kdsr (LOC106569188)


Basic Information

Item Value
gene id kdsr
gene name LOC106569188
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67529805 ~ 67537441 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986042.1
acGGTGGTCAAATTGTCGCATCCGTTCAAAGTGCACAATACGACTTGTTTTGGTTCATATTGCAGCTAGGCAGGAAAATATCGTAGATCCAAGGTCCACCACGGCATTTTCTCTTGGAAGTAAACCCGCTGACACGCTGCCAAATATACTGCTAGAAAACTCCTCTGTGTTTAATCGCCACCCCTTTTGACAAGGGCAAGCCCCCGCGATTCGCTCCTCCTGAGTCTAGAAGCTAACCGAACTGCCAGCTTCACCCATGTCCTCTGAGGAAGAATTGAGTTCAACGATCACGGATTGGCTTTTCTTCAGTTCCTGGTGGCTCTTTTTGCCTTTCATTATGCTTCTAGTCGTCGTTGCATTCGTCGTTGCCTTCGTGTTGCTGTTATACATGATATCCCCTTTGATTAGCCCCAAACCTCTCAAATTAAATGGGGCCCACGTCGTGGTCACTGGAGGTTCCAGTGGAATAGGGAAAAGCATCGCTATGGAGTGCTACAGACAAGGAGCCTTCATCACACTAGTGGCAAGAGACGAGAGTAAATTGGTTCAAGCGAAAAAAGAAGTGGAGAAATGTGCCATTAATGACAAGCAGGTGGTGCTCTGCATATCAGTTGACGTGTCCAAGGACTACAGACAGGTGGAAAGTGTGATTAAGCAGTGCCAAGAAAAGCTTGGTCCGGTGGACATGTTGGTGAACTGTGCTGGGACGTCCTTTTCTGGGAAGtttgaggaggtggaggtggagcgCTTCAGAAGTATGATGGAGGTGAACTACCTGGGCAGTGTGTATCCCACACGGGCTGTAATCACCACAATGAAGGAGCGTAGGATGGGACGCATACTGTTTATCTCCTCCCAGGCTGGCCAGATCGGCCTGTTCGGCTACACAGCCTACTCTCCATCCAAATTTGCCCTGCGTGGGCTGGCTGAGTCCCTGCAGATGGAGATGAAGCCATATAACATTTATGTAACGGTGGCCTACCCCCCTGACACTGACACTCCAGGACTAGCAGAGGAGAATAGGACAAAGCCTTTAGAGACTAGGCTGATCTCTGAGACATCTGGGGTGACTCAGCCGGAGCAGGTGGCTAAGATCGTTGTCAAGGATGCAGTGCAGGGGAACTTTAACAGCTCTGTGGGGCCTGACGGCTACATGCTCTCAGCTCTCACCTGTGGAATGTCACCTGTCACCTCCATCACAGAGGGCCTCCAGCAGATTGTAACCATGGGGCTGTTCCGGACCATTGCTCTGTTCTACCTGGGGAGTTTCGACAGCATTGTGCGTCGCTGTATGATCCAGAGGGAGCAGGCCAAAGCAGCGGACAAGAGGGagtaacaaccccccccccccccccccccccccttcctccactATTATTGCCACTGGAGAACTCACCCCAGCCagccctcatctcctctcccctcccctccattccTTAGAGGGCACAACCCTGGACAGGCTAAATGGCCAGATATCTTGTGCGCCAGTGATAATACCGAAGTAAAGAAAATGGCAGGTGTCCTGTTACTTATTATTAACACATACAATTCTTGGCAGttattttgtttgtccaccttTTTTCATCATTCCAGTGATATTGTTTACTCAAGTGCTCTGTGAAACGTTTTAATTGTATACCTGCTTTTATTGTTAAGGCTGCATTACCCAAGGGTCTATGAGGGCAGACTAAACACTACTAGCTTGCTGTTAAAGTAGGCCTTGTCAACGCCTGAAACTTTAGCCTACTTTTGGGCCACCCTATCCTCCTATTTTTTTTCCATGCAGAGAGGAAAGTAAGGGATTGCCAGTCTGACTGGTTATGTCAGCATGTTGACCTGCAATCCCAAGAATCAGAAGAAACAAGAACACTAACAAACCATGTGTCATACAGACCATTCTGAGTAAGCTATCTTTATCACGTCAAACTACTGTTATTTTCACCAAATGTGTTCCTCCTTACTTCCCAAGCTTTGCAGGCAAAGCTTCTCTTTATTTACTCTGTGTCACCCAGTGCCCTTCCATGTGCTGTGGATGCATTAACGGAGCTTAGATGAGATTTAACAGTGATGAGAGAAGGCAAAGCAAAAATTTAAATTTACTTCCTGGAAATGATCATCCAAGGCATTTTTAGGTAAAATGATTGTATGTGCAAGTATGAGAGAATGTGTGTGCTGTGTAGGAGCCGTGTGAAGAAGCCGAGGGGAAAGATTTTAATTCAGTGTTGTTACAATGTGTTTAAATGACTGTACATTGACCAAACCTactccagggagagagagaagccattGGACACTGGTGGTGGCTGGGGAAAAAATGAAAAACCTCTATTCCTCTTATTTGCATGCCACTTTCACATTTTACTTGTGTTTCTTACCTGAGGTAGAAGCGGTATGTAAAAGGTAGGCATAGGACAGTCGTGCGATGTAGTATGAGAACAAATCCGCTAACATCTGATACCAGCCTCATTCACTCTTTCCTGTCTTCCTATGATGTCTTATCAGTTGTTgatctctgtgtatgtgtgatcTGTGCACATATTTTGCCACGTAGCATCCAAGTGGGCTCTGTGATTAAAGTGATGGGGTAGTGTCTGGACAAGGTGTGGGGTGTGTCTCGCAGGTTCCAGCAAAGACCCTTCAGGCCTGGAGAGGGCACTAGAGCTCTATTTTATATAGAGGCCAAGAGATTAAGAGGGACTGGCAAACTCTGTCTGTGCAGAGCAACATAAAGGAGCTATATGTGCTATTGTATTGTCTAATTTTACATTTCATTCAGTCACTGTGGACACTATCCTATACTCTCTTAACTGTGTAATTTGTCTCAGTAAGTATTCACAGTTCCTTCCTGAAGTCCTCTAACTCCAAGCCTTTTAAACATCCCGTACATCCCGGTACCTTTTTACCTTCTCAATATTCTGCTTAATGGGGAGAGAAAATATCAAATGTGAACTCATGCAAGTCTTCCTTCCATCAACTGTGTGGAGAATGTACTGACCTTTAATGCAAACCATAGGCTACGAATCAGaaagtatacatttttaaatcCACCAATATTTGAATGCCAAAATGTATTAAGAGACCATTTCTGTAAATGCAATGCAACTACTTGTGATTTATTTTGTTTGATGTTGCTGGTCTGTACTGTCCTATAAACCGTTTGTAGTTCAGCCAAGCACTACAACTGTGGGGACCCATTCCAAGCCTTAAGAGAGAACTACGAATGATGTTAATGATAAAATAATAGAATTTATTCACAGAAAATAATGTGGCTTAAGCCGCTTGTGGTTTACCAGTTAATTCCATTTTTCTGCGAAAATGCCAACTCTTTTGGTGTGTTTTTGTTCGTCAATTTCAGATTAGTTTTTGTTCAAAAAGGCCTTACTTAAACCCAAAATAAGAACGTGAGAATGGATGATTCAACTCGGAGGTTCTCATTTAACATTGGTTCAAGGCACATTGTCACTGTCCAGCGCTTAGTGTGTCTACCTGTCATTTCCTCATCTGTACATTGTTAGCTCTGACTCTCTGTCATCTTTAGGTAGCAACACATATATGTTGACGTTTATAGACATTTGATATATGTAGCTCATGGGAAAAGTTGTTTTGTTTGAACACATTTTAAGCTTTGCAAATCAAGCCTATGCTTACAATATGTTAAAACACTACAACCAAGTTGTACCATTGTTAAAATGCTCAGTCACGCTCTAGTTTTCCCATTCATTGATGTTGTCCAGAGATATTTAAAAGAAGATTATAAAATGTTTAAGTACAGTGCTACTGAATATCATTCCTATCTTATTggttgtttttattttgttttggcCAAATGTGTACGAATTTCACCTTGTGTGCCATTGAAAAGAAAAATGTAAGGAGTAGAACAATGTTGCTTTGTCTTATTTTCTTACATGATAAAACTAAATAAATAACCTTGGAAAATGACATTTCCTCTGCTAAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K04708 KDSR; 3-dehydrosphinganine reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986042.1 True 3958 mRNA 0.43 10 67529805 67537441

Neighbor

gene id symbol gene type direction distance location
LOC110530404 LOC106569189 coding downstream 1010 67477992 ~ 67528795 (-)
LOC110530968 LOC106569194 coding downstream 353637 67055158 ~ 67176168 (-)
gs02 gs02 coding downstream 728026 66798543 ~ 66801779 (-)
elovl1a LOC106569200 coding downstream 846858 66672460 ~ 66682947 (-)
LOC110530394 LOC106569203 coding downstream 870989 66649863 ~ 66658816 (-)
LOC110530405 LOC106569187 coding upstream 311 67537752 ~ 67570811 (-)
LOC110530412 LOC106569180 coding upstream 232308 67769749 ~ 67818199 (-)
LOC110530414 LOC106569178 coding upstream 403874 67941315 ~ 68125947 (-)
LOC110530416 LOC106569176 coding upstream 625927 68163368 ~ 68180025 (-)
LOC110530419 LOC106569174 coding upstream 719492 68256933 ~ 68269843 (-)
G738562 NA non-coding downstream 35284 67494015 ~ 67494521 (-)
G738507 NA non-coding downstream 99768 67429266 ~ 67430037 (-)
G738508 NA non-coding downstream 100827 67428224 ~ 67428978 (-)
G738506 NA non-coding downstream 102483 67426966 ~ 67427322 (-)
G738504 LOC106569192 non-coding downstream 104466 67423863 ~ 67425339 (-)
G738587 NA non-coding upstream 38879 67576320 ~ 67576541 (-)
G738616 NA non-coding upstream 135571 67673012 ~ 67673616 (-)
G738670 LOC106569186 non-coding upstream 145792 67683233 ~ 67683955 (-)
G738613 NA non-coding upstream 154719 67692160 ~ 67693632 (-)
G738782 NA non-coding upstream 326112 67863553 ~ 67863902 (-)
G738502 LOC106569192 other downstream 108749 67420739 ~ 67421056 (-)
G738472 LOC106569192 other downstream 147828 67381220 ~ 67381977 (-)
G737422 LOC106569284 other downstream 815309 66713693 ~ 66714496 (-)
G737449 LOC106569204 other downstream 969288 66559196 ~ 66560517 (-)
igfbp1 igfbp1 other upstream 1612902 69150343 ~ 69157726 (-)
G740718 LOC106569160 other upstream 1871527 69408968 ~ 69430653 (-)
G741077 foxc1 other upstream 2188333 69725774 ~ 69727431 (-)
G741177 NA other upstream 2244848 69782289 ~ 69783294 (-)
LOC110530971 NA other upstream 2614366 70148848 ~ 70160838 (-)

Expression


Co-expression Network