paxip1 (LOC106569237)


Basic Information

Item Value
gene id paxip1
gene name LOC106569237
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65389548 ~ 65408613 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985986.1
ATGTATAACACAATACATCACTATATCTGAGAAACAATACATAAATGAAACAATGTTATTCCGTTCCACCCCCTTTGTCGTCACGCTCTGGTACAGGCGCGCTCAGTGAGATTTGGCGCTAGTGTGTACCTTGAGGGGAATAACTTTTTAATGTCTTTTGACTTTTTAGTGATTTTGTTTTACATATCTTGATTAGCATTTTATGGATAATAATGTCGGATGAAGAACCGAAGGTCCCTGAGGATCTCTTTAAAGATGTTAAATTTTACGTGGTCGGGGACATTGACCAAAAGGTTGTCCAGCTGCTGAAAGCAGGGAAAGGCAAGGAGGTCTCATACAATGCCTTGGCTACACACATTATAGCAGAGGATGGAGATAACCCAGAGGTTGGGGAGTCACGAGAGGTCTTTGACCTTCCAGTTGTCAAGCCGTCTTGGGTGACTTTGTCTGTCAGATGTGGAGACCTGCTACCAGTTACCGGTTTCTCCCCAGAGTCAGGACAAATATTCTTCGGTGTCACGGCATGTCTACCTAAACTACCAGAAGATCTGAACACTCTTTGGGCCTTGATCACTTTTTATGGTGGTGACTGTCAACTCAACCTAAACAAGAAATGTACTCACCTGATTGTTCCAGAGCCAAAAGGGGAAAAGTATGAGGTTGCCCTGAAGCACAGCAGCATCAAAATCGTCACTCCGGAGTGGATCACACACTCCGCATTGGACAAGAGTAGGAAGGACGAGGCTCTGTACCACCCCCGGCTGACCTaccaggaggaggatgaggagagcgAGTACGAGTCGCGCTCTGAGGGCAGCTACAGCCCTCCAGGCCGCAGGCGCCCAGGCCCCAGGTCCCGGAGATCCAGCCCCTCATCAAGAGATGACTCCCCTGCTAGTGGCCGAGGAGGGACCTCGCCCAAAGCCGAGCGACGAGACGAACTCATGTTTGATGACTCGGATGACTCTTCCACGGAGAAGGAGGAGCGGAACCTCAACTGGACCCCAGCGGAGATGACCGGGCCGCCCCTGGGTCCCAAACGCAGACTGCAGCCAGTGAAGGACTCTGGCCTGATCAACCTCTGTGCCAGTGTTCCCCCTGTGCCAGGCAGTGCAGGGCCATCAGAAGCCCGGGCTGCCCTAGTACCCAGTGCTGCCCAGCCGGgggcagagaggacagagggcatGGCAGGCTGGAGCCCAGCGGCCAGGACACTACGGAACATCACCAACAACTCTGACATCCAGCAGACCACAAGGCCCCCCAACGTTGCACACATCCTACAGAGTCTCTCTGCCTCAACGAAGATAttagagcagcagcagcaaacgAACCAGGGCCAGCCCAACGCCCAACCCAACCCGCTCCTGTTCAACCAAGCGAAGCCCCAAGGTCAGCAGCAGCTCACAGCCGAAGCACAGCAGCAGTTACTGCAGCAGCAGTCTCATCAGGTcccccaacaacaacagccacaacaacaacagccacaacaacaacaacaacaacagccacaacAACAACACCCACCTCAGCAGCTGTCACAGCAGCAGCACCCCATGCTGCAGCATCTCCCACCACAGCAACTCATGCAGTTGCAccaccagcaacaacaacaacagcagcagcagccgcaGGTTCCTCAGCCAGGTTTCCCTCCTCAGTTGCCACAACAACAAGCACATCAGTTCATCCAGCAGCAGCCACAGCAACAGCAGATCCACCAACAACAGATCTTCacccagcaacaacaacaaccacaacatgcATTCTCGCAGCAACAACTGCGGCCGCAGCAGCTCCTGCGGCCACcaatgcagcagcagcagcagctgcagcagcagCATGCTTTACAACAGCAGTTACAGCAGTTCCAACAGCACAGGCTCCAGCAACagctgcagcagcaacagcagcagcagcaacagcagcagaacCAGCAGCAACAGCAACTCCATCAACAACACctccaacagcagcagcagcagcatttcCTGCAGCAACAGATGCAGCAGCAGCACATGCAGCAgctccagcaacaacaacagcagcagcagcatctgaAGAGCCAGCAGCAGTCGCTGCAGCAGCATCCAAGCCAGCAGCCACTCCAGCAGCCGCAGCAGCAGCAAGGGTCACTACAGCCTCAGCTCCAGCCGCCTCAAGTGCACCAGCTGTTTGGCCACGAGCCAGGACAGGAGATTCCTGAAGATGGCTTCTTGGTGGGCTGTGTGTTTGCTGTTGCTGACTACCCAGAGCAGATGGCAGACAAGCAGCTCCTTGCCACGTGGAAGAGAATTATCCAGGCCTATGGTGGAATTGTGGACTCCTCTCTTAACAACcgctgcactcacctgctctgtgaAACTCAAGTTAGCAGCATGTATGTCCAGGCCCTACGGGAGGGGAGACGCTGTGTCACTGCCCACTGGCTGAACACAATCCTGAAAAAAAAGAAGATGGTTCCTCCCCACAGAACCCTACACCTCCCCTTCGCCTTCCCACCTGGAGCGAAGCCCTGCTCACAACACATCATCTCTGTGACTGGCTTTGTGGACTCAGACCGTGATGACCTGAAGCTAATGGCCTATCTGGCAGGAGCCAGATACACAGGCTACCTCTGTCGTAGCAACACCGTGCTCATCTGTAAAGAGCCCAGTGGTCTGAAGTATGAGAAGGCCAAGGAGTGGAGGATCCCCTGCGTCAATGCCCAGTGGCTCTGTGACATCCTCCTGGGGAACTTTGAGGCTCTCCGGCAGATCCAGCACAGCAGATACTCCAACTTCAACCTGCAGGAACCACTCATCCCCAACCAGCATCTGGTTCAGAACCTACTGGGTGCTTGGCGGGCTCCTGTGAAGGTTTCACCTGATGCGTTGGCAGCATTGCAGCTGCAACAGAAGCAGAGACAGTCTGAGTCAAACTCCCAGCCTCCAAATAAGAAGCCAAGACTTGAGGAGATTCAATCCCCAACCAAGAAGCTTCCACCAGAGTCCACACCGTACATTTTCTTCACTGGCTTTGAGCCAACACAGGTCCAACAATTCATGAAGAGGCTGCACAACCTTGGAGGGGAGATTGCAGAGAGCGCTCAGAAGTGCACCCATCTTGTGGCCAACAAGGTGACGAGGACGGTGAAGTTTCTCACAGCCATGTCAATCGTCAAGCACATCGTCACCCCTGAGTGGTTAGAAGAGAGCTGGAAGAGCCAGAAGTTTGTCGATGAGCAGAACTACATGCTGAGAGATGCAGAGGCAGAGGTGCTGTTTGGCTTCAGTCTGGAAGAGTCACTGAAGAGGGCCCACACTGCACCACTCTTCAAGggcAAGTATTTCTACATTACCCCTGGGATCTGTCCCAGCCTTATCACTATGAAAGCCATTGTAGAGAGCGCAGGAGGCAAGGTGCTCCCCAAGCAGCCCTCCTTCCGCAAGATAATGGAGCACAAGCAGAACAAGAACCTTGCTGAGATCATCCTGATATCATGTGAGAATGATCTTCATCTCTGTAGAGAGTACTTCTTGAAGAACATTGACACTCACAATGCTGAGTTTATATTGACTGGTGTATTGACACAGAACATGGATTATGAATCATATAAATTCACATGATGGCGACGACAAGAAGGTGAAGATGAGGAGGCAGCAAGGAAGGCTAAAAACAAGTTGCAATGTACAGTCACACTACCCTTGATATTTTGCAAGATTTTGTACACTGTGGATAGATAATCGGTCGTTTTGTAGCTTTTTGTAACAACCGTtaataatacatacatacatctttgttatttttgtggactgaatgtttaaattatggaTTTTAACATGTTTTATTGTATTGTCAAAATGTTCCTGCAATTATTCAACACTTTTGGAATAAAATCAGAACTTTGTTGTCAACATGAA
>XM_036985989.1
ATAAATATGTATAACACAATACATCACTATATCTGAGAAACAATACATAAATGAAACAATGTTATTCCGTTCCACCCCCTTTGTCGTCACGCTCTGGTACAGGCGCGCTCAGTGAGATTTGGCGCTAGTGTGTACCTTGAGGGGAATAACTTTTTAATGTCTTTTGACTTTTTAGTGATTTTGTTTTACATATCTTGATTAGCATTTTATGGATAATAATGTCGGATGAAGAACCGAAGGTCCCTGAGGATCTCTTTAAAGATGTTAAATTTTACGTGGTCGGGGACATTGACCAAAAGGTTGTCCAGCTGCTGAAAGCAGGGAAAGGCAAGGAGGTCTCATACAATGCCTTGGCTACACACATTATAGCAGAGGATGGAGATAACCCAGAGGTTGGGGAGTCACGAGAGGTCTTTGACCTTCCAGTTGTCAAGCCGTCTTGGGTGACTTTGTCTGTCAGATGTGGAGACCTGCTACCAGTTACCGGTTTCTCCCCAGAGTCAGGACAAATATTCTTCGGTGTCACGGCATGTCTACCTAAACTACCAGAAGATCTGAACACTCTTTGGGCCTTGATCACTTTTTATGGTGGTGACTGTCAACTCAACCTAAACAAGAAATGTACTCACCTGATTGTTCCAGAGCCAAAAGGGGAAAAGTATGAGGTTGCCCTGAAGCACAGCAGCATCAAAATCGTCACTCCGGAGTGGATCACACACTCCGCATTGGACAAGAGTAGGAAGGACGAGGCTCTGTACCACCCCCGGCTGACCTaccaggaggaggatgaggagagcgAGTACGAGTCGCGCTCTGAGGGCAGCTACAGCCCTCCAGGCCGCAGGCGCCCAGGCCCCAGGTCCCGGAGATCCAGCCCCTCATCAAGAGATGACTCCCCTGCTAGTGGCCGAGGAGGGACCTCGCCCAAAGCCGAGCGACGAGACGAACTCATGTTTGATGACTCGGATGACTCTTCCACGGAGAAGGAGGAGCGGAACCTCAACTGGACCCCAGCGGAGATGACCGGGCCGCCCCTGGGTCCCAAACGCAGACTGCAGCCAGTGAAGGACTCTGGCCTGATCAACCTCTGTGCCAGTGTTCCCCCTGTGCCAGGCAGTGCAGGGCCATCAGAAGCCCGGGCTGCCCTAGTACCCAGTGCTGCCCAGCCGGgggcagagaggacagagggcatGGCAGGCTGGAGCCCAGCGGCCAGGACACTACGGAACATCACCAACAACTCTGACATCCAGCAGACCACAAGGCCCCCCAACGTTGCACACATCCTACAGAGTCTCTCTGCCTCAACGAAGATAttagagcagcagcagcaaacgAACCAGGGCCAGCCCAACGCCCAACCCAACCCGCTCCTGTTCAACCAAGCGAAGCCCCAAGGTCAGCAGCAGCTCACAGCCGAAGCACAGCAGCAGTTACTGCAGCAGCAGTCTCATCAGGTcccccaacaacaacagccacaacaacaacagccacaacaacaacaacaacaacagccacaacAACAACACCCACCTCAGCAGCTGTCACAGCAGCAGCACCCCATGCTGCAGCATCTCCCACCACAGCAACTCATGCAGTTGCAccaccagcaacaacaacaacagcagcagcagccgcaGGTTCCTCAGCCAGGTTTCCCTCCTCAGTTGCCACAACAACAAGCACATCAGTTCATCCAGCAGCAGCCACAGCAACAGCAGATCCACCAACAACAGATCTTCacccagcaacaacaacaaccacaacatgcATTCTCGCAGCAACAACTGCGGCCGCAGCAGCTCCTGCGGCCACcaatgcagcagcagcagcagctgcagcagcagCATGCTTTACAACAGCAGTTACAGCAGTTCCAACAGCACAGGCTCCAGCAACagctgcagcagcaacagcagcagcagcaacagcagcagaacCAGCAGCAACAGCAACTCCATCAACAACACctccaacagcagcagcagcagcatttcCTGCAGCAACAGATGCAGCAGCAGCACATGCAGCAgctccagcaacaacaacagcagcagcagcatctgaAGAGCCAGCAGCAGTCGCTGCAGCAGCATCCAAGCCAGCAGCCACTCCAGCAGCCGCAGCAGCAGCAAGGGTCACTACAGCCTCAGCTCCAGCCGCCTCAAGTGCACCAGCTGTTTGGCCACGAGCCAGGACAGGAGATTCCTGAAGATGGCTTCTTGGTGGGCTGTGTGTTTGCTGTTGCTGACTACCCAGAGCAGATGGCAGACAAGCAGCTCCTTGCCACGTGGAAGAGAATTATCCAGGCCTATGGTGGAATTGTGGACTCCTCTCTTAACAACcgctgcactcacctgctctgtgaAACTCAAGTTAGCAGCATGTATGTCCAGGCCCTACGGGAGGGGAGACGCTGTGTCACTGCCCACTGGCTGAACACAATCCTGAAAAAAAAGAAGATGGTTCCTCCCCACAGAACCCTACACCTCCCCTTCGCCTTCCCACCTGGAGCGAAGCCCTGCTCACAACACATCATCTCTGTGACTGGCTTTGTGGACTCAGACCGTGATGACCTGAAGCTAATGGCCTATCTGGCAGGAGCCAGATACACAGGCTACCTCTGTCGTAGCAACACCGTGCTCATCTGTAAAGAGCCCAGTGGTCTGAAGTATGAGAAGGCCAAGGAGTGGAGGATCCCCTGCGTCAATGCCCAGTGGCTCTGTGACATCCTCCTGGGGAACTTTGAGGCTCTCCGGCAGATCCAGCACAGCAGATACTCCAACTTCAACCTGCAGGAACCACTCATCCCCAACCAGCATCTGGTTCAGAACCTACTGGGTGCTTGGCGGGCTCCTGTGAAGGTTTCACCTGATGCGTTGGCAGCATTGCAGCTGCAACAGAAGCAGAGACAGTCTGAGTCAAACTCCCAGCCTCCAAATAAGAAGCCAAGACTTGAGGAGATTCAATCCCCAACCAAGAAGCTTCCACCAGAGTCCACACCGTACATTTTCTTCACTGGCTTTGAGCCAACACAGGTCCAACAATTCATGAAGAGGCTGCACAACCTTGGAGGGGAGATTGCAGAGAGCGCTCAGAAGTGCACCCATCTTGTGGCCAACAAGGTGACGAGGACGGTGAAGTTTCTCACAGCCATGTCAATCGTCAAGCACATCGTCACCCCTGAGTGGTTAGAAGAGAGCTGGAAGAGCCAGAAGTTTGTCGATGAGCAGAACTACATGCTGAGAGATGCAGAGGCAGAGGTGCTGTTTGGCTTCAGTCTGGAAGAGTCACTGAAGAGGGCCCACACTGCACCACTCTTCAAGggcAAGTATTTCTACATTACCCCTGGGATCTGTCCCAGCCTTATCACTATGAAAGCCATTGTAGAGAGCGCAGGAGGCAAGGTGCTCCCCAAGCAGCCCTCCTTCCGCAAGATAATGGAGCACAAGCAGAACAAGAACCTTGCTGAGATCATCCTGATATCATGTGAGAATGATCTTCATCTCTGTAGAGAGTACTTCTTGAAGAACATTGCCCAGCTCACCACTTTCCTTAACAATCTCACATATAAATTCACATGATGGCGACGACAAGAAGGTGAAGATGAGGAGGCAGCAAGGAAGGCTAAAAACAAGTTGCAATGTACAGTCACACTACCCTTGATATTTTGCAAGATTTTGTACACTGTGGATAGATAATCGGTCGTTTTGTAGCTTTTTGTAACAACCGTtaataatacatacatacatctttgttatttttgtggactgaatgtttaaattatggaTTTTAACATGTTTTATTGTATTGTCAAAATGTTCCTGCAATTATTCAACACTTTTGGAATAAAATCAGAACTTTGTTGTCAACATGAA

Function

NR:

description
PAX-interacting protein 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K14972 PAXIP1, PTIP; PAX-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985986.1 False 3902 mRNA 0.52 20 65389548 65408607
XM_036985989.1 True 3878 mRNA 0.52 19 65389548 65408613

Neighbor

gene id symbol gene type direction distance location
c8h10orf67 cssa14h10orf67 coding downstream 98738 65269996 ~ 65290810 (-)
cahz LOC100135827 coding downstream 253875 65129974 ~ 65135673 (-)
cdh6 LOC106569244 coding downstream 595375 64758400 ~ 64794173 (-)
c8h5orf22 cssa14h5orf22 coding downstream 669674 64711467 ~ 64719874 (-)
LOC110530341 LOC106569246 coding downstream 703894 64669470 ~ 64685654 (-)
cnpy1 LOC106569234 coding upstream 17354 65425967 ~ 65447350 (-)
shhb LOC106569233 coding upstream 75047 65483660 ~ 65486476 (-)
LOC110530358 LOC106569231 coding upstream 111637 65520250 ~ 65546632 (-)
LOC110530362 LOC106569229 coding upstream 200165 65608778 ~ 65637987 (-)
LOC110529129 LOC106569288 coding upstream 282873 65691486 ~ 65692775 (-)
G736134 NA non-coding downstream 3014 65383228 ~ 65386534 (-)
G736049 LOC106569241 non-coding downstream 138359 65250850 ~ 65251189 (-)
G735971 NA non-coding downstream 263386 65122982 ~ 65126162 (-)
G735863 NA non-coding downstream 422423 64966805 ~ 64967125 (-)
G735853 NA non-coding downstream 434131 64955134 ~ 64955417 (-)
G736188 NA non-coding upstream 63880 65472493 ~ 65472965 (-)
G736190 NA non-coding upstream 66376 65474989 ~ 65475294 (-)
G736296 NA non-coding upstream 234742 65643355 ~ 65644138 (-)
G735880 NA other downstream 349307 64990301 ~ 65040241 (-)
LOC110530961 dhx9 other downstream 3204368 62165849 ~ 62185180 (-)
G731764 NA other downstream 3341429 62045035 ~ 62048119 (-)
LOC110530228 LOC106569007 other downstream 7525671 57858233 ~ 57864165 (-)
G726900 NA other downstream 7542859 57820047 ~ 57846689 (-)
G736216 NA other upstream 109554 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 692483 66101096 ~ 66101627 (-)
LOC110530385 LOC106569212 other upstream 785041 66192359 ~ 66210028 (-)
G737449 LOC106569204 other upstream 1150583 66559196 ~ 66560517 (-)
G737422 LOC106569284 other upstream 1305080 66713693 ~ 66714496 (-)

Expression


Co-expression Network