LOC110530423 (LOC106569170)


Basic Information

Item Value
gene id LOC110530423
gene name LOC106569170
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 68834340 ~ 68856034 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613480.2
TGAAAGAGGGTGGAGTACTAGACGAGGAATGCGTCCCGTCGTCGAGGTAGCCAATTGAGTAATCGCGGGCGGGGTACTTTTTCATAAACGAAACCGTCATTCCGATACCTGCAATGGAAGACTCATACGGACACAATTAGGTTACTGTTGATTGGTGTAAGGATATTCCACCCACTAATCCTCGCCCTTGACAGAAACACTTATACTTCTTGTTCCTGCGTGTGGTTTCGTCACTATAGTCTTGATGTTTCGAATGGTAGTAACAAAAATGGCACGGAACTTAAATGTCAATTTATGCATCTTTTTGATCATCTCATGTGTGGACTCCTGCTTTATCCCCGACTCCATACAAGCAGCAGTACCTCAGACAGTACCAGTTGGGCATGTTATTTCAAAAGTTGATGTCGACAACTGTGACACCAAGACCTTGCATTTGACCTCTTGTGACCCGGACTTCACAGTACAGGCAGATGGAACTATAGTAACAGTCCACATCACTATGGTACCAGCCAATGGCAGGACATTCTCAGTGCAGTTTCAGGACCCCAATGGTCAGAAGAAAAACATGGATGTTTACCTTGTCCAGAACTCTAGAAAAGTATTGAAAGATGGTCTACTAAAGCGCTCCAAAAGACGTTGGAGCCCTCTGCCCTTCAACATCATAGAAAACGACGCCCCTCCATTTCCAAAGGAAGTTGATCTGGTTGCATCTGATTCTTCTGCCGCATACAACGTGTACTACACCCTCAGTGGGCCTGGTGTGACAGAGGACCCTGTGGGTGTGTTTAGTGTGGTAAAGGAAACTGGGATGCTGAAGGTCCACAGAGCTGTTGACCGCGAGGTTACCCCTCAGTTTATATTTCAAGCCAGAGTGTTTGACAGATACACCAACCAGGAGACAGACTTACCATTACCCATCACAGTGAATGTAGAAGATGTAAATGACAATGCACCAACTTTCACTGGACAACTGCAGTTTACTGTGCTGGAACAAAGCAAAACAGGTACCGTTGTGGGGAAGGTGAATGCCATAGACAAAGACGAGCCTGGTACAGACCACACTAAGATCAGGTACTCCCTCCTCTCTGGGACCAACCTGTTCTACATCAACCCAGAGACAGGAGTCATCAGCACCAAAACAGACACTCTTGACAGAGAGGTGAACGACAAACATTTTGTGACAGTGGACATCAGAGACATGAATGGCGCTCTGAATGGTCTATCAAACACGGCTACAGCCACAATAGTTGTGGGAGATATCAACGACAACCCTCCCACTTTTAAAAAGACATCTTATAATGTGAGTGTTATGGAGAACCAAGAGAAAGGCCTCATCCTCAGAATCCCTATTGAAGACAAGGACTTAATTAACACACCAAACTGGAACTCTGAGTTCATCATCACCAAGGGGAACGAAAATGGGAACTTCAGGATGGAAAGAGACCCAAAAACAAATGAAGGACTAATTTACCTAACAAAGCCTCTAGACTACGAGAAGACCAAGAACCTAAAGCTGGATGTGATGGCCCGTAACCAGGCTGAGCTGAGTGGGACCAATGCCAAGTGGGTGTCCATCCCTGTGGATGTCACAGTGGGGGACGTGGACGAGGGACCAGAGTTCACTGCCCCCATCGTACGATTTACTGTCCAGGAGAATACTCCAAACGACACCCTGATCGGAACGTACACTGCTGTAGACCCAGAGACCAAGAGCAGCGCTGGCATCAAGTATTACAAGGTCTCAGACCCAGCTTCATGGATCAATGTCGATGAAAGCACTGGACAGCTGAAGATCGCCAACACAATCGACAGGGAGTCCCACTTCGTAGTGGATGGTGTTTACAACGTCACTATGAAAGCTGTGGATGCCAGTCGGAAGACAGGTACAGGGACGGTGATTATTCAAGTGGAAGACATGAACGACCACGTCCCAGACATCCTCTCTAAAGACCTGGTGTTGTGTgagaaggatgggggagagatgggctCTGTGTTGGTGGTAGCAGAAGACAAGGACCAAGCTCCCTTCTCCGCCCCCTTCAGCTTCAAACTGGGAGAGAAGCATGATGACAACTGGGCTGTGAAGCCACTTAACAGCACTGCAGTGATGTTGGCGCAAACTAAGGAGCTCCCCACCGGCCTATACACTGTCCCCCTGATGGTAGTGGACCTGCAGGGCTTTGGAAGTACCCAGACTGTGACGGTCCGGATCTGCCGCTGCAGGAACGGAGCGTGTCTGGCCCAACAGAACTCCACATCTTTGGGGGTGTGGGGCATCCTGGCCATGTTGCTCGGTCTGGCTTTGCTACTTCTACTCTGTATCCTTTGTGCATTCGTGTGTGTGACGAAGAATGAGAAAATGGAGCTGGAGGATATGGGAGACAGTGGTGGTATCCTGCTGACGTCTAACATTGAGGCCCTAGGGGATGCAGTGGATTCAAATCTCATCATTGTTCCAAAGTCTGGGATTGACCGTTCAGTGAAGGGATCCGTGATTGACATGGGGTGGGCTGGAGCTAAGGACTTGGGTAAGATGGGAGGAGACCTGGGCACTCAACAGCAGTCCGGCAGCAGCGTCATTGTGACCGATATGCAGAACGGCTTCTCTGACCGATACAACGGCAGTCAATACGGTGGACAAAATGGCGGTGGACAATATGGTGTAGATCAATATGGTGGCGGACAATATGCCAGTGGCAATATGACTTTTGACAACACACGTTTCATGAAGATCAACTGGCAAACCAACGGACTGTTTCTACAACAGAAGTTGGCTTACCTAGGGACGGAAGAGGAGGGACGGTACGCCGATGACATCATCCACGCGTACGGCTTCGAGGGGGTGGGGTCTTCAGCTGGCTCGGTGGGCTGCTGCAGTGACCAAGTCAACCAGGAAGACCTGGACTTCCTGAACACACTGGGGCCAAAGTTCAAGGTGTTAGCTGAGGTCTGCACTAACAAATGAACCAGGAAGATCTATTGCAATATTGTTTTTACTATAGAAAGTGTTCTctcatgtttgttttttgttgatAATTATGAATTATCAGAGGGTTGGCATGCTATTATTATCAAGGGTGATACAAAACATTGAGTCAGTCATCACACTGAATTGCTCAAACTGTTTGTTGGTTAGAGCCTTTTTGCACTGGAAAGTACTATGTATTGTAAATAGTGTACATTTAGTGATTTAAGTGCCAAAGataagattttttttgttgtaaaataTGGTAAAAGTTTCAGTGTTGTAGAATCAAATGTTTGTTTATGAGATGCTGTAAAAACAGTACTTGAATGTTAGATAAGATGAGATTTTTCTAATTACCTATGAACTGAATGGGGTACAAACATTACTAAATAAAGTCTATATTTCTCTTTCAATGTTGGATAACCTGAATAATTAAACCTTGCACTTATTGTCCTAGCTATATTTTGTACCATTGTACGTTCTGTACAAGTCAACACATGATAATGAAATAAGTAGAGTGAATATGACCATCTAAAGCAGACTGTATGTAATCCAATCATTTTTTCAAGACTGTTTGTGTGAGATTCTAAATGGCATTTCTCATCACTTTTTAGCCATCAAAGAGTAAAACTGCCTTGTCGATTAGGCTACA
>XM_021613478.2
ACTGAAAGAGGGTGGAGTACTAGACGAGGAATGCGTCCCGTCGTCGAGGTAGCCAATTGAGTAATCGCGGGCGGGGTACTTTTTCATAAACGAAACCGTCATTCCGATACCTGCAATGGAAGACTCATACGGACACAATTAGGTTACTGTTGATTGGTGTAAGGATATTCCACCCACTAATCCTCGCCCTTGACAGAAACACTTATACTTCTTGTTCCTGCGTGTGGTTTCGTCACTATAGTCTTGATGTTTCGAATGGTAGTAACAAAAATGGCACGGAACTTAAATGTCAATTTATGCATCTTTTTGATCATCTCATGTGTGGACTCCTGCTTTATCCCCGACTCCATACAAGCAGCAGTACCTCAGACAGTACCAGTTGGGCATGTTATTTCAAAAGTTGATGTCGACAACTGTGACACCAAGACCTTGCATTTGACCTCTTGTGACCCGGACTTCACAGTACAGGCAGATGGAACTATAGTAACAGTCCACATCACTATGGTACCAGCCAATGGCAGGACATTCTCAGTGCAGTTTCAGGACCCCAATGGTCAGAAGAAAAACATGGATGTTTACCTTGTCCAGAACTCTAGAAAAGTAAGGTGGATTCCACATTGGCTTAGAGTAAAAGATGTTGAAGATGTTTACCTTGTCCAGAACTCTAGAAAAGTATTGAAAGATGGTCTACTAAAGCGCTCCAAAAGACGTTGGAGCCCTCTGCCCTTCAACATCATAGAAAACGACGCCCCTCCATTTCCAAAGGAAGTTGATCTGGTTGCATCTGATTCTTCTGCCGCATACAACGTGTACTACACCCTCAGTGGGCCTGGTGTGACAGAGGACCCTGTGGGTGTGTTTAGTGTGGTAAAGGAAACTGGGATGCTGAAGGTCCACAGAGCTGTTGACCGCGAGGTTACCCCTCAGTTTATATTTCAAGCCAGAGTGTTTGACAGATACACCAACCAGGAGACAGACTTACCATTACCCATCACAGTGAATGTAGAAGATGTAAATGACAATGCACCAACTTTCACTGGACAACTGCAGTTTACTGTGCTGGAACAAAGCAAAACAGGTACCGTTGTGGGGAAGGTGAATGCCATAGACAAAGACGAGCCTGGTACAGACCACACTAAGATCAGGTACTCCCTCCTCTCTGGGACCAACCTGTTCTACATCAACCCAGAGACAGGAGTCATCAGCACCAAAACAGACACTCTTGACAGAGAGGTGAACGACAAACATTTTGTGACAGTGGACATCAGAGACATGAATGGCGCTCTGAATGGTCTATCAAACACGGCTACAGCCACAATAGTTGTGGGAGATATCAACGACAACCCTCCCACTTTTAAAAAGACATCTTATAATGTGAGTGTTATGGAGAACCAAGAGAAAGGCCTCATCCTCAGAATCCCTATTGAAGACAAGGACTTAATTAACACACCAAACTGGAACTCTGAGTTCATCATCACCAAGGGGAACGAAAATGGGAACTTCAGGATGGAAAGAGACCCAAAAACAAATGAAGGACTAATTTACCTAACAAAGCCTCTAGACTACGAGAAGACCAAGAACCTAAAGCTGGATGTGATGGCCCGTAACCAGGCTGAGCTGAGTGGGACCAATGCCAAGTGGGTGTCCATCCCTGTGGATGTCACAGTGGGGGACGTGGACGAGGGACCAGAGTTCACTGCCCCCATCGTACGATTTACTGTCCAGGAGAATACTCCAAACGACACCCTGATCGGAACGTACACTGCTGTAGACCCAGAGACCAAGAGCAGCGCTGGCATCAAGTATTACAAGGTCTCAGACCCAGCTTCATGGATCAATGTCGATGAAAGCACTGGACAGCTGAAGATCGCCAACACAATCGACAGGGAGTCCCACTTCGTAGTGGATGGTGTTTACAACGTCACTATGAAAGCTGTGGATGCCAGTCGGAAGACAGGTACAGGGACGGTGATTATTCAAGTGGAAGACATGAACGACCACGTCCCAGACATCCTCTCTAAAGACCTGGTGTTGTGTgagaaggatgggggagagatgggctCTGTGTTGGTGGTAGCAGAAGACAAGGACCAAGCTCCCTTCTCCGCCCCCTTCAGCTTCAAACTGGGAGAGAAGCATGATGACAACTGGGCTGTGAAGCCACTTAACAGCACTGCAGTGATGTTGGCGCAAACTAAGGAGCTCCCCACCGGCCTATACACTGTCCCCCTGATGGTAGTGGACCTGCAGGGCTTTGGAAGTACCCAGACTGTGACGGTCCGGATCTGCCGCTGCAGGAACGGAGCGTGTCTGGCCCAACAGAACTCCACATCTTTGGGGGTGTGGGGCATCCTGGCCATGTTGCTCGGTCTGGCTTTGCTACTTCTACTCTGTATCCTTTGTGCATTCGTGTGTGTGACGAAGAATGAGAAAATGGAGCTGGAGGATATGGGAGACAGTGGTGGTATCCTGCTGACGTCTAACATTGAGGCCCTAGGGGATGCAGTGGATTCAAATCTCATCATTGTTCCAAAGTCTGGGATTGACCGTTCAGTGAAGGGATCCGTGATTGACATGGGGTGGGCTGGAGCTAAGGACTTGGGTAAGATGGGAGGAGACCTGGGCACTCAACAGCAGTCCGGCAGCAGCGTCATTGTGACCGATATGCAGAACGGCTTCTCTGACCGATACAACGGCAGTCAATACGGTGGACAAAATGGCGGTGGACAATATGGTGTAGATCAATATGGTGGCGGACAATATGCCAGTGGCAATATGACTTTTGACAACACACGTTTCATGAAGATCAACTGGCAAACCAACGGACTGTTTCTACAACAGAAGTTGGCTTACCTAGGGACGGAAGAGGAGGGACGGTACGCCGATGACATCATCCACGCGTACGGCTTCGAGGGGGTGGGGTCTTCAGCTGGCTCGGTGGGCTGCTGCAGTGACCAAGTCAACCAGGAAGACCTGGACTTCCTGAACACACTGGGGCCAAAGTTCAAGGTGTTAGCTGAGGTCTGCACTAACAAATGAACCAGGAAGATCTATTGCAATATTGTTTTTACTATAGAAAGTGTTCTctcatgtttgttttttgttgatAATTATGAATTATCAGAGGGTTGGCATGCTATTATTATCAAGGGTGATACAAAACATTGAGTCAGTCATCACACTGAATTGCTCAAACTGTTTGTTGGTTAGAGCCTTTTTGCACTGGAAAGTACTATGTATTGTAAATAGTGTACATTTAGTGATTTAAGTGCCAAAGataagattttttttgttgtaaaataTGGTAAAAGTTTCAGTGTTGTAGAATCAAATGTTTGTTTATGAGATGCTGTAAAAACAGTACTTGAATGTTAGATAAGATGAGATTTTTCTAATTACCTATGAACTGAATGGGGTACAAACATTACTAAATAAAGTCTATATTTCTCTTTCAATGTTGGATAACCTGAATAATTAAACCTTGCACTTATTGTCCTAGCTATATTTTGTACCATTGTACGTTCTGTACAAGTCAACACATGATAATGAAATAAGTAGAGTGAATATGACCATCTAAAGCAGACTGTATGTAATCCAATCATTTTTTCAAGACTGTTTGTGTGAGATTCTAAATGGCATTTCTCATCACTTTTTAGCCATCAAAGAGTAAAACTGCCTTGTCGATTAGGCTACA

Function

NR:

description
desmocollin-2-like isoform X1

GO: NA

KEGG:

id description
K07601 DSC2; desmocollin 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613480.2 False 3620 mRNA 0.46 16 68834340 68856032
XM_021613478.2 True 3694 mRNA 0.46 16 68834340 68856034

Neighbor

gene id symbol gene type direction distance location
LOC110530422 LOC106569171 coding downstream 187594 68542258 ~ 68646746 (-)
LOC110530421 LOC106569173 coding downstream 523303 68303741 ~ 68311037 (-)
LOC118965617 NA coding downstream 551268 68280470 ~ 68283072 (-)
LOC110530419 LOC106569174 coding downstream 564497 68256933 ~ 68269843 (-)
LOC110530416 LOC106569176 coding downstream 654315 68163368 ~ 68180025 (-)
LOC110530425 tbb2a coding upstream 45685 68901719 ~ 68908188 (-)
LOC110530426 LOC106569167 coding upstream 52961 68908995 ~ 68995260 (-)
igfbp1 igfbp1 coding upstream 295276 69150343 ~ 69157726 (-)
LOC110530970 LOC106569164 coding upstream 327133 69114482 ~ 69240965 (-)
si:ch73-40a17.3 mep1b coding upstream 578508 69434542 ~ 69450423 (-)
G740372 NA non-coding downstream 4835 68829266 ~ 68829505 (-)
G740369 NA non-coding downstream 6730 68827134 ~ 68827610 (-)
G740103 NA non-coding downstream 397616 68436407 ~ 68436724 (-)
G739207 NA non-coding downstream 608198 68225934 ~ 68226142 (-)
G740389 NA non-coding upstream 2305 68858339 ~ 68858755 (-)
G740400 NA non-coding upstream 13592 68869626 ~ 68869959 (-)
G740363 LOC106569169 non-coding upstream 40174 68896208 ~ 68898424 (-)
G740395 NA non-coding upstream 52543 68908577 ~ 68908882 (-)
G740436 NA non-coding upstream 149739 69005773 ~ 69005990 (-)
G738504 LOC106569192 other downstream 1409001 67423863 ~ 67425339 (-)
G738502 LOC106569192 other downstream 1413284 67420739 ~ 67421056 (-)
G738472 LOC106569192 other downstream 1452363 67381220 ~ 67381977 (-)
G737422 LOC106569284 other downstream 2119844 66713693 ~ 66714496 (-)
G737449 LOC106569204 other downstream 2273823 66559196 ~ 66560517 (-)
G740718 LOC106569160 other upstream 552934 69408968 ~ 69430653 (-)
G741077 foxc1 other upstream 869740 69725774 ~ 69727431 (-)
G741177 NA other upstream 926255 69782289 ~ 69783294 (-)
LOC110530971 NA other upstream 1295773 70148848 ~ 70160838 (-)

Expression


Co-expression Network