LOC110530388 (LOC106569209)


Basic Information

Item Value
gene id LOC110530388
gene name LOC106569209
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66273788 ~ 66332261 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613388.2
TTCCATGTGGGCGGGGTATTTTCGCGTTGTTGGCAATCAGACCATTTTTTTTCCTCCAAGCAAAGAATACAGAAGTTGGTGAGAAATTGCCCAGAGTAATTTGTTATGACAATGGATACAATACGctattatttcatatttttggtCACGTTTCTTGGAGCAGGAATTCACATATCAATCGcGTTGCAGTGCGACTGCCAGTGGTGTAGTAACAGTACCTGCTACACGGATGGCCTGTGCTTTGTGTCCTTCGTCAAGTCGGGCAGTAAGATGGTGGCACAGGGGAGCAGGTGTTTACTGGAAGCAGACCTCATCCCTAAAGACAGGCCGTTCTTCTGCGCCCCTTCCAAGAAGGAGAACACCGGTGTTGTCCCTGTCTGCTGCAACAGAGACATGTGTAACAAAGACCTCAACCCAGAAGACTACTCAGAGACATTCCCCACAGCCCGTACCCCTCCAATGAGCCCAGTGACCCTGGCGGCCGTCATTGCGGGGCCGGTGTGTATGCTGTGTTTCGTGCTGCTGCTGGTGTTCTATGTGTGCCACAGCCGCTCGATTATCCACCACCGCGTGCCTAACGAGGAAGACCCTGCCATGGACCACCCCTTCCTGGCCGACGGCCATACCCTCAAAAACCTCATCTACGACATGACCACCTCAGGCTCCGGATCAGgtCTGCCCCTATTGGTGCAGAGGACCATAGCCAGGACCATCATCCTGCAGGAGAGCATCGGAAAGGGAAGGTTCGGGGAGGTGTGGCGGGGCCGCTGGCGAGGAGAGGAGGTGGCCGTTAAGATCTTCTCATCCCGGGAGGAGCGCTCGTGGTTCCGTGAGGCCGAGATCTACCAGACAGTCATGCTTCGCCACGAAAACATCCTGGGCTTCATTGCCGCTGACAACAAAGaTAACGGCACGTGGACCCAATTGTGGCTGGTATCAGATTACCATGAGCACGGCTCCCTTTTTGACTACCTGAACAGGTACACGGTGACAGTGGAGGGCATGATCAAGCTGTCCCTGTCCACCTCCAGCGGCCTGGCTCACCTGCACATGGAGATTGTTGGCACGCAAGGTAAACCTGCCATCGCCCACCGCGACCTGAAGTCTAAGAACATCCTGGTGAAGAAGAATGGTACTTGCTGCATCGCTGACCTGGGTTTGGCTGTCCGGCATGACTCTGCCACTGACACCATCGACATCGCCCCCAATCACAGAGTTGGAACCAAGAGGTACATGGCCCCTGAAGTCCTGGATGACTCCATAAACATGAAGCATTTTGAGTCATTCAAGCGGGCAGATATCTACGCCATGGGCCTGGTGTTTTGGGAGATCGCACGGAGATGCTCAATAGGAGGTATCCACGAGGACTACCAGCTGCCCTACTATGACCTGGTCCAGCCAGACCCCTCggtggaggagatgaggagggtggTGTGTGACCAGAAACTACGGGCCAACATCCCCAACAGGTGGCAGAGCTGCGAGGTGCTGCGAGTGATGGCTAAGATCATGAGGGAGTGCTGGTACTCCAACGGGGCGGCCCGCCTCACCGCGCTGCGCATCAAGAAGTCCCTGTCCCAGCTCAGCCAGCAAGAGGGCATCAAGATGTAGACTAGAGGGTCAAgactacctgtctgtctggactTTCTTTCTGTCCCCATCGCTATGTGCTGTTCTCTTCGACATCTCTTTCTctgaagaggaagggaggggatagtacaattcaggtgtgtgtgtgtacctttcaATGTCTCATTCCTTCAAGGCTGATTGGAGAGattgcttctctgctcttctctgttctcctctgatATTGCATCAGGACATGGGTGGATTCTGAATAACATTCTAGACTCTGGATGCAGAGACACAACCTCCTGTCCCTCCCGTTGTTTTGCCTGACTGTATCCATCCCTTCTTTCTTACCCCATGCAAGAAATGCTGGACTTTATTGGGACCTCCTGTAGGAATTCCATTGCAAATATTCTGAATCAAAGAAAATATGCATTGAAAGAAATTCTAAATTTTGATATACCTCTCTCTGGTCATTTCTCAAAGTACCAAGGTCAGTGTCTATTTAAGTGTTTTGTTTAAACATGATTAAGTGTTACTTATATGAATTTCTTTATTTCACTTAATATCTTTCACCttcaaatgtttattttacaGATGCCAGATCCATATTTTTTTATGTGTTTTGTCAAGCAAAACAGAACATGACCTCATTAAGCTTTGTCAAAATGCAGTGAAATATGCAATATCTTGTTCATTGCTATGTATATATATGTTCCTTaaagtgtatacagtgcattcagacagtattcaaaccccttgacttattccacatttgttacgttacagccgtattctaaaattgattaaattattttttccccactgatcaatctacacacagtaccca
>XM_036986007.1
GTTCCATGTGGGCGGGGTATTTTCGCGTTGTTGGCAATCAGACCATTTTTTTTCCTCCAAGCAAAGAATACAGAAGTTGGTGAGAAATTGCCCAGAGTAATTTGTTATGACAATGGATACAATACGctattatttcatatttttggtCACGTTTCTTGGAGCAGGAATTCACATATCAATCGGATGTATTGACCGAaacaaaccgatttgaagacaccaaTCAATGACCTCATTGCGCACCAATGcGTTGCAGTGCGACTGCCAGTGGTGTAGTAACAGTACCTGCTACACGGATGGCCTGTGCTTTGTGTCCTTCGTCAAGTCGGGCAGTAAGATGGTGGCACAGGGGAGCAGGTGTTTACTGGAAGCAGACCTCATCCCTAAAGACAGGCCGTTCTTCTGCGCCCCTTCCAAGAAGGAGAACACCGGTGTTGTCCCTGTCTGCTGCAACAGAGACATGTGTAACAAAGACCTCAACCCAGAAGACTACTCAGAGACATTCCCCACAGCCCGTACCCCTCCAATGAGCCCAGTGACCCTGGCGGCCGTCATTGCGGGGCCGGTGTGTATGCTGTGTTTCGTGCTGCTGCTGGTGTTCTATGTGTGCCACAGCCGCTCGATTATCCACCACCGCGTGCCTAACGAGGAAGACCCTGCCATGGACCACCCCTTCCTGGCCGACGGCCATACCCTCAAAAACCTCATCTACGACATGACCACCTCAGGCTCCGGATCAGgtCTGCCCCTATTGGTGCAGAGGACCATAGCCAGGACCATCATCCTGCAGGAGAGCATCGGAAAGGGAAGGTTCGGGGAGGTGTGGCGGGGCCGCTGGCGAGGAGAGGAGGTGGCCGTTAAGATCTTCTCATCCCGGGAGGAGCGCTCGTGGTTCCGTGAGGCCGAGATCTACCAGACAGTCATGCTTCGCCACGAAAACATCCTGGGCTTCATTGCCGCTGACAACAAAGaTAACGGCACGTGGACCCAATTGTGGCTGGTATCAGATTACCATGAGCACGGCTCCCTTTTTGACTACCTGAACAGGTACACGGTGACAGTGGAGGGCATGATCAAGCTGTCCCTGTCCACCTCCAGCGGCCTGGCTCACCTGCACATGGAGATTGTTGGCACGCAAGGTAAACCTGCCATCGCCCACCGCGACCTGAAGTCTAAGAACATCCTGGTGAAGAAGAATGGTACTTGCTGCATCGCTGACCTGGGTTTGGCTGTCCGGCATGACTCTGCCACTGACACCATCGACATCGCCCCCAATCACAGAGTTGGAACCAAGAGGTACATGGCCCCTGAAGTCCTGGATGACTCCATAAACATGAAGCATTTTGAGTCATTCAAGCGGGCAGATATCTACGCCATGGGCCTGGTGTTTTGGGAGATCGCACGGAGATGCTCAATAGGAGGTATCCACGAGGACTACCAGCTGCCCTACTATGACCTGGTCCAGCCAGACCCCTCggtggaggagatgaggagggtggTGTGTGACCAGAAACTACGGGCCAACATCCCCAACAGGTGGCAGAGCTGCGAGGTGCTGCGAGTGATGGCTAAGATCATGAGGGAGTGCTGGTACTCCAACGGGGCGGCCCGCCTCACCGCGCTGCGCATCAAGAAGTCCCTGTCCCAGCTCAGCCAGCAAGAGGGCATCAAGATGTAGACTAGAGGGTCAAgactacctgtctgtctggactTTCTTTCTGTCCCCATCGCTATGTGCTGTTCTCTTCGACATCTCTTTCTctgaagaggaagggaggggatagtacaattcaggtgtgtgtgtgtacctttcaATGTCTCATTCCTTCAAGGCTGATTGGAGAGattgcttctctgctcttctctgttctcctctgatATTGCATCAGGACATGGGTGGATTCTGAATAACATTCTAGACTCTGGATGCAGAGACACAACCTCCTGTCCCTCCCGTTGTTTTGCCTGACTGTATCCATCCCTTCTTTCTTACCCCATGCAAGAAATGCTGGACTTTATTGGGACCTCCTGTAGGAATTCCATTGCAAATATTCTGAATCAAAGAAAATATGCATTGAAAGAAATTCTAAATTTTGATATACCTCTCTCTGGTCATTTCTCAAAGTACCAAGGTCAGTGTCTATTTAAGTGTTTTGTTTAAACATGATTAAGTGTTACTTATATGAATTTCTTTATTTCACTTAATATCTTTCACCttcaaatgtttattttacaGATGCCAGATCCATATTTTTTTATGTGTTTTGTCAAGCAAAACAGAACATGACCTCATTAAGCTTTGTCAAAATGCAGTGAAATATGCAATATCTTGTTCATTGCTATGTATATATATGTTCCTTaaagtgtatacagtgcattcagacagtattcaaaccccttgacttattccacatttgttacgttacagccgtattctaaaattgattaaattattttttccccactgatcaatctacacacagtaccca

Function

NR:

description
TGF-beta receptor type-1-like

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG:

id description
K04674 TGFBR1, ALK5; TGF-beta receptor type-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613388.2 False 2422 mRNA 0.49 9 66273788 66332260
XM_036986007.1 True 2486 mRNA 0.49 10 66273788 66332261

Neighbor

gene id symbol gene type direction distance location
LOC110530385 LOC106569212 coding downstream 63760 66192359 ~ 66210028 (-)
LOC110530374 NA coding downstream 176837 66076814 ~ 66096951 (-)
LOC110529131 LOC106569222 coding downstream 378738 65893819 ~ 65895050 (-)
LOC110530368 LOC106569223 coding downstream 391409 65738261 ~ 65882379 (-)
LOC110529129 LOC106569288 coding downstream 581013 65691486 ~ 65692775 (-)
LOC110530389 LOC106569208 coding upstream 6009 66338270 ~ 66381730 (-)
LOC110530391 LOC106569207 coding upstream 57943 66390204 ~ 66433725 (-)
LOC118965631 NA coding upstream 278042 66610303 ~ 66618598 (-)
LOC110530964 LOC106569202 coding upstream 291252 66623513 ~ 66632180 (-)
LOC118936436 LOC106569202 coding upstream 301664 66633925 ~ 66636934 (-)
G736944 NA non-coding downstream 3510 66269825 ~ 66270278 (-)
G736955 LOC106613263 non-coding downstream 6358 66267168 ~ 66267430 (-)
G736951 NA non-coding downstream 11125 66262453 ~ 66262663 (-)
G736950 NA non-coding downstream 12186 66261281 ~ 66261602 (-)
G736918 NA non-coding downstream 53966 66219407 ~ 66219822 (-)
G737404 LOC107688523 non-coding upstream 171221 66503482 ~ 66503709 (-)
G737405 NA non-coding upstream 172001 66504262 ~ 66504487 (-)
G737406 LOC106569206 non-coding upstream 172803 66505064 ~ 66505338 (-)
G737407 NA non-coding upstream 174614 66506875 ~ 66507076 (-)
G737426 LOC106569204 non-coding upstream 186234 66518495 ~ 66596241 (-)
G736841 LOC106569214 other downstream 172161 66101096 ~ 66101627 (-)
G736216 NA other downstream 745205 65518167 ~ 65528583 (-)
G735880 NA other downstream 1233547 64990301 ~ 65040241 (-)
LOC110530961 dhx9 other downstream 4088608 62165849 ~ 62185180 (-)
G737449 LOC106569204 other upstream 226935 66559196 ~ 66560517 (-)
G737422 LOC106569284 other upstream 381432 66713693 ~ 66714496 (-)
G738472 LOC106569192 other upstream 1048959 67381220 ~ 67381977 (-)
G738502 LOC106569192 other upstream 1088478 67420739 ~ 67421056 (-)
G738504 LOC106569192 other upstream 1091602 67423863 ~ 67425339 (-)

Expression


Co-expression Network