cnpy1 (LOC106569234)


Basic Information

Item Value
gene id cnpy1
gene name LOC106569234
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65425967 ~ 65447350 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613340.2
CAACGCCTGGAACAAGCACGTAAGTAGACACTGTCCACTGACAGTAAGGTAGATATGATCATGGTTCATTCAAAACAGGCGAACATTAAAAAACGAACTTCACTTTAGCCGTTTGTTTTATGTACAGTCAGCATTCACAACGTTGTCCCTCGCGTCTGAATCCGACTTCACTGCTGTAACCTACCGTGCTGAAAAGTTCCTAATTCTTACTCACCTGACTGTTGAATCAGACCAAGGGGCACCTCAAGGACCACTAACCTCAAGGACCTCTAACACCGGGTACGAATATGGCACCATGGATTATTCAAATTGCCTTGGTGGCAATGAGTATCTTAACCGAAACTACTGAAGGGAAAAAAGACACGGTGCTGTATTGTTCAGCATGCAGGGCTATTGTTGATGAGCTCAATTATTCAATCAGTCAGATTGATCCGAAGAAGACAATCCATGTGGGAGGCTTCAGACTCAACCCTGATGGGAGCCTGACTGATAAAAAGGTCCCTCTTGCTAGGTCTGAGGCCAACTTGAGTGAGCTTCTGGATGGAGTTTGTGGTAGCATGAGTGACTATGCTCTTCATGTGGACCCAGACACCAAGATAAAACAATACAAAAGATTTGCTCCAAGAAGTTCTGATGCTGGGGATTTTCCTGATTTTAACAATTTCAAGTTTGACGGCCCAGAGGGATCCAATGCCCTAAAATTTGTGTGTGAAAGCATTGTGGAGGAGTTTGAAGATGATATCATCTCTCTCTTTGCCAAAGAGACAGACCATGTGGTCGACAAGTTATGCAATGAAGTATCAGATCACTGTAAAGGCGCCAAATTCCAGAGTGACGAACTATAGTTTTACATGCATCTCTGCTGCCGATGACCGGACCAGTTTAGATATATATTTCAAATGAAGAAATCATTCTTGAAGGATATTGTATCAATCAACTTGAATACTTATAAATAAAGTTTTCTATTTTGAATTGAGATA
>XM_021613342.2
CAACGCCTGGAACAAGCACGTAAGTAGACACTGTCCACTGACAGTAAGGTAGATATGATCATGGTTCATTCAAAACAGGCGAACATTAAAAAACGAACTTCACTTTAGCCGTTTGTTTTATGTACAGTCAGCATTCACAACGTTGTCCCTCGCGTCTGAATCCGACTTCACTGCTGTAACCTACCGTGCTGAAAAGTTCCTAATTCTTACTCACCTGACTGTTGAATCAGACTACACAGACTCTGCAAAGATTCATCATTCACTACCCTCTTAACTTTTTGCTAGACCAAGGGGCACCTCAAGGACCACTAACCTCAAGGACCTCTAACACCGGGTACGAATATGGCACCATGGATTATTCAAATTGCCTTGGTGGCAATGAGTATCTTAACCGAAACTACTGAAGGGAAAAAAGACACGGTGCTGTATTGTTCAGCATGCAGGGCTATTGTTGATGAGCTCAATTATTCAATCAGTCAGATTGATCCGAAGAAGACAATCCATGTGGGAGGCTTCAGACTCAACCCTGATGGGAGCCTGACTGATAAAAAGGTCCCTCTTGCTAGGTCTGAGGCCAACTTGAGTGAGCTTCTGGATGGAGTTTGTGGTAGCATGAGTGACTATGCTCTTCATGTGGACCCAGACACCAAGATAAAACAATACAAAAGATTTGCTCCAAGAAGTTCTGATGCTGGGGATTTTCCTGATTTTAACAATTTCAAGTTTGACGGCCCAGAGGGATCCAATGCCCTAAAATTTGTGTGTGAAAGCATTGTGGAGGAGTTTGAAGATGATATCATCTCTCTCTTTGCCAAAGAGACAGACCATGTGGTCGACAAGTTATGCAATGAAGTATCAGATCACTGTAAAGGCGCCAAATTCCAGAGTGACGAACTATAGTTTTACATGCATCTCTGCTGCCGATGACCGGACCAGTTTAGATATATATTTCAAATGAAGAAATCATTCTTGAAGGATATTGTATCAATCAACTTGAATACTTATAAATAAAGTTTTCTATTTTGAATTGAGATA
>XM_021613341.2
GTGGCAACGCCTGGAACAAGCACGTAAGTAGACACTGTCCACTGACAGTAAGGTAGATATGATCATGGTTCATTCAAAACAGGCGAACATTAAAAAACGAACTTCACTTTAGCCGTTTGTTTTATGTACAGTCAGCATTCACAACGTTGTCCCTCGCGTCTGAATCCGACTTCACTGCTGTAACCTACCGTGCTGAAAAGTTCCTAATTCTTACTCACCTGACTGTTGAATCAGGGTACGAATATGGCACCATGGATTATTCAAATTGCCTTGGTGGCAATGAGTATCTTAACCGAAACTACTGAAGGGAAAAAAGACACGGTGCTGTATTGTTCAGCATGCAGGGCTATTGTTGATGAGCTCAATTATTCAATCAGTCAGATTGATCCGAAGAAGACAATCCATGTGGGAGGCTTCAGACTCAACCCTGATGGGAGCCTGACTGATAAAAAGGTCCCTCTTGCTAGGTCTGAGGCCAACTTGAGTGAGCTTCTGGATGGAGTTTGTGGTAGCATGAGTGACTATGCTCTTCATGTGGACCCAGACACCAAGATAAAACAATACAAAAGATTTGCTCCAAGAAGTTCTGATGCTGGGGATTTTCCTGATTTTAACAATTTCAAGTTTGACGGCCCAGAGGGATCCAATGCCCTAAAATTTGTGTGTGAAAGCATTGTGGAGGAGTTTGAAGATGATATCATCTCTCTCTTTGCCAAAGAGACAGACCATGTGGTCGACAAGTTATGCAATGAAGTATCAGATCACTGTAAAGGCGCCAAATTCCAGAGTGACGAACTATAGTTTTACATGCATCTCTGCTGCCGATGACCGGACCAGTTTAGATATATATTTCAAATGAAGAAATCATTCTTGAAGGATATTGTATCAATCAACTTGAATACTTATAAATAAAGTTTTCTATTTTGAATTGAGATA

Function

NR:

description
protein canopy-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613340.2 False 980 mRNA 0.42 7 65425967 65447346
XM_021613342.2 False 1035 mRNA 0.42 7 65425967 65447346
XM_021613341.2 True 936 mRNA 0.41 6 65425967 65447350

Neighbor

gene id symbol gene type direction distance location
paxip1 LOC106569237 coding downstream 17354 65389548 ~ 65408613 (-)
c8h10orf67 cssa14h10orf67 coding downstream 135157 65269996 ~ 65290810 (-)
cahz LOC100135827 coding downstream 290294 65129974 ~ 65135673 (-)
cdh6 LOC106569244 coding downstream 631794 64758400 ~ 64794173 (-)
c8h5orf22 cssa14h5orf22 coding downstream 706093 64711467 ~ 64719874 (-)
shhb LOC106569233 coding upstream 36310 65483660 ~ 65486476 (-)
LOC110530358 LOC106569231 coding upstream 72900 65520250 ~ 65546632 (-)
LOC110530362 LOC106569229 coding upstream 161428 65608778 ~ 65637987 (-)
LOC110529129 LOC106569288 coding upstream 244136 65691486 ~ 65692775 (-)
LOC110530368 LOC106569223 coding upstream 290911 65738261 ~ 65882379 (-)
G736134 NA non-coding downstream 39433 65383228 ~ 65386534 (-)
G736049 LOC106569241 non-coding downstream 174778 65250850 ~ 65251189 (-)
G735971 NA non-coding downstream 299805 65122982 ~ 65126162 (-)
G735863 NA non-coding downstream 458842 64966805 ~ 64967125 (-)
G735853 NA non-coding downstream 470550 64955134 ~ 64955417 (-)
G736188 NA non-coding upstream 25143 65472493 ~ 65472965 (-)
G736190 NA non-coding upstream 27639 65474989 ~ 65475294 (-)
G736296 NA non-coding upstream 196005 65643355 ~ 65644138 (-)
G735880 NA other downstream 385726 64990301 ~ 65040241 (-)
LOC110530961 dhx9 other downstream 3240787 62165849 ~ 62185180 (-)
G731764 NA other downstream 3377848 62045035 ~ 62048119 (-)
LOC110530228 LOC106569007 other downstream 7562090 57858233 ~ 57864165 (-)
G726900 NA other downstream 7579278 57820047 ~ 57846689 (-)
G736216 NA other upstream 70817 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 653746 66101096 ~ 66101627 (-)
LOC110530385 LOC106569212 other upstream 746304 66192359 ~ 66210028 (-)
G737449 LOC106569204 other upstream 1111846 66559196 ~ 66560517 (-)
G737422 LOC106569284 other upstream 1266343 66713693 ~ 66714496 (-)

Expression


Co-expression Network