LOC110530425 (tbb2a)


Basic Information

Item Value
gene id LOC110530425
gene name tbb2a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 68901719 ~ 68908188 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613483.2
ATCGGTGTTAGCTGAGACAAAAGGCTGCTGTCTGCTTGCACCCACAAGGCATCATCATGAGGGAGATTGTTCATATCCAGGCCGGGCAATGTGGAAACCAGATTGGTGCCAAATTCTGGGAGGTCATAAGTGACGAACACGGCATCGACCCCACCGGAAGTTACCAAGGTGACAGTGACCTGCAGCTGGAGAGGATAAACGTGTACTACAATGAAGCATCGGTGGGCCCTGTGGCAGGGCAGGGGAAATGAGGACAGCAGAAGGTACCtgccaatctctctccctccctccctccatccctctctggcAGGGCAGGGGAAATGAGGACAGCAGCAGGTAACAAGTTTGTCCCCCGGGCCATCCTGGTGGATCTGGAGCCAGGCACCATGGATTCTGTACGCTCCGGGCCCTTCGGCCAGCTCTTCAGACCAGACAACTTTGTCTTTGGTCAGAGTGGAGCTGGTAACAACTGGGCTAAAGGCCACTACACAGAGGGAGCAGAGCTGGTAGACTCTGTCCTGGATGTAGTCAGGAAGGAGTCTGAGAACTGTGACTGCCTCCAGGGCTTCCAGCTCACCCACTCCCTGGGAGGGGGCACCGGCTCTGGCATGGGCACCCTGCTCATCAGCAAGATCCGCGAGGAGTACCCTGACCGCATCATGAACACCTTCAGTGTCATGCCCTCACCCAAGGTGTCCGACACGGTGGTGGAGCCCTACAACGCCACCCTGTCAGTCCACCAGCTGGTGGAGAACACTGATGAGACCTTCAGCATCGACAACGAGGCTCTCTATGACATCTGCTTTCGAACCCTCAAACTCACCACACCCACCTACGGAGACCTCAACCACTTGGTGTCGGCCACCATGAGCGGGGTCACCACCTGCTTGCGCTTCCCCGGTCAGCTCAATGCCGACCTCCGCAAACTAGCCGTCAACATGGTGCCCTTCCCCCGCCTCCACTTCTTCATGCCCGGCTTTGCCCCTCTGACCAGCAGGGGGAGCCAGCAGTACCGTGCTCTCTCCGTGCCCGAACTGACCCAGCAGATGTTTGACGCCAAAAACATGATGGCCGCCTGCGACCCTCGCCACGGCCGCTACCTCACTGTTGCCGCCATCTTCCGCGGGCGCATGTCCATGAAGGAGGTAGACGAGCAGATGTTGAGCGTGCAGAACAAGAACAGCAGCTACTTCGTAGAGTGGATCCCCAACAACGTGAAGACGGCCGTCTGCGACATCCCGCCCCGTGGCCTTAAGATGTCCGCCACCTTCATCGGGAACAGCACGGCCATCCAGGAGCTGTTTAGAAGGATCTCTGAGCAGTTCACTGCCATGTTCCGCCGTAAGGCCTTCCTTCACTGGTACACCGGAGAGGGTATGGATGAGATGGAGTTCACTGAGGCTGAGAGCAACATGAATGATCTGGTGTCTGAGTACCAGCAGTACCAGGACGCCACTGCTGACGAAGTGGGCGAGTACGAGGAAGACGAGTTGGAGGATGCGGATCAGGATGTCCAGCAGCATCATGATGTCCGCCACTGAAGGATGCCAGGTAGAAGCAGCACAGCAGTCTGTATGTTATATCCACCTGTCACTTTAAATGATCAATAGGTATGGAAGGATAGAGGCGCAGAATGAGTTATTGTAGCTGTTTAGCCTAAAGACTACTACTATTGCATTTCATTGTTCTTCAAATATGTCTCGAAGACCATAAGTGTAACATAACAATTATGTGAGTATTATAAATGTCATTGGTTTTCCAATTCATGCTGTGTCAATGTCAATAAAAACAACATCGTTACACTATCGAAACCGAGTTTTGTAACACTTACCTCAGAATGCATTTTCTGTCGCAAAATAAAATGGTCCTGTCCTATGAA
>XM_021613482.2
AGCTCATCACTCGCCCCAGTAATGTAAAAACTGCTGAGAGGCGACACATGCAAGGGTAGCAAAGAGGTTGAGGACATCGGTGTTAGCTGAGACAAAAGGCTGCTGTCTGCTTGCACCCACAAGGCATCATCATGAGGGAGATTGTTCATATCCAGGCCGGGCAATGTGGAAACCAGATTGGTGCCAAATTCTGGGAGGTCATAAGTGACGAACACGGCATCGACCCCACCGGAAGTTACCAAGGTGACAGTGACCTGCAGCTGGAGAGGATAAACGTGTACTACAATGAAGCATCGGGTAACAAGTTTGTCCCCCGGGCCATCCTGGTGGATCTGGAGCCAGGCACCATGGATTCTGTACGCTCCGGGCCCTTCGGCCAGCTCTTCAGACCAGACAACTTTGTCTTTGGTCAGAGTGGAGCTGGTAACAACTGGGCTAAAGGCCACTACACAGAGGGAGCAGAGCTGGTAGACTCTGTCCTGGATGTAGTCAGGAAGGAGTCTGAGAACTGTGACTGCCTCCAGGGCTTCCAGCTCACCCACTCCCTGGGAGGGGGCACCGGCTCTGGCATGGGCACCCTGCTCATCAGCAAGATCCGCGAGGAGTACCCTGACCGCATCATGAACACCTTCAGTGTCATGCCCTCACCCAAGGTGTCCGACACGGTGGTGGAGCCCTACAACGCCACCCTGTCAGTCCACCAGCTGGTGGAGAACACTGATGAGACCTTCAGCATCGACAACGAGGCTCTCTATGACATCTGCTTTCGAACCCTCAAACTCACCACACCCACCTACGGAGACCTCAACCACTTGGTGTCGGCCACCATGAGCGGGGTCACCACCTGCTTGCGCTTCCCCGGTCAGCTCAATGCCGACCTCCGCAAACTAGCCGTCAACATGGTGCCCTTCCCCCGCCTCCACTTCTTCATGCCCGGCTTTGCCCCTCTGACCAGCAGGGGGAGCCAGCAGTACCGTGCTCTCTCCGTGCCCGAACTGACCCAGCAGATGTTTGACGCCAAAAACATGATGGCCGCCTGCGACCCTCGCCACGGCCGCTACCTCACTGTTGCCGCCATCTTCCGCGGGCGCATGTCCATGAAGGAGGTAGACGAGCAGATGTTGAGCGTGCAGAACAAGAACAGCAGCTACTTCGTAGAGTGGATCCCCAACAACGTGAAGACGGCCGTCTGCGACATCCCGCCCCGTGGCCTTAAGATGTCCGCCACCTTCATCGGGAACAGCACGGCCATCCAGGAGCTGTTTAGAAGGATCTCTGAGCAGTTCACTGCCATGTTCCGCCGTAAGGCCTTCCTTCACTGGTACACCGGAGAGGGTATGGATGAGATGGAGTTCACTGAGGCTGAGAGCAACATGAATGATCTGGTGTCTGAGTACCAGCAGTACCAGGACGCCACTGCTGACGAAGTGGGCGAGTACGAGGAAGACGAGTTGGAGGATGCGGATCAGGATGTCCAGCAGCATCATGATGTCCGCCACTGAAGGATGCCAGGTAGAAGCAGCACAGCAGTCTGTATGTTATATCCACCTGTCACTTTAAATGATCAATAGGTATGGAAGGATAGAGGCGCAGAATGAGTTATTGTAGCTGTTTAGCCTAAAGACTACTACTATTGCATTTCATTGTTCTTCAAATATGTCTCGAAGACCATAAGTGTAACATAACAATTATGTGAGTATTATAAATGTCATTGGTTTTCCAATTCATGCTGTGTCAATGTCAATAAAAACAACATCGTTACACTATCGAAACCGAGTTTTGTAACACTTACCTCAGAATGCATTTTCTGTCGCAAAATAAAATGGTCCTGTCCTATGAA

Function

NR:

description
Tubulin beta-2A chain

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07375 TUBB; tubulin beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613483.2 False 1879 mRNA 0.54 5 68901719 68908113
XM_021613482.2 True 1840 mRNA 0.53 4 68901719 68908188

Neighbor

gene id symbol gene type direction distance location
LOC110530423 LOC106569170 coding downstream 45685 68834340 ~ 68856034 (-)
LOC110530422 LOC106569171 coding downstream 254973 68542258 ~ 68646746 (-)
LOC110530421 LOC106569173 coding downstream 590682 68303741 ~ 68311037 (-)
LOC118965617 NA coding downstream 618647 68280470 ~ 68283072 (-)
LOC110530419 LOC106569174 coding downstream 631876 68256933 ~ 68269843 (-)
LOC110530426 LOC106569167 coding upstream 807 68908995 ~ 68995260 (-)
igfbp1 igfbp1 coding upstream 243122 69150343 ~ 69157726 (-)
LOC110530970 LOC106569164 coding upstream 274979 69114482 ~ 69240965 (-)
si:ch73-40a17.3 mep1b coding upstream 526354 69434542 ~ 69450423 (-)
LOC118965618 rnf138 coding upstream 553732 69461920 ~ 69474389 (-)
G740363 LOC106569169 non-coding downstream 3295 68896208 ~ 68898424 (-)
G740400 NA non-coding downstream 31760 68869626 ~ 68869959 (-)
G740389 NA non-coding downstream 42964 68858339 ~ 68858755 (-)
G740372 NA non-coding downstream 72214 68829266 ~ 68829505 (-)
G740369 NA non-coding downstream 74109 68827134 ~ 68827610 (-)
G740395 NA non-coding upstream 389 68908577 ~ 68908882 (-)
G740436 NA non-coding upstream 97585 69005773 ~ 69005990 (-)
G740437 NA non-coding upstream 97817 69006005 ~ 69006231 (-)
G740438 NA non-coding upstream 98145 69006333 ~ 69006607 (-)
G740448 LOC106599719 non-coding upstream 115830 69024018 ~ 69024872 (-)
G738504 LOC106569192 other downstream 1476380 67423863 ~ 67425339 (-)
G738502 LOC106569192 other downstream 1480663 67420739 ~ 67421056 (-)
G738472 LOC106569192 other downstream 1519742 67381220 ~ 67381977 (-)
G737422 LOC106569284 other downstream 2187223 66713693 ~ 66714496 (-)
G737449 LOC106569204 other downstream 2341202 66559196 ~ 66560517 (-)
G740718 LOC106569160 other upstream 500780 69408968 ~ 69430653 (-)
G741077 foxc1 other upstream 817586 69725774 ~ 69727431 (-)
G741177 NA other upstream 874101 69782289 ~ 69783294 (-)
LOC110530971 NA other upstream 1243619 70148848 ~ 70160838 (-)

Expression


Co-expression Network