LOC110530358 (LOC106569231)


Basic Information

Item Value
gene id LOC110530358
gene name LOC106569231
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65520250 ~ 65546632 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985990.1
TACTACTAATCTACACATTCGGTCACAAACCAAACCACATGAAACTTTTAAGTCCTTGTGGAAATGTCGACATGAACAGAAAAGCCTGATGAGCTCTTCAAAGACCGACCTGATGCAGAACAAGACATACCACCTGTCTATGATTCATGGAGATAATGCTACAGAGATTTCTGCCAAAATATTTGAGTGGTCTCTGCAAGGTGACACTGTAGCGTTGGGAGAGCACTCAGCCCTGCTGGGAGTCCGTGACCAAGCCAATGCCAGCCCTCTGCATTACGCCACCTCACACGGGCACATCAGCACCATACAGCTCATTGTGCAGTTGACTGGTCCAGATGAACTGAATGCCCGTGATGAGGAGGGCAACACTCCattgcactgggctgtgcagaggACCCAGAGAGAGAGCTGTGCTTGCCTGCTGGACCTGGGGGCAGACTCGAACATCCTCAACCTCCGCCTCATGTCTCCCCTACACCTGGCTGTCAGTCTCGGACACAACCCTCTCGTTGAGCTGTTACTGTCTCACAGCAACACGGATTCCAACCTGATGGGAGGCCAGGGGAACACACCTCTAATGTTGGCCTGCTCGGTTGATAACCATGAAGCTGTCCGTCTACTTTTTAAATACAGAGCCAGACTATGTCAACAGAACAAGCTGGGACATTATCCAATTCACGCAGCAGCGTTTGCGGGGGCTAAAAAATCTATGCTGGTGGTTCTTCAGAAAGGTGAGGAGATGGGTTTCTCAACTGAAATGCACATCAACTACGTGGACAAATCATTCAGCACTCCTCTTCATCTGGCCATCCATGGAGGAAACCTGGAGGCAATCAAACTCTGCATAGAACAGGGAGCAAAAATTGACCAAAAACAGTGTGACAAATCCACAGCCCTCCACTTTGCCTGCACCCAGGGAGCATCCGAGGCCGTCAAACTCATGCTATCGGCATATGATAGAGTCTGTGATGTCATCAATATCCCAGATGGAGCTAGCCAAACTCCACTGCATAAGGCAACAATATTTGACCATGTTGGATTGGCTGAGTACCTCATTTCAAAGGGTGCAGACATTAATTCCATTGACTGTAAGGGTCATACGCCACTGCTTCTGGCAACAAGCTGTAGTGCATGGAAAACAGTGGGCCTTCTTCTTACACATGGGGCTAATTTGAAAATAAAAGACAAATATGACTGCAATTTCCTTCACCTTACCATCTTGCAGCCTAAAGGTCTGAAAAACCTTCCTCCAGAAGTCTTACAGTGCAGCAATGTGAGAGAGCTCCTGGGTGCGGAGGACAAGGAGGGTTGTACTCCCCTGCATTACGCCTGCAGACTGGGAATCCCAGAGTCAGTGACGGACATGCTCGGACTCAACGTCTCGCTAGATCAGAAGTCTAAGCAGAAGAAATCTGCACTGCATTTCGCAGCCGAGTATGGGAGGATAAACACCTGCCACAGACTCCTGGAGTGGAtgacctgcaccaggctgctgaacgagggagatgagagggggatgactcccctccacctggcatcCCGAGGCGGCCATATTAAAGTGCTGGAGCTACTGCTGCGGAAAGGAGCTCTGTTCCACAGTGATTCTAAAGGTTGGACCTGTCTACATCACGCTGCAGCAGAGGGATATACCCAGACCATGATCATACTCCTGCAATCAAATATCAAACTGCTGGACAAAACAGATGAAGACATGAACACGGCGTTACATCTGGCTGCCAGGGAGGGCCATGCGGCTGCAGTGACACTGCTCCTGGGCAGAGGGGCCCAGATGACGCTCAACAAGAGTGATGCCTCCTTCCTCCACGAAGCTGTTCTCAACGGCAGGAAAGACGTTGTCTTCGCTGTCATCCACAATGAGAGATGTGCTGAGGCTATGCTATTGTTCGAAGTGAAGTCAACTAAGCGATGTGTTGTCATGGACATGATAGAGTTCCTGCCTGAGTCATTCaaaCATCTTTTGGACACTTGTGTGAAGGAGTCAGATGATGACGTGAATAGTTACAACTACTCTATCGAGTACACTTTCAAATGGCTCCAAGCTCCCATTCATGTCATTAAGCTTGGAAAAACAGACAAAAGCTACTACTTCCAGCCTCTCACTGCTCTGAACTCCATGGTGCAATTTAATTGCATAGAGCTTCTGACCCATCCTGTCTGCAAGAAGTATCTAGAAATGAAATGGAACGCCTATGGTATCAAAGTGCATCTGCTCAATCTGGCTGTCTACTCACTTGGTCTGGGGCCTCTGACACACATCATTCATACTCTGAAGCCCATCCTCAACACCAATGTCACCCGtactacatcaccatcatcatcagtaaGCATGGTGACCACCTCCCTTGATAAGCAATGCTATCTTATCACCACCTGCATGTTCCTGATTCTTGCCATGAATCTGTACACAGTTGTCAAGGAGCTGGTGCAGATAGTTCAGCAGGGTTCAAAGTACTTCCGTGATGTGACCAATGCATTAGACTGGGGTGCTGCCGTCAGTTCTCTGTTGTTTGTGATCCCTTTACTGATGGACTTCAAGGAGACATGGCATTGGGAGGCTGGGGTAGTGGCAGTTCTTCTATCCTGGATCAACTTTCTCCTCTATTTCCAACGGTTTGAACGTGTTGGGATCTACGTGGTGATGTTTTTAGAGATTGCAAAAACTCTTTTAAGCATCATTGTACTGTTCTTCTTCTTGCTGCTTGCATTTGCATTGGCTTTCTATGCCCTGATACAAGACCAGAACGTTGTTGACAGTGGATCTAGCATGCTGCTAGCAATCATGCAAGTATTTGTCATGATGGTTGGAGAACTCAACTACCAAGAAAATATCCTGAAGCCATTTCTGAACGGGATTCTGCCATTCCCTTCTTTGACCTATGCCATTTTTGTTATGTTTACCTTCGCTGTGCCCATTCTCCTCATGAACCTAATGATTGGCTTGGCTGTTGGTGACATAGCAGAAGTACAGGCGAATGCTGTGCTGAAGCAAATGGGAATGCAGATTGAGCTTCACACTAGTCTGGAGGAGAAGATGCCGTACTGGTTAATGAAGAGGGTTGACCAGGCCTCTCTCACTGAGTACCCTAACAGAGCCTACGGCAGAAAGAGAGAAATGTTCTATGCAATGCTGGGTATGGGGCATGAGAGAATACGTCTCAGCCCCACTTCCCCTCCATCTACACCTATGGAACAGGAAATCAGTAAACAGAAGTACAGGCTGAAGGAGATGTCTAATGTTATCGAGAAGCAGCACAACCTGCTGAAGCTGATCGTTCAGAAGATGGAGATCTGTtcggaggtggaggaggagcatGATGGTCCACAGCTGTTCCAGGGCTACAGGGACAAGCCCCTCCCCTCCCAGAGCAAATGGAACCCTCTGCCGAGGGCACTGGGAGCTAGGAAGTAACATCCATCACATATATTATAATGGACTGACAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0070542 response to fatty acid biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0009593 detection of chemical stimulus biological_process
GO:0050960 detection of temperature stimulus involved in thermoception biological_process
GO:0050974 detection of mechanical stimulus involved in sensory perception biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015276 ligand-gated ion channel activity molecular_function
GO:0008381 mechanosensitive ion channel activity molecular_function

KEGG:

id description
K04984 TRPA1, ANKTM1; transient receptor potential cation channel subfamily A member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985990.1 True 3462 mRNA 0.48 27 65520250 65546632

Neighbor

gene id symbol gene type direction distance location
shhb LOC106569233 coding downstream 33774 65483660 ~ 65486476 (-)
cnpy1 LOC106569234 coding downstream 72900 65425967 ~ 65447350 (-)
paxip1 LOC106569237 coding downstream 111637 65389548 ~ 65408613 (-)
c8h10orf67 cssa14h10orf67 coding downstream 229440 65269996 ~ 65290810 (-)
cahz LOC100135827 coding downstream 384577 65129974 ~ 65135673 (-)
LOC110530362 LOC106569229 coding upstream 62146 65608778 ~ 65637987 (-)
LOC110529129 LOC106569288 coding upstream 144854 65691486 ~ 65692775 (-)
LOC110530368 LOC106569223 coding upstream 191629 65738261 ~ 65882379 (-)
LOC110529131 LOC106569222 coding upstream 347337 65893819 ~ 65895050 (-)
LOC110530374 NA coding upstream 530182 66076814 ~ 66096951 (-)
G736190 NA non-coding downstream 44956 65474989 ~ 65475294 (-)
G736188 NA non-coding downstream 47285 65472493 ~ 65472965 (-)
G736134 NA non-coding downstream 133716 65383228 ~ 65386534 (-)
G736049 LOC106569241 non-coding downstream 269061 65250850 ~ 65251189 (-)
G736296 NA non-coding upstream 96723 65643355 ~ 65644138 (-)
G736298 NA non-coding upstream 100452 65647084 ~ 65647297 (-)
G736312 NA non-coding upstream 121655 65668287 ~ 65670379 (-)
G735880 NA other downstream 480009 64990301 ~ 65040241 (-)
LOC110530961 dhx9 other downstream 3335070 62165849 ~ 62185180 (-)
G731764 NA other downstream 3472131 62045035 ~ 62048119 (-)
LOC110530228 LOC106569007 other downstream 7656373 57858233 ~ 57864165 (-)
G726900 NA other downstream 7673561 57820047 ~ 57846689 (-)
G736841 LOC106569214 other upstream 554464 66101096 ~ 66101627 (-)
LOC110530385 LOC106569212 other upstream 647022 66192359 ~ 66210028 (-)
G737449 LOC106569204 other upstream 1012564 66559196 ~ 66560517 (-)
G737422 LOC106569284 other upstream 1167061 66713693 ~ 66714496 (-)
G738472 LOC106569192 other upstream 1834588 67381220 ~ 67381977 (-)

Expression


Co-expression Network