LOC110530394 (LOC106569203)


Basic Information

Item Value
gene id LOC110530394
gene name LOC106569203
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66649863 ~ 66658816 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613409.2
AATTTCACGACGCAGCCATTTGAAACAACGCCAGTTTCGTGAGgaggagctagctaacgttagttattaGCCAGCCTTTCGTTAACGAAGCTACCTAACTTACATATTCGCATTTATTAGAGACCCTCCGACAATAAACCACCAAGATGTTCAACAGAATGACAAGCCTTTGGATGGGTGATCTGGACCCATACATGGATGAGAATTTCATCAAACAGGCCTTCAGCACTATGGGCGAGACGGCGTATGGTGTTAAGATCATTACCCACAGAGTAACGGGAGGATCGGCAGGCTATTGCTTTGTGGAAATGGCAGACGAAGCTAGCGTTGACCGATGCGTTCACAGACTGAATGGGAAGCTTGTTCCTGGATCAAACCCGCCCAGAAAGTTTAAGTTAAACTATGCAACTTATGGGAAACGGCCAGAAGCTGGCCTGGAATTTTCAGTCTTTGTCGGAGATCTGTCTTCAGAGGTGGATGACTACCAGCTCCATCAGTTCTTCCTGAAGAAGTACCCTTCCTGCAAAGGAGGGAAAGTGGTCTCTGATCAGTATGGTAATTCCAGAGGTTATGGTTTCATCAAGTTTGGGGACGAGAACGAACAGAAGAAAGCCATCGATGAGTGTCAGAACGCCACAGGCCTGGGGACGAAACCAATCAGGATCAGCATAGCTGTGAACAAGAGCCATAAAATGAACAGCTATAACAACCAGAACCACAACTCCTACCACAACAATTACCAACAGCCGTACTATCAACAACCCAACCAGAACTATTACCCTCATTGGGGCTATGACCAGTACAACAGCTATAACTATGGTGGCTATGGTCCCTATGGAGGGTACCCTGCTCCAGGCCCCCATGGGATGATGGGACCCCCACCTCCCATTGGCATGCCCCCCATGCCCACAGACATGCAGACTTCCTCCGAGCAAACACAGGAGTCCACAAATGAGCCTGAAGAAGAGGCAGCAGAAGACCCCAACCCTCAGCTGGATGTGGATGCACTGAACACAGAATACATGGAGAGGAGCGAGGAGCTCTACGATTCACTCATGAACTGTCACTGGCAGCCACTGGATACCATCACGTCAGAAATCCCGCCTTTTTCCAGTTCCTGATCTGTTTCAACTTTCCAGTTTAGTATGAAATTAATTTTCTATAAAAGGGTAAAGTTGTgcagaaaatgtatttttctttatCACCAGTAGACACAGCATGTTTCTTCACTACTGCCTTTGCCATTTGTATATATTGTTCACATCCTTCCccttttgtatttttatttaatggAAGTAATGTTATTTTTCGGTCTGCACTAAACTTTCCTTCTAAATTAAAGTCTAAGTCTAAAAAATCTAAATCTAAGTCTTTCTGGCAGTGCGTTTGTTTGATTCAgaaactgcatttttttttttttttgattaaaTGAAGTAATCAATGGTCGTCATCTCCCAGAcatgaatttgtatttattttcaggAAGAAagaacatttgttttatttttcgCAGATTAAAAACTTCAATTTAAGGTTATATTTCAACAGTTTGTATCACACCTTTTACTTGTGCTTTAATCTTCTTTTTTAAAATTTAAAGTTGCATTATACAGCAATTggtctgccatttcctggttgctaaaattctaattgcttgttttgtcaaacTGAAATTAAGCGAActatgtatagtgtagagaatcattgtaccctctaaaccgctgtgaaatatattttcaataaccaaaaatattgtgttTGCAGATTATGTAcctgaagtaaaagttgtaaaaactaAACTTAAATGTGAAGCATCTACACATTAGGTTTGCTTTAAATGAGTGACGGCTCTAactcatatttctatgtgaatttggtcgtgACACGCAAGAAATGTAACTCAATTGCTATTGGtcatgcacatatttagcagatggtattgtgggtatagcgaaatgcttgtgttcctagctccaacagtgcagtagataCCTTTTCATTCATTCTCAtgatatacattttgttttagacTTGTAATTCATTTTAGCTTTTTTTGTGCCTGGAGCTTTTGGAATAATTCTATTAAAGCTGACTTGGGGGGGTGGGACAGGACGTTGAAGTTGTCTGGTATGTATTATCCAATTATGTGACACCGAACATTTGTGCTTATGCAAAGTTCAGCGCTCGTTCATTTAGTCTGGTTTTCAGAACCACAATTGAACTTCTTACATTACTTGCACTGTCAGATGCATATGTTCAAAAATAAACAGCCTTATGTAA

Function

NR:

description
tRNA selenocysteine 1-associated protein 1-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K25102 TRNAU1AP; tRNA selenocysteine 1-associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613409.2 True 2280 mRNA 0.40 9 66649863 66658816

Neighbor

gene id symbol gene type direction distance location
LOC118936436 LOC106569202 coding downstream 12929 66633925 ~ 66636934 (-)
LOC110530964 LOC106569202 coding downstream 17683 66623513 ~ 66632180 (-)
LOC118965631 NA coding downstream 31265 66610303 ~ 66618598 (-)
LOC110530391 LOC106569207 coding downstream 216138 66390204 ~ 66433725 (-)
LOC110530389 LOC106569208 coding downstream 268133 66338270 ~ 66381730 (-)
elovl1a LOC106569200 coding upstream 13644 66672460 ~ 66682947 (-)
gs02 gs02 coding upstream 139727 66798543 ~ 66801779 (-)
LOC110530968 LOC106569194 coding upstream 396342 67055158 ~ 67176168 (-)
LOC110530404 LOC106569189 coding upstream 819176 67477992 ~ 67528795 (-)
kdsr LOC106569188 coding upstream 870989 67529805 ~ 67537441 (-)
G737421 NA non-coding downstream 1404 66648150 ~ 66648459 (-)
G737472 NA non-coding downstream 30091 66619461 ~ 66619772 (-)
G737471 NA non-coding downstream 32594 66616861 ~ 66617269 (-)
G737466 NA non-coding downstream 46706 66602940 ~ 66603157 (-)
G737462 NA non-coding downstream 51165 66598267 ~ 66598698 (-)
G737503 NA non-coding upstream 28275 66687091 ~ 66687623 (-)
G737504 NA non-coding upstream 35113 66693929 ~ 66694168 (-)
G737512 NA non-coding upstream 47872 66706688 ~ 66707910 (-)
G737419 NA non-coding upstream 61966 66720782 ~ 66723020 (-)
G737423 NA non-coding upstream 65003 66723819 ~ 66724497 (-)
G737449 LOC106569204 other downstream 89346 66559196 ~ 66560517 (-)
LOC110530385 LOC106569212 other downstream 439872 66192359 ~ 66210028 (-)
G736841 LOC106569214 other downstream 548236 66101096 ~ 66101627 (-)
G736216 NA other downstream 1121280 65518167 ~ 65528583 (-)
G735880 NA other downstream 1609622 64990301 ~ 65040241 (-)
G737422 LOC106569284 other upstream 54877 66713693 ~ 66714496 (-)
G738472 LOC106569192 other upstream 722404 67381220 ~ 67381977 (-)
G738502 LOC106569192 other upstream 761923 67420739 ~ 67421056 (-)
G738504 LOC106569192 other upstream 765047 67423863 ~ 67425339 (-)
igfbp1 igfbp1 other upstream 2491527 69150343 ~ 69157726 (-)

Expression


Co-expression Network