LOC110530405 (LOC106569187)


Basic Information

Item Value
gene id LOC110530405
gene name LOC106569187
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67537752 ~ 67570811 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613430.2
TGACTGTGGCGACCCCGAGTGCGGATTTTTTTTTAAGCTTCAGTGTTATTCAACGACCTGAAAAAGGAAAACAATCCAGTTGATTTTAAATTAAATAGCGACTGTTGGGCTGTAGTTTTTATTTATTAAcaaaaataaggcctgttttgCCGCTTATTATATTCAAAACTATTTTATTGACAAGTAATTAGCCGTTATGGCTGCCAACAACAATTTACAGAAAGCCATAGATCTGGCCAGCAAGGCAGCCCAGGAGGATAAAGCTCAGAACTACGACGAGGCCCTGCGTCTATACCAACACGCTGTTCAGTACTTCCTACACGTAGTAAAATATGAAGCCCAGGGTGACAAAGCCAAACAGAGCATCAGGGCCAAGTGTGCTGAGTACCTTGACAGAGCAGAGAAGCTCAAAGATTATCTGAAGAAGAAAGAGAAGGCTCCACCCGCCAAGCCTGTGAAGGAGTCCCAAGCTGACgacaaaggAAATGAGAGCGATGAAGGAGACGACCCAGAGAAAAAGAAGTTCCAAAACCAACTTTCAGGCGCCATCGTTATGGAAAAGCCAAACATCAAGTGGAATGATGTTGCCGGTTTAGAGGGAGCCAAAGAGGCACTGAAAGAAGCTGTTATTTTGCCAATTAAATTCCCACATCTTTTCACAGgtaaaAGAACGCCATGGAGGGGGATCCTGCTCTTTGGTCCTCCTGGTACAGGAAAGTCCTATCTGGCTAAAGCTGTGGCCACAGAGGCCAACAACTCCACCTttttctctatctcctcctctgacctgGTGTCCAAGTGGCTGGGAGAGAGTGAAAAgttAGTAAAGAACTTGTTCAGTCTTGCACGGGAGCACAAACCCTCCATCATCTTCATAGATGAGATAGACTCACTGTGCGGCTCCAGGAGTGAGAACGAGAGTGAGGCAGCTCGCCGCATCAAGACAGAGTTTCTGGTTCAGATGCAGGGAGTGGGGAATGACAACGATGGGGTACTGGTATTAGGGGCCACCAACATCCCTTGGACATTGGACTCAGCCATCAGAAGACGGTTTGAGAAGAGGATCTACATCCCCCTGCCAGAGGAACACGCCCGCACCTTCATGTTCAAGCTCCACCTAGGCACCACCCCCACCAGCCTCAACGACTCTGACTTTGTCACCCTGGGAAAGAAGACAGACGGGTACTCGGGGGCCGACATCAGCGTCATTGTCAGAGATGCGCTTATGCAGCCCGTCAGGAAAGTTCAGTCAGCCACTCACTTCAAACGGGTACGAGGGCCATTGAGAGACAACCCCAAAATCCTGGTAGATGACTTTTTGACCCCGTGCTCCCCGGGAGACCCGAACGGCGTCGAGATGACATGGATGGAGGTCCCTGGGGAAAAGCTGTGTGAGCCAGTCGTTTGTATGTCTGACATGCTGAGGTCCCTGTCCAGCACGAAGCCAACTGTCAACGATCATGATTTGGACAAACTGAGAAAATTCACAGATGACTTTGGACAGGAGGGCTAAACgtggcttctttttttttttaccaaaacaaATATTATGATTGTATCAAAGTGTTCATTCTCCCCTTCATGCTCTGTTGGCTCATCAGAAGTGTGCCACATGACTGCTCTACTCATAGAATTACTAGAACCGATATCCCCATTTAAGTCAATTTCTATGGCTCTACTGAGCTTGACTATTGGCCACATAAGGGGTTAAACAAAGGTGGATATTTTCTTAGATGCCCCCCATGTCCAAAGAATTACGGATCACTTCACTGCTGCAAGATGTCTGAGGTAGACCTGATTGGTGGATGGAACGCTGCATGGAAATTAAGAACCTTGGTGTTACATAGGCATAAGTTCTGTGGAATCTCTTTAGCAGCATCTTAGCCCGAATCCTAACTTGAGAACAATGCTCAACTCAAACATTTGCATATGTCATGCTTTGAAGTCAATGGGAGTTTGATTCGAGTTACCGTTACAAGCTTGTTAACCAAATTAAGATGCTGCTTATTGTGCAGAGTGCTTATCTAACTTCCCCAATAAATATCTAAGCTCAGTTTTCAAGTACCACTTGCCATCAATCAAATTGCACCTCACTTGTCATTGTAATCACCCATATACTCTACTTATTTTTGTACACAAGAGAGAACTCATTTTATAGTAGATACTTTATGGAGATGTATGGCTCTTTGGTCTGGAGAGAATGAAACTTACAATGCATGCCATTTGTACTTTCAAAGGCCTTTGTAGTCTCAAGGTTTGGGTAGCTGAAGCACTGCAAATGTATGTCATTCTACATGCACAAGATATTTGTGGGGCTTCGGCTAGGGTTAAAAGAACTACCGACAACAATCGGGGTGGAAACTACTTTGGGACATATTGTGTATATGTACTTTTTTTTCTCAAGAAGGCTACTCTGTGGTTTGTTCATTGTCATTCTGATTAAACTGTCAGGATCACCAAAAGTACTGGACCAGACACCTTATAGACTAGGATTCAGTACTTTTCCCCCTGACCATCCACACCATCCACATTTCCCTGTTACATATTGCTTATCTTCCCAACATGAACTACTGAAAAGCGATGCCTTATGGAGATCCAGTCACACTGTCTAACAGTGCTGAAGAAACAATGGGGCTGATACTTTTGTGAATGGAATTGTAGAGGTAACCTGAAATTGACATTTTAGGCACATAACAGCGTCATGTCCTTTTTTGTTATGGCATTGGTGGAATGCAGCTCGCTTGAACTTACAGTACTACATTTTAAGACGTGGCAATGCGCACCATGTGCCTTCTGAAACAAGTTTAGGTAGTAAGAACATATACATTGTTATTTTGTTTGGTTCATTTAAAAATGTGGAAGTTGATATCCAGAGGCACAGCTATATTGTGTTTTGTCATCGTTGTATTGAAATGTAATATATTTGCACATTTCATGTAAACTCTTATCTAATAGAGATTGTATTCCGAAGACGAATCTTTCAAAGTGTTGGACATCTTTTGTGTTATCTTTTTAACTCACTATAAAAGTGTAGAgaatgatacagtatatatcagtGAGTGGAAAAGTCAATGTATATGGTTTTCTTTCCCATGCATATGTAAATAAAAGTAATATTGAGAACTTGA
>XM_021613429.2
caatGTAACAATTTTATCATCATGAATGACTCACAGGCAGGCGGATTCTCATGCCTTGTTCAAAACAACTAGAAACTCTCAAATCGTCGACTTCCGtcttcagtgcattcaagacaactttTAACttgggaaaaaagtatttgaacggtaaatccaacttggaattccaagtcagaaactttggcatctttctagagctccgacgcACTAAAGTCGCATATCGGAGGATTCCGAGTTCCGAGTAGTTTTGAACGCGTTATGATCATCATTATGATCATTATTTTCTACAGGCAAGTCTCTGACGCGTGTGTGCTGTGAGATAAGCAACAAGGAAATAGCTGTGTAAACGAAACAGTAATATCAAGGCAAGGGGCTCAGACTGTGTTGGTTCTCAGGAGCAACTGACCGTATGAAACTTCCCATGGAGCCAACAAATCTACAGAAAGCTATCGCTGTAGCACAGAAAGCCTCCCAAGAGGACCAGGCTGGGAACTACCAGGAGGCTATCAAATCTTACCAACATGCTGTCAAGTACTTCCTGCACAttgtaaaatgtCAACCACAGGGTAAAGAGGGCAACCAGAAGATCAGGGACAAGTGCAAACTGTACCTGGACAGAGTGGAAGAACTACAGGAGTATCTAGAAAAGAAAGAGGTTGGATCCCAACCAACAATAAACCCCACTGAAGAAGAATACAAGAAAGCCATAGATCTGGCCAGCAAGGCAGCCCAGGAGGATAAAGCTCAGAACTACGACGAGGCCCTGCGTCTATACCAACACGCTGTTCAGTACTTCCTACACGTAGTAAAATATGAAGCCCAGGGTGACAAAGCCAAACAGAGCATCAGGGCCAAGTGTGCTGAGTACCTTGACAGAGCAGAGAAGCTCAAAGATTATCTGAAGAAGAAAGAGAAGGCTCCACCCGCCAAGCCTGTGAAGGAGTCCCAAGCTGACgacaaaggAAATGAGAGCGATGAAGGAGACGACCCAGAGAAAAAGAAGTTCCAAAACCAACTTTCAGGCGCCATCGTTATGGAAAAGCCAAACATCAAGTGGAATGATGTTGCCGGTTTAGAGGGAGCCAAAGAGGCACTGAAAGAAGCTGTTATTTTGCCAATTAAATTCCCACATCTTTTCACAGgtaaaAGAACGCCATGGAGGGGGATCCTGCTCTTTGGTCCTCCTGGTACAGGAAAGTCCTATCTGGCTAAAGCTGTGGCCACAGAGGCCAACAACTCCACCTttttctctatctcctcctctgacctgGTGTCCAAGTGGCTGGGAGAGAGTGAAAAgttAGTAAAGAACTTGTTCAGTCTTGCACGGGAGCACAAACCCTCCATCATCTTCATAGATGAGATAGACTCACTGTGCGGCTCCAGGAGTGAGAACGAGAGTGAGGCAGCTCGCCGCATCAAGACAGAGTTTCTGGTTCAGATGCAGGGAGTGGGGAATGACAACGATGGGGTACTGGTATTAGGGGCCACCAACATCCCTTGGACATTGGACTCAGCCATCAGAAGACGGTTTGAGAAGAGGATCTACATCCCCCTGCCAGAGGAACACGCCCGCACCTTCATGTTCAAGCTCCACCTAGGCACCACCCCCACCAGCCTCAACGACTCTGACTTTGTCACCCTGGGAAAGAAGACAGACGGGTACTCGGGGGCCGACATCAGCGTCATTGTCAGAGATGCGCTTATGCAGCCCGTCAGGAAAGTTCAGTCAGCCACTCACTTCAAACGGGTACGAGGGCCATTGAGAGACAACCCCAAAATCCTGGTAGATGACTTTTTGACCCCGTGCTCCCCGGGAGACCCGAACGGCGTCGAGATGACATGGATGGAGGTCCCTGGGGAAAAGCTGTGTGAGCCAGTCGTTTGTATGTCTGACATGCTGAGGTCCCTGTCCAGCACGAAGCCAACTGTCAACGATCATGATTTGGACAAACTGAGAAAATTCACAGATGACTTTGGACAGGAGGGCTAAACgtggcttctttttttttttaccaaaacaaATATTATGATTGTATCAAAGTGTTCATTCTCCCCTTCATGCTCTGTTGGCTCATCAGAAGTGTGCCACATGACTGCTCTACTCATAGAATTACTAGAACCGATATCCCCATTTAAGTCAATTTCTATGGCTCTACTGAGCTTGACTATTGGCCACATAAGGGGTTAAACAAAGGTGGATATTTTCTTAGATGCCCCCCATGTCCAAAGAATTACGGATCACTTCACTGCTGCAAGATGTCTGAGGTAGACCTGATTGGTGGATGGAACGCTGCATGGAAATTAAGAACCTTGGTGTTACATAGGCATAAGTTCTGTGGAATCTCTTTAGCAGCATCTTAGCCCGAATCCTAACTTGAGAACAATGCTCAACTCAAACATTTGCATATGTCATGCTTTGAAGTCAATGGGAGTTTGATTCGAGTTACCGTTACAAGCTTGTTAACCAAATTAAGATGCTGCTTATTGTGCAGAGTGCTTATCTAACTTCCCCAATAAATATCTAAGCTCAGTTTTCAAGTACCACTTGCCATCAATCAAATTGCACCTCACTTGTCATTGTAATCACCCATATACTCTACTTATTTTTGTACACAAGAGAGAACTCATTTTATAGTAGATACTTTATGGAGATGTATGGCTCTTTGGTCTGGAGAGAATGAAACTTACAATGCATGCCATTTGTACTTTCAAAGGCCTTTGTAGTCTCAAGGTTTGGGTAGCTGAAGCACTGCAAATGTATGTCATTCTACATGCACAAGATATTTGTGGGGCTTCGGCTAGGGTTAAAAGAACTACCGACAACAATCGGGGTGGAAACTACTTTGGGACATATTGTGTATATGTACTTTTTTTTCTCAAGAAGGCTACTCTGTGGTTTGTTCATTGTCATTCTGATTAAACTGTCAGGATCACCAAAAGTACTGGACCAGACACCTTATAGACTAGGATTCAGTACTTTTCCCCCTGACCATCCACACCATCCACATTTCCCTGTTACATATTGCTTATCTTCCCAACATGAACTACTGAAAAGCGATGCCTTATGGAGATCCAGTCACACTGTCTAACAGTGCTGAAGAAACAATGGGGCTGATACTTTTGTGAATGGAATTGTAGAGGTAACCTGAAATTGACATTTTAGGCACATAACAGCGTCATGTCCTTTTTTGTTATGGCATTGGTGGAATGCAGCTCGCTTGAACTTACAGTACTACATTTTAAGACGTGGCAATGCGCACCATGTGCCTTCTGAAACAAGTTTAGGTAGTAAGAACATATACATTGTTATTTTGTTTGGTTCATTTAAAAATGTGGAAGTTGATATCCAGAGGCACAGCTATATTGTGTTTTGTCATCGTTGTATTGAAATGTAATATATTTGCACATTTCATGTAAACTCTTATCTAATAGAGATTGTATTCCGAAGACGAATCTTTCAAAGTGTTGGACATCTTTTGTGTTATCTTTTTAACTCACTATAAAAGTGTAGAgaatgatacagtatatatcagtGAGTGGAAAAGTCAATGTATATGGTTTTCTTTCCCATGCATATGTAAATAAAAGTAATATTGAGAACTTGA

Function

NR:

description
vacuolar protein sorting-associated protein 4B-like isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K12196 VPS4; vacuolar protein-sorting-associated protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613430.2 False 3128 mRNA 0.43 11 67537752 67562514
XM_021613429.2 True 3608 mRNA 0.44 14 67537752 67570811

Neighbor

gene id symbol gene type direction distance location
kdsr LOC106569188 coding downstream 311 67529805 ~ 67537441 (-)
LOC110530404 LOC106569189 coding downstream 8957 67477992 ~ 67528795 (-)
LOC110530968 LOC106569194 coding downstream 361584 67055158 ~ 67176168 (-)
gs02 gs02 coding downstream 735973 66798543 ~ 66801779 (-)
elovl1a LOC106569200 coding downstream 854805 66672460 ~ 66682947 (-)
LOC110530412 LOC106569180 coding upstream 198938 67769749 ~ 67818199 (-)
LOC110530414 LOC106569178 coding upstream 370504 67941315 ~ 68125947 (-)
LOC110530416 LOC106569176 coding upstream 592557 68163368 ~ 68180025 (-)
LOC110530419 LOC106569174 coding upstream 686122 68256933 ~ 68269843 (-)
LOC118965617 NA coding upstream 709665 68280470 ~ 68283072 (-)
G738562 NA non-coding downstream 43231 67494015 ~ 67494521 (-)
G738507 NA non-coding downstream 107715 67429266 ~ 67430037 (-)
G738508 NA non-coding downstream 108774 67428224 ~ 67428978 (-)
G738506 NA non-coding downstream 110430 67426966 ~ 67427322 (-)
G738504 LOC106569192 non-coding downstream 112413 67423863 ~ 67425339 (-)
G738587 NA non-coding upstream 5509 67576320 ~ 67576541 (-)
G738616 NA non-coding upstream 102201 67673012 ~ 67673616 (-)
G738670 LOC106569186 non-coding upstream 112422 67683233 ~ 67683955 (-)
G738613 NA non-coding upstream 121349 67692160 ~ 67693632 (-)
G738782 NA non-coding upstream 292742 67863553 ~ 67863902 (-)
G738502 LOC106569192 other downstream 116696 67420739 ~ 67421056 (-)
G738472 LOC106569192 other downstream 155775 67381220 ~ 67381977 (-)
G737422 LOC106569284 other downstream 823256 66713693 ~ 66714496 (-)
G737449 LOC106569204 other downstream 977235 66559196 ~ 66560517 (-)
igfbp1 igfbp1 other upstream 1579532 69150343 ~ 69157726 (-)
G740718 LOC106569160 other upstream 1838157 69408968 ~ 69430653 (-)
G741077 foxc1 other upstream 2154963 69725774 ~ 69727431 (-)
G741177 NA other upstream 2211478 69782289 ~ 69783294 (-)
LOC110530971 NA other upstream 2580996 70148848 ~ 70160838 (-)

Expression


Co-expression Network