCTATTGATATTATTCCTGGTCAAACCTCCTATGATTCTACCTTGAAGCCCCTCAAACTGAAATATGACCCATCCAACTCCACAGACATTCTGAACAATGGCCATTCCTTCCAAGTTGGCTTTGTGGATGATGTTGACAGTTCAACACTGACCGGAGGCCCCATCACTGGCATATACAGGCTGAAGCAGTTCCACTTCCACTGGGGCGCCAGTGACGACAGGGGCTCTGAGCACACCGTCAATGGAATCAAGTTCCCCTGTGAGCTCCATCTGGTGCACTGGAACACCAAGTACCCTAGCTTTGGTGAGGCCGCTAGTGAACCCGATGGACTCGCTGTGGTTGGAGTGTTTCTGAAGATTGGTGCTGCAAACCCCAGACTGCAGAAGGTTCTCGATGCTCTGGGGGCCATCAAATCAAAGGGAAAGCAAACTACATTTTCCAACTTTGATGCCAAAACTCTGTTGCCTTGCTCACTGGACTACTGGACATATGATGGCTCCCTGACCACTCCCCCTCTGCTGGAGAGTGTCACCTGGATCGTCCTGAAGGAACCGATCAGTGTCAGCCCTACCCAGGACAATGCGAGACCCACATGGTTTACAACGAGGCTCAGGTGAATTACTGACCAGAGAGatgGGTAAATTCCGCAGCTTAATGTTCAGTGGTGATGGAGAGGCACCTTGCTGCATGCAGGACAACTACCGGCCCCCTCAGCCTCTCAAGGGACGCAAGGTCCGCCGGTCCTTCAAGTAAACAGCTATGCATCACGCCATCCCCCATCCCACCATTGCCGATCCCCAACCTTTCCcctagattatatatatattgtgtgccATTTTATATGCATTGCGATCAGAATCTGCAGATTGTTAACCCTATAGACAATACAATCAGTAATCAGAAAACAGAAAggaaacctaaacctaaaccaaTGCAGTTTAATAACAAGAGCCAGTGTAGATGAGATTATTGTGCCGATATGGATGGACAGCACTTTATACGcctggcctgcctgcccctcctgtaatccctgaCGATAAACCTCAGGATCACCCCAGATTAACGTCATTTAGCTGCCTGTCACTGCAATAAGAGACGACTGACTCAGTCAGTCAGCCCGTCAGAGATAGAGGCCTTTTATAGTATAATACTACTGGGCTTCTACTCTCAATAAGCACAAGGAGAGATGGAATCTTGAATTACATGCCTTCAATTTTTGGATTGTGTCTCTAAATCGTCATCAGTGTTTTTACTTTAGATTACAGGTCAATACTGAAAAGAAGAGATCCAATTCAAGTGATTATTTTTTTAACGACTCATAACTTACTACCTACCCCAGTGCATTAACATTGTGTCTTAAAATCATGAGAGTGAAAGAAGATGTTGTGTGAGATGTCATATCATCCAAGTCCATCCATTGAAAGAAATCACTGACTGAGGGACTAGAGTAATGTGTGTTTTAGttttatttaaataaatgttatattgaAAAATGTAATCTTGAagtatgttttaaatgtttttggaaatacctggaatgatttttaagccttgcgTATAATTAATGTTAAAATGGGAATGGAAGGTTTGTGTGATTCGTTCATGTCAAATTTGATGGATGGGAATTTGATCAGTGAAATAAATGGCATAACTGTACC
>NM_001124221.1
TCTTGGTTTTACAATTGAAAGGGATTATATTGCATAGGAACACAAGTCAATAATCATGTCTCACAGCTGGGGATATGGACCATCTGATGGACCTGAGAAGTGGTGTGATGGCTTTCCTGTTGCTAATGGACCCAGGCAGTCTCCTATTGATATTATTCCTGGTCAAACCTCCTATGATTCTACCTTGAAGCCCCTCAAACTGAAATATGACCCATCCAACTCCACAGACATTCTGAACAATGGCCATTCCTTCCAAGTTGGCTTTGTGGATGATGTTGACAGTTCAACACTGACCGGAGGCCCCATCACTGGCATATACAGGCTGAAGCAGTTCCACTTCCACTGGGGCGCCAGTGACGACAGGGGCTCTGAGCACACCGTCAATGGAATCAAGTTCCCCTGTGAGCTCCATCTGGTGCACTGGAACACCAAGTACCCTAGCTTTGGTGAGGCCGCTAGTGAACCCGATGGACTCGCTGTGGTTGGAGTGTTTCTGAAGATTGGTGCTGCAAACCCCAGACTGCAGAAGGTTCTCGATGCTCTGGGGGCCATCAAATCAAAGGGAAAGCAAACTACATTTTCCAACTTTGATGCCAAAACTCTGTTGCCTTGCTCACTGGACTACTGGACATATGATGGCTCCCTGACCACTCCCCCTCTGCTGGAGAGTGTCACCTGGATCGTCCTGAAGGAACCGATCAGTGTCAGCCCTACCCAGatgGGTAAATTCCGCAGCTTAATGTTCAGTGGTGATGGAGAGGCACCTTGCTGCATGCAGGACAACTACCGGCCCCCTCAGCCTCTCAAGGGACGCAAGGTCCGCCGGTCCTTCAAGTAAACAGCTATGCATCACGCCATCCCCCATCCCACCATTGCCGATCCCCAACCTTTCCcctagattatatatatattgtgtgccATTTTATATGCATTGCGATCAGAATCTGCAGATTGTTAACCCTATAGACAATACAATCAGTAATCAGAAAACAGAAAggaaacctaaacctaaaccaaTGCAGTTTAATAACAAGAGCCAGTGTAGATGAGATTATTGTGCCGATATGGATGGACAGCACTTTATACGcctggcctgcctgcccctcctgtaatccctgaCGATAAACCTCAGGATCACCCCAGATTAACGTCATTTAGCTGCCTGTCACTGCAATAAGAGACGACTGACTCAGTCAGTCAGCCCGTCAGAGATAGAGGCCTTTTATAGTATAATACTACTGGGCTTCTACTCTCAATAAGCACAAGGAGAGATGGAATCTTGAATTACATGCCTTCAATTTTTGGATTGTGTCTCTAAATCGTCATCAGTGTTTTTACTTTAGATTACAGGTCAATACTGAAAAGAAGAGATCCAATTCAAGTGATTATTTTTTTAACGACTCATAACTTACTACCTACCCCAGTGCATTAACATTGTGTCTTAAAATCATGAGAGTGAAAGAAGATGTTGTGTGAGATGTCATATCATCCAAGTCCATCCATTGAAAGAAATCACTGACTGAGGGACTAGAGTAATGTGTGTTTTAGttttatttaaataaatgttatattgaAAAATGTAATCTTGAagtatgttttaaatgtttttggaaatacctggaatgatttttaagccttgcgTATAATTAATGTTAAAATGGGAATGGAAGGTTTGTGTGATTCGTTCATGTCAAATTTGATGGATGGGAATTTGATCAGTGAAATAAATGGCATAACTGT

Function

NR:

description
carbonic anhydrase II

GO:

id name namespace
GO:0042539 hypotonic salinity response biological_process
GO:0006730 one-carbon metabolic process biological_process
GO:0015670 carbon dioxide transport biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004089 carbonate dehydratase activity molecular_function

KEGG:

id description
K01672 CA; carbonic anhydrase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036984497.1 False 1904 mRNA 0.44 8 65129974 65135673
NM_001124221.1 True 1740 mRNA 0.44 7 65129977 65135570

Neighbor

gene id symbol gene type direction distance location
cdh6 LOC106569244 coding downstream 335801 64758400 ~ 64794173 (-)
c8h5orf22 cssa14h5orf22 coding downstream 410100 64711467 ~ 64719874 (-)
LOC110530341 LOC106569246 coding downstream 444320 64669470 ~ 64685654 (-)
LOC110530340 LOC106569246 coding downstream 464268 64657845 ~ 64665706 (-)
LOC110530336 LOC106569248 coding downstream 489038 64630945 ~ 64640936 (-)
c8h10orf67 cssa14h10orf67 coding upstream 134323 65269996 ~ 65290810 (-)
paxip1 LOC106569237 coding upstream 253875 65389548 ~ 65408613 (-)
cnpy1 LOC106569234 coding upstream 290294 65425967 ~ 65447350 (-)
shhb LOC106569233 coding upstream 347987 65483660 ~ 65486476 (-)
LOC110530358 LOC106569231 coding upstream 384577 65520250 ~ 65546632 (-)
G735971 NA non-coding downstream 3812 65122982 ~ 65126162 (-)
G735863 NA non-coding downstream 162849 64966805 ~ 64967125 (-)
G735853 NA non-coding downstream 174557 64955134 ~ 64955417 (-)
G735849 NA non-coding downstream 179000 64950747 ~ 64950974 (-)
G735839 NA non-coding downstream 186947 64942729 ~ 64943027 (-)
G736049 LOC106569241 non-coding upstream 115177 65250850 ~ 65251189 (-)
G736134 NA non-coding upstream 247555 65383228 ~ 65386534 (-)
G736188 NA non-coding upstream 336820 65472493 ~ 65472965 (-)
G736190 NA non-coding upstream 339316 65474989 ~ 65475294 (-)
G735880 NA other downstream 89733 64990301 ~ 65040241 (-)
LOC110530961 dhx9 other downstream 2944794 62165849 ~ 62185180 (-)
G731764 NA other downstream 3081855 62045035 ~ 62048119 (-)
LOC110530228 LOC106569007 other downstream 7266097 57858233 ~ 57864165 (-)
G726900 NA other downstream 7283285 57820047 ~ 57846689 (-)
G736216 NA other upstream 382494 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 965423 66101096 ~ 66101627 (-)
LOC110530385 LOC106569212 other upstream 1057981 66192359 ~ 66210028 (-)
G737449 LOC106569204 other upstream 1423523 66559196 ~ 66560517 (-)
G737422 LOC106569284 other upstream 1578020 66713693 ~ 66714496 (-)

Expression


Co-expression Network