LOC110530385 (LOC106569212)


Basic Information

Item Value
gene id LOC110530385
gene name LOC106569212
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66192359 ~ 66210028 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613384.2
CTTGCGTGTGACGTGTACATAGAACGTGAAGTCTCATCACGTGATATGGACGTCTCGCCTCTTATGTGGTTGTACTTTTTGTTATAAAAACAAATTACGACATTAGTCCACTCCCCAGGATATTCTTGTCACTGGTACTGTGAGTTTTCTACTCTAAGCAACAATCATGAGGGTCTCCACAAGCAAACTCCAGCAGATGGCCATCTACACCACCTTGTTGACTGGTGCTGGATGCGGCACAATGTATTACCTTCTGCAAAAGAACTTCTCACGGTCGGACTACCACCGTCTAGCCCTGGAGCAGCTGAAAGCCAACCAGACAGCCATGGACAGTCTgggagcaccacccctgaagGTCCACAACATCCACCTGTCTGACCGACACAACCGGGTGGAACCTTACACGGCTGAGATCAAAATCCCAGTGACAGGATCTAAAGATGGTGGCTACCTCTACACATCCTCAGTAAGAGACCCCCAAACACTTGGGTGGAATTTAACGCAGGCAGTGCTGCAGCTTAGAGAGGGTCAGCGTATTGACCTTCTCACATTCACACCACCGCCAAATAAGACAGAAGGACTTGAGACAGGCAACTGGTCCTCCTGATCTGCTCACCAGTCACCAAAACTACAGTGTGATGAAGTCATTGAGGTCTATCTCAGCTGTCCCAGCAATGACCAGCTCCAACTCTCTGGCATCGAACACTGACACCAGCCGTGAGTCCACCACCTGGAGAAATATTGCAGGAACATAGAACATTAAAAACGATGTAGgagtgtacatactgtatgtgacttgtttcaggtaACTATGTtgcacatcactacttcacaggagaggcatttgaacgagagagagaaagacagagagaaagattgcCAGCCGGGCCTGCCGGTgaaactgctaaactgctttctgactgtacactgtaccgCATGATTTTTACTAACGTGTTAgctctagtagctatgttgactaaaCTTTGTAAGcttgtaaactttaattcatatACTTCTGTAGATTTTAGCAGCCTCATGATGGGTACAaggaaaatgtgagtatcatgtagtagcctaaacctagcGATGTTGCATTGAGCTGggcgaatggaatatgaatgacagtcatccaatatgctgtaatagaaataaggtcatgctaataaaataaataaccatACTCCCTTGGCACTGACCGCCACTTGTGCAGATAATCCTTTCTACcgcagcttttttgaaagatatcatgaAGAAGTACAAAAGCGTTGctaatgctctccactttctggaagaAGCTAGTGCCATGCTGACActctctgactctgaaaatgaatcagatgATGAGGAAATCCCTGATGTAGGTAAACACATTTTCATTGAATCAGATATTGTAGAGTCTTCTGGACAGTGATAGGGAAGAAAATCTGTGGAATTCCCGATGGAAACAGAGTATGATGGCTAAAGAGATGTTAAAAGTTCTGCTGTTCGATTGCAAATATGCGGAGGGAGTTGAAAAGAGagcacagaaggctgttgtatgaAACAACTGTCTCCGAATTTCATCTTCAAACttagggcaaccatggcatctgacAGAGAGGgcgaagcgttcatccatgtatacaagtaagagtctagctagctacattttcagatattatatgttTTTAATTTTGTCAGCAAGTCATTTTCACTGCAAGTTAAAGCTTactgttagctaggtagctaacgttagctggctggctcgagTAGAAATATTATTCACATCTCAGAAATCTacttgcattgctagttatagcctaatgttagctagctatgcatggtggctagctatgacaatcagtaTGGGTTGATATTATtgccacattcaaaacaactgggaactcgaaacTAGGAACTCGGGAAATCTCAGACTTACAACTTCAGTGCGTACAAGACAACTAGGAACTCAGACAAAAcaagctccaactgggaaaaataattttgaacagtcatccaacacGGAATGCCAAGTCCGTGAAcccgggcctctttctagagcccaggctttccaacctgaagatcactgatgtcatgatttgacctggTATTTTTCCAAGTTCcctgttgtcttgaaagcaccataaggttaattgtttagctagcaagctatcaggtagctaatgttagctacctgataagatggcgccggagaTGAAGGCTAACGTTTTGCGTGCCCCCAGCCGATTGTTTTCTTGTTCGTTTATTCGCGTTGattgtaacttatttttgtacttattttgtacataatgttgctgctactgtctcttatgaccgaaaataacttctagacatcaggactgcgattactcaccacggactagcagaatcctttttttcccttTCATGACTCTGTCGAGCCCGACGCGAATGACATACTGcttcctcgggaacaggccccgatccccttgatctgcgtgaagagga
>XM_021613383.2
CTTGCGTGTGACGTGTACATAGAACGTGAAGTCTCATCACGTGATATGGACGTCTCGCCTCTTATGTGGTTGTACTTTTTGTTATAAAAACAAATTACGACATTAGTCCACTCCCCAGGATATTCTTGTCACTGGTACTGTGAGTTTTCTACTCTAAGCAACAATCATGAGGGTCTCCACAAGCAAACTCCAGCAGATGGCCATCTACACCACCTTGTTGACTGGTGCTGGATGCGGCACAATGTATTACCTTCTGCAAAAGAACTTCTCACGGTCGGACTACCACCGTCTAGCCCTGGAGCAGCTGAAAGCCAACCAGACAGCCATGGACAGTCTgggagcaccacccctgaagGTCCACAACATCCACCTGTCTGACCGACACAACCGGGTGGAACCTTACACGGCTGAGATCAAAATCCCAGTGACAGGATCTAAAGATGGTGGCTACCTCTACACATCCTCAGTAAGAGACCCCCAAACACTTGGGTGGAATTTAACGCAGGCAGTGCTGCAGCTTAGAGAGGGTCAGCGTATTGACCTTCTCACATTCACACCACCGCCAAATAAGACAGAAGGACTTGAGACAGGCAACTGGTCCTCCTGATCTGCTCACCAGTCACCAAAACTACAGTGTGATGAAGGTAGAACTGCTACAATTGTCCCCATGTCATCAGGCATGGTGTCGCCATAGCTTTATGAATTGAAGTGTCATAGTCATATTTGAAAAAAGCACCAGAGTGCAGTGCTGGACACTTATTTAGACAAAAGGGCATACACAAGCTGCCTCTTGGTTTGGAATAACCACAGTCATGTTGATGATTTGACCAATGTTTATCAATGCTACTGTGTACATAACATTTACATTCAGGGAAAATGAAAAAAGTGCTACGTCCATAAAATGTCATGCATATTCATTTTGCTCAGCGCTGTCCTGAGCAAAATGTTCATCCTACTGGTGAGAATGAAAGGACAATAACAGAGCAGCAATTGTGTCATATGCAgtggtaaaaaacaacaacatattcctagtataatacaatgcaTCTGATGAACATTTCTCCAGATTAACAATGTAAATTggcagtgttggggaagctactctgaaaagaGATTACCAGCCACCAATTACGTTAAGTAAACTATATTACTCAATCTGCAATGACATAGAATATAAATAGCAAGAACAGATAACTCTGTAATAAGATGTTAAGAGAACGTGTAATTTATCCTATTAAACACAAAAATGTTGTTTCAGGTGAGAATTAGCCAGGTCTGAAAATTAAGGAAATTCTTGCCTACCTcacccatattttatttttacaaaaaaaagtaGTGTTTCATTCCATTAGTTACCTACACCACTAGATGGCAATAAAGTCATTAACTATTGAAAACACTACAAATATTTGAATTTAGTTGCACTACCACAATGTGCAAAATGTAGTTTAATTACTAACTGAACCACATTAAGTTCAGTACACCCCAACACTGGTAATTGCTTAGTCCAAAGCCATATCTTAATATCCAGCACTTGAGAAACATTTAGGCAATGGTTCCagttgtactgtacagtatctgAACAACCAAAAATGTTGTCTCCCAAGGAGGTATTGTTCTATGTTTTCAGATTGATTTATTCGGATGTGACATTTTACAGTGAAAATGAGATCTGTAAAACGTGGAAAATAAACGTGGAAATAAACAGTCAAA
>TU836773
CACGTGATATGGACGTCTCGCCTCTTATGTGGTTGTACTTTTTGTTATAAAAACAAATTACGACATTAGGATATTCTTGTCACTGGTACTGTGAGTTTTCTACTCTAAGCAACAATCATGAGGATCTAAAGATGGTGGCTACCTCTACACATCCTCAGTAAGAGACCCCCAAACACTTGGGTGGAATTTAACGCAGGCAGTGCTGCAGCTTAGAGAGGGTCAGCGTATTGACCTTCTCACATTCACACCACCGCCAAATAAGACAGAAGGACTTGAGACAGGCAACTGGTCCTCCTGATCTGCTCACCAGTCACCAAAACTACAGTGTGATGAAGTCATTGAGGTCTATCTCAGCTGTCCCAGCAATGACCAGCTCCAACTCTCTGGCATCGAACACTGACACCAGCCgtaACTATGTtgcacatcactacttcacaggagaggcatttgaacgagagagagaaagacagagagaaagattgcCAGCCGGGCCTGCCGGTgaaactgctaaactgctttctgactgtacactgtaccgCATGATTTTTACTAACGTGTTAgctctagtagctatgttgactaaaCTTTGTAAGcttgtaaactttaattcatatACTTCTGTAGATTTTAGCAGCCTCATGATGGGTACAaggaaaatgtgagtatcatgtagtagcctaaacctagcGATGTTGCATTGAGCTGggcgaatggaatatgaatgacagtcatccaatatgctgtaatagaaataaggtcatgctaataaaataa
>TU836772
CACGTGATATGGACGTCTCGCCTCTTATGTGGTTGTACTTTTTGTTATAAAAACAAATTACGACATTAGGATATTCTTGTCACTGGTACTGTGAGTTTTCTACTCTAAGCAACAATCATGAGGATCTAAAGATGGTGGCTACCTCTACACATCCTCAGTAAGAGACCCCCAAACACTTGGGTGGAATTTAACGCAGGCAGTGCTGCAGCTTAGAGAGGGTCAGCGTATTGACCTTCTCACATTCACACCACCGCCAAATAAGACAGAAGGACTTGAGACAGGCAACTGGTCCTCCTGATCTGCTCACCAGTCACCAAAACTACAGTGTGATGAAGGTAGAACTGCTACAATTGTCCCCATGTCATCAGGCATGGTGTCGCCATAGCTTTATGAATTGAAGTGTCATAGTCATATTTGAAAAAAGCACCAGAGTGCAGTGCTGGACACTTATTTAGACAAAAGGGCATACACAAGCTGCCTCTTGGTTTGGAATAACCACAGTCATGTTGATGATTTGACCAATGTTTATCAATGCTACTGTGTACATAACATTTACATTCAGGGAAAATGAAAtgaaaagaGATTACCAGCCACCAATTACGTTAAGTAAACTATATTACTCAATCTGCAATGACATAGAATATAAATAGCAAGAACAGATAACTCTGTAATAAGATGTTAAGAGAACGTGTAATTTATCCTATTAAACACAAAAATGTTGTTTCAGGTGAGAATTAGCCAGGTCTGAAAATTAAGGAAATTCTTGCCTACCTcacccatattttatttttacaaaaaaaagtaGTGTTTCATTCCATTAGTTACCTACACCACTAGATGGCAATAAAGTCATTAACTATTGAAAACACTACAAATATTTGAATTTAGTTGCACTACCACAATGTGCAAAATGTAGTTTAATTACTAACTGAACCACATTAAGTTCAGTACACCCCAACACTGGTAATTGCTTAGTCCAAAGCCATATCTTAATATCCAGCACTTGAGAAACATTTAGGCAATGGTTCCagttgtactgtacagtatctgAACAACCAAAAATGTTGTCTCCCAAGGAGGTATTGTTCTATGTTTTCAGATTGATTTATTCGGATGTGACATTTTACAGTGAAAATGAGATCTGTAAAACGTGGAAAATAAACGTGGAAATAAACAGTCAAATGGCAAACAAGCTAAACATGAACCACAATATTAAACAGAAAGTGAAAGAATG

Function

NR:

description
cytochrome c oxidase assembly factor 1 homolog isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613384.2 False 2466 mRNA 0.44 6 66192359 66210028
XM_021613383.2 False 1713 mRNA 0.40 5 66204435 66210028
TU836773 False 774 TUCP 0.43 6 66193654 66209991
TU836772 True 1234 lncRNA 0.37 6 66204304 66209991

Neighbor

gene id symbol gene type direction distance location
LOC110530374 NA coding downstream 95408 66076814 ~ 66096951 (-)
LOC110529131 LOC106569222 coding downstream 297309 65893819 ~ 65895050 (-)
LOC110530368 LOC106569223 coding downstream 309980 65738261 ~ 65882379 (-)
LOC110529129 LOC106569288 coding downstream 499584 65691486 ~ 65692775 (-)
LOC110530362 LOC106569229 coding downstream 554372 65608778 ~ 65637987 (-)
LOC110530388 LOC106569209 coding upstream 63760 66273788 ~ 66332261 (-)
LOC110530389 LOC106569208 coding upstream 128242 66338270 ~ 66381730 (-)
LOC110530391 LOC106569207 coding upstream 180176 66390204 ~ 66433725 (-)
LOC118965631 NA coding upstream 400275 66610303 ~ 66618598 (-)
LOC110530964 LOC106569202 coding upstream 413485 66623513 ~ 66632180 (-)
G736893 NA non-coding downstream 23297 66168482 ~ 66169062 (-)
G736858 NA non-coding downstream 71883 66119950 ~ 66120476 (-)
G736856 NA non-coding downstream 74385 66117772 ~ 66117974 (-)
G736840 NA non-coding downstream 92429 66099728 ~ 66099930 (-)
G736833 NA non-coding downstream 115806 66075644 ~ 66076553 (-)
G736918 NA non-coding upstream 9379 66219407 ~ 66219822 (-)
G736950 NA non-coding upstream 51253 66261281 ~ 66261602 (-)
G736951 NA non-coding upstream 52425 66262453 ~ 66262663 (-)
G736955 LOC106613263 non-coding upstream 57140 66267168 ~ 66267430 (-)
G736944 NA non-coding upstream 59797 66269825 ~ 66270278 (-)
G736841 LOC106569214 other downstream 90732 66101096 ~ 66101627 (-)
G736216 NA other downstream 663776 65518167 ~ 65528583 (-)
G735880 NA other downstream 1152118 64990301 ~ 65040241 (-)
LOC110530961 dhx9 other downstream 4007179 62165849 ~ 62185180 (-)
G731764 NA other downstream 4144240 62045035 ~ 62048119 (-)
G737449 LOC106569204 other upstream 349168 66559196 ~ 66560517 (-)
G737422 LOC106569284 other upstream 503665 66713693 ~ 66714496 (-)
G738472 LOC106569192 other upstream 1171192 67381220 ~ 67381977 (-)
G738502 LOC106569192 other upstream 1210711 67420739 ~ 67421056 (-)
G738504 LOC106569192 other upstream 1213835 67423863 ~ 67425339 (-)
G736888 NA non-coding downstream 4377 66198228 ~ 66199927 (-)

Expression


Co-expression Network