shhb (LOC106569233)


Basic Information

Item Value
gene id shhb
gene name LOC106569233
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65483660 ~ 65486476 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613343.2
CACCTGCTTTGGTAGCGGTCGTTTGATAGCCTACTAGAGTAGAGAGAAAAACGAGGACACTGATACAGGGTAGAGTGTGAGAGACTGCGAGATAAGTGAGAGGATATAGCCAGCCTACACAACAGGGACCTCAATACAATTAATCCAATGGACGTGATGCTTATACTGATAAGAATTGCGCTCGTGGGATTCATCTGCCTGTTCCTAGCATCCGCTGGGTTGGCCTGTGGTCCAGGCAAGGGATATGGAAAACAAAGACATCCGAAAAAACTAAAGCCTTTGGCTTACAAGCAGTTCATTCCCAACGTGGCGGAGAAAACCCTTGGGGCCAGTGGCAAATACGAAGGGAAGATCACAAGGAACTCTGAAAGATTTAAAGACCTGACACCAAACTACAATCCTGACATTATTTTCAAAGATGAGGAAAACACTAATGCTGACAGACTTATGACACAGAGATGTAAGGACAAACTGAACTCTTTGGCTATTTCAGTCATGAATCAATGGCCGGGAGTGAAGCTGCGCGTGACAGAAGGCTGGGACGAGGATGGACACCATTTCGAAGAATCTTTACACTATGAAGGAAGGGCTGTGGATATCACCACCTCTGACAGAGATAAGAGCAAATATGGAATGCTATCCCGGCTCGCGGTGGAGGCAGGATTCGACTGGGTCAATTATGAATCCAAAGCCCATATTCATTGTTCTGTGAAAGCAGAAAATTCAGTTGCTGCAAAGTCGGGTGGCTGCTTCCCTGGATCTGCCTCAGTTCTCCTCGAGGATGGTCGAAGCAAGCTGGTAAAAGAACTGGAGGTGGGCGACAAGGTGTTAGCGGCAGACATAGAAGGAAATATTGTGTCCAGCGATTTCCTCATGTTCTTGGACAAAGATCCAGTGTCAAAACGCGAATTTTATGTTTTTGAAACAGAGAAGCCCAACCGAAAGTTAAGACTGACCCCGGCTCACCTGGTCTTCATCACCAGTAACGTTACGGATGACGATATGACTGCAGTGTTTGCCAGTAATGTAAAACCTGGGCAACAGGTGTTTGTTGTGGATGAGGCCGTAGACCACCTGAAGGCAGTCACTGTGGAAAGGATTTACGTGGAAGAATACGAGGGATCTTATGCCCCAGTAACCTCACAAGGGACCATCATAGTTGACCATGTTTTGGCGAGCTGTTACGCGGTAATCGAGGACCACAAATGGGCGCACTGGGCCTTTGCGCCAGTCAGGTTGGGGCACGCGTTGATGTCCTTCACAGATCTAGTCAAAAAGCGCGAGGACATACGTCAGAGAGATGGAATACACTGGTACTCAGACATTCTATACCACATAGGGACATTGCTGCTGGACATAAACTCCTTTCATCCTCTAGGAATGTCCCAAAGCTGAGACTTTAGTCGTTTTTATTTGTCAATTTCAAAGACACAAATGAATGCTCTTAAAGATGGAAATACTTTTGGGCACTGGAGCCATACATGTATATTCTTATTTATTCTCTTGTTTTCCTCCTATCAAGAACCAGTCAAATTTAGTCGTCTAGGATAGTGTGAACAATCTGTGAATAATTTATTTCTAAACATTTGAGAAAAAATGTTGATGATCGTTATGTGCAAATGTGCAAATGTGAATTGACTGTTATATTTTCTTGGATGAACATAGTGTTGCCTCAATAAATTATGTTTTTATACACTGAAA
>TU835949
TGTTTGTTGTGGATGAGGCCGTAGACCACCTGAAGGCAGTCACTGTGGAAAGGATTTACGTGGAAGAATACGAGGGATCTTATGCCCCAGTAACCTCACAAGGGACCATCATAGTTGACCATGTTTTGGCGAGCTGTTACGCGGTAATCGAGGACCACAAATGGGCGCACTGGGCCTTTGCGCCAGTCAGGTTGGGGCACGCGTTGATGTCCTTCACAGATCTAGTCAAAAAGCGCGAGGACATACGTCAGAGAGATGGAATACACTGGTACTCAGACATTCTATACCACATAGGGACATTGCTGCTGGACATAAACTCCTTTCATCCTCTAGGAATGTCCCAAAGCTGAGACTTTAGTCGTTTTTATTTGTCAATTTCAAAGACACAAATGAATGCTCTTAAAGATGGAAATACTTTTGGGCACTGGAGCCATACATGTATATTCTTATTTATTCTCTTGTTTTCCTCCTATCAAGAACCAGTCAAATTTAGTCGTCTAGGATAGTGTGAACAATCTGTGAATAATTTATTTCTAAACATTTGAGAAAAAATGTTGATGATCGTTATGTGCAAATGTGCAAATGTGAATTGACTGTTATATTTTCTTGGATGAACATAGTGTTGCCTCAATA

Function

NR:

description
tiggy-winkle hedgehog protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613343.2 False 1701 mRNA 0.44 3 65483660 65486476
TU835949 True 633 lncRNA 0.42 1 65483683 65484315

Neighbor

gene id symbol gene type direction distance location
cnpy1 LOC106569234 coding downstream 36310 65425967 ~ 65447350 (-)
paxip1 LOC106569237 coding downstream 75047 65389548 ~ 65408613 (-)
c8h10orf67 cssa14h10orf67 coding downstream 192850 65269996 ~ 65290810 (-)
cahz LOC100135827 coding downstream 347987 65129974 ~ 65135673 (-)
cdh6 LOC106569244 coding downstream 689487 64758400 ~ 64794173 (-)
LOC110530358 LOC106569231 coding upstream 33774 65520250 ~ 65546632 (-)
LOC110530362 LOC106569229 coding upstream 122302 65608778 ~ 65637987 (-)
LOC110529129 LOC106569288 coding upstream 205010 65691486 ~ 65692775 (-)
LOC110530368 LOC106569223 coding upstream 251785 65738261 ~ 65882379 (-)
LOC110529131 LOC106569222 coding upstream 407493 65893819 ~ 65895050 (-)
G736190 NA non-coding downstream 8366 65474989 ~ 65475294 (-)
G736188 NA non-coding downstream 10695 65472493 ~ 65472965 (-)
G736134 NA non-coding downstream 97126 65383228 ~ 65386534 (-)
G736049 LOC106569241 non-coding downstream 232471 65250850 ~ 65251189 (-)
G735971 NA non-coding downstream 357498 65122982 ~ 65126162 (-)
G736296 NA non-coding upstream 156879 65643355 ~ 65644138 (-)
G736298 NA non-coding upstream 160608 65647084 ~ 65647297 (-)
G736312 NA non-coding upstream 181811 65668287 ~ 65670379 (-)
G735880 NA other downstream 443419 64990301 ~ 65040241 (-)
LOC110530961 dhx9 other downstream 3298480 62165849 ~ 62185180 (-)
G731764 NA other downstream 3435541 62045035 ~ 62048119 (-)
LOC110530228 LOC106569007 other downstream 7619783 57858233 ~ 57864165 (-)
G726900 NA other downstream 7636971 57820047 ~ 57846689 (-)
G736216 NA other upstream 31691 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 614620 66101096 ~ 66101627 (-)
LOC110530385 LOC106569212 other upstream 707178 66192359 ~ 66210028 (-)
G737449 LOC106569204 other upstream 1072720 66559196 ~ 66560517 (-)
G737422 LOC106569284 other upstream 1227217 66713693 ~ 66714496 (-)

Expression


Co-expression Network