LOC110529131 (LOC106569222)


Basic Information

Item Value
gene id LOC110529131
gene name LOC106569222
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 65893819 ~ 65895050 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611271.2
TCAGAGACCCAAGACGAGAGAATGGGGAATGAGAGCAATACATCTTGCGACAACATAGATGACAATGTCATACCTAAATCATACAGATATGCATTGCTGTCAATATACACTATAGTGCTTATTGGAGGGATCATCAGCATGTCCCTCATGATCAACAACATCAAGTTCAACGCCTGCTCGGTGACCACCACAGCCGTCTTGAACCTGATCATGGTCCACATCCTCTTTCTCCTGACCGTGCCCTTCCGCCTCTACTTCTACGCGGCCGGCGAGTGGCATCTCGGGCCTAACTTCTGCAAGGTGGTCAGTGCCATGATCCTCGCCCACATGTACCTAGCCTTTATCTTCTACGTGATAATTCTGGTGATCCGCTATCACGACTTCTTCAGGAGTTCTAAGCAGGTGTTCTACAGGAGGCTACATGCCCTAGGGGCCAGTGCTGCTGTCTGGGGCCTCATGCTAATTGTGGTGGTCCCTTTAACTGCTGTGAAATATGGATCATCTACAGACAGTAACACAACCACCAGTGAAAATCAGTGCTTTAACTTTGGAGGAGTTTTTGATGAGAAACATGCTGTAGCTGTGCTGAACTACATCCTCAGTGCTCTCATCATCATACTTACATTAGCCCTGGGCTGTTGTCAGATGTGTATTCTGTGGAGTGTGTACAGAACTCACAGGGCGATGATCTTCTCGCAACAGGAGTTTTGGGCTCAGATCAAAAGTATTTTCTTTATGCTGGCCATTATAGTATGCTTTGTTCCATACAATGCATTCAGGATTTACTATGTGAGTCATTTTAATGCCAATCTCCAGGTAAAGAATGAGATTGCTCTCGCCGTCACAACATTCAGCTGCTTTGACATGCTGACTTTTATAGGGAGAGTGTCGTTCAGACCCTGTGATACAATATGCTGTGTACCTTGATTATCAATACTGATTATTGAGTCAGATATTATTCTATTTGCACCTTATTTGCACCATGTTAACCAAATGTACAAAACtacagtgcacaaaacattaggaacacctgctctttccatgacatagactgaccaggtgaatccaggtgaaagctatga
>TU836286
TTTTCTTTATGCTGGCCATTATAGTATGCTTTGTTCCATACAATGCATTCAGGATTTACTATGTGAGTCATTTTAATGCCAATCTCCAGGTAAAGAATGAGATTGCTCTCGCCGTCACAACATTCAGCTGCTTTGACATGCTGACTTTTATAGGGAGAGTGTCGTTCAGACCCTGTGATACAATATGCTGTGTACCTTGATTATCAATACTGATTATTGAGTCAGATATTATTCTATTTGCACCTTATTTGCACCATGTTAACCAAATGTACAAAACtacagtgcacaaaacattaggaacacctgctctttccatgacatagactgaccaggtgaatccaggtgaaagctatgatcccttattgatgtcacctgttaaatccacttcaatcagtgtagatgaagagaaggagacaggttaaagaaatatgttcaagccttgagacatggattgtgtctgtgtgccattcagagggtgaatgggcaagacaaaatatttaagtgc

Function

NR:

description
probable G-protein coupled receptor 141

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611271.2 False 1082 mRNA 0.45 1 65893969 65895050
TU836286 True 505 lncRNA 0.39 1 65893819 65894323

Neighbor

gene id symbol gene type direction distance location
LOC110530368 LOC106569223 coding downstream 11590 65738261 ~ 65882379 (-)
LOC110529129 LOC106569288 coding downstream 201194 65691486 ~ 65692775 (-)
LOC110530362 LOC106569229 coding downstream 255982 65608778 ~ 65637987 (-)
LOC110530358 LOC106569231 coding downstream 347337 65520250 ~ 65546632 (-)
shhb LOC106569233 coding downstream 407493 65483660 ~ 65486476 (-)
LOC110530374 NA coding upstream 181764 66076814 ~ 66096951 (-)
LOC110530385 LOC106569212 coding upstream 297309 66192359 ~ 66210028 (-)
LOC110530388 LOC106569209 coding upstream 378738 66273788 ~ 66332261 (-)
LOC110530389 LOC106569208 coding upstream 443220 66338270 ~ 66381730 (-)
LOC110530391 LOC106569207 coding upstream 495154 66390204 ~ 66433725 (-)
G736452 NA non-coding downstream 17740 65870544 ~ 65876229 (-)
G736350 NA non-coding downstream 173984 65718415 ~ 65719985 (-)
G736336 NA non-coding downstream 187479 65703306 ~ 65706490 (-)
G736469 NA non-coding upstream 931 65895981 ~ 65896341 (-)
G736471 NA non-coding upstream 2394 65897444 ~ 65898116 (-)
G736481 NA non-coding upstream 13202 65908252 ~ 65909053 (-)
G736482 NA non-coding upstream 14066 65909116 ~ 65909591 (-)
G736483 NA non-coding upstream 14633 65909683 ~ 65910893 (-)
G736216 NA other downstream 365386 65518167 ~ 65528583 (-)
G735880 NA other downstream 853728 64990301 ~ 65040241 (-)
LOC110530961 dhx9 other downstream 3708789 62165849 ~ 62185180 (-)
G731764 NA other downstream 3845850 62045035 ~ 62048119 (-)
LOC110530228 LOC106569007 other downstream 8030092 57858233 ~ 57864165 (-)
G736841 LOC106569214 other upstream 206046 66101096 ~ 66101627 (-)
G737449 LOC106569204 other upstream 664146 66559196 ~ 66560517 (-)
G737422 LOC106569284 other upstream 818643 66713693 ~ 66714496 (-)
G738472 LOC106569192 other upstream 1486170 67381220 ~ 67381977 (-)

Expression


Co-expression Network