LOC110530971


Basic Information

Item Value
gene id LOC110530971
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70148848 ~ 70160838 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986070.1
CCTACTCACTTCCTCACCATCAGCATGAGAAAAGATCAAGGAACCATAGAAGTGGACAAGTCAATAGGCATCTCATCAGATTCTATTCTATTTATCTGAGAGGACCAGCAGGTGTGATAGTAGAATGTCAGTCCTCTGCCTGAGAGAGATCTGCCGCAAGATGAGGAGCATCAAACAGACAGAGCTGGAGCCCCTGGTGAGACGAGCCAATCAGATTAGAACTGAAGTCACACAGGGAGGGAGGAAGCCCTGTAAGGATGTGATAGATGTCAGCTGGGGAGACAAACACAGAGGAGGGGTCCAACCCTTGACCTTCGTCCGACAGGTTCTTGCAGCCTGCCTCTACCCTCAGTTGATCCACAGTTACAAACTGCCAGGGGACGTTAGACAGAGGGTCCAAAGCCTGCTGGGAGCATGTGATGGGGGGAGTGTAGGCTCATACACACCCACTGGTGGTATCTCTTATATACAGTGCAGTGTGTCCAACTTCATCTCTCGACGAGATGGTGGTGTACCATCGTCCCCCGAGAATATCTTCATGACCTCTGGCTCTCAAAGGTCAATAATGCAAGTGTTGAAGATGCTGGCTGACTTCCACAATCAGGCCTCACTTCCGACAGGTGTGCTGACGGCTGTGCCCACCTACTCTTCCTTCAAAATGATGTTGCAAAGGCTCGGGGCAGTCATTGCTCCCTACTACCTAGATGAGGAGCAGGGTTGGGCAATGGAGGTGGAGGAGCTACGCAGAGCACTACAGGCCTCTAAGGATGTCTGCAACACAGTTGCCCTGTATGTCATCAACCCGGGGAATCCTACAGGTCATGTTCAGAGCAGGAAGTGTATTGAAAAGGTGATCCGATTCGCTGCTGAGGAGAGGCTCTTCCTCATGGCTGATGAGGTGTATCAGGAAAGTGTGTTTGGGGAGGGCAGTGAGTTTGTCTCCTATAAGAAGGTTCTGTCTGAAATggggcctcctctctctcacacagtggaGCTGGCCTCTTTCCACTCAGCATCCAAAGGCTTCATGGGCGAGTGTGGGCTACGCGGAGGGTACGTGGAGCTGGTGAACCTTGACCCCGCCGTCATGAAGTACGCCTACACCATCTTTTCCACTGACATCTGTGCCCCTGTGACTGGTCAGCTAGCCCTGGAGCTCATGGCTAACCCTCCCAGGCCAGGGGACCCCTCATACCCGGTCTACGCCCAGGAGACCCAGTCTATCCGGGCCATGCTGGTCCATAACATGAACTGGGTCCCAGAGTTTCTGAACAATATCCCAGGGATCAGCTGTCAGCCGATGATGGGAGGAGCTTTCGTATTCCCCCGGCTGTATCTACCCCAAGCAGCCATTGAGAAGGCCAAGGTGGTGGGGTTGCAGCCTGACCTGTGGTACTGTAAACGGTTACTAGAGGAGGCAGGAGTGTGTGTGGGACCGGGGTGTGAGTATGGACAGAAGGAAGGCACCCACCACATCAGaCTGTGTGTCATGACCCCAGTGGAGACCATGGAAGAGGTACTGAAACGCCTGAAGAACTTCCACCTGCACTTCCTCAAGGAGTTCTCCTGAAAACTGGCTTCACCTTACAGCCCAAAGATGAATAATACATTTAACTTCAGACACAATCACAGTACAGAGAAGAAAATTGCAACCAGTAACATTGTTTAACATCTTTATATTTCAACAGAccatatttaaataaaaaataatggttAACAATACATTCATGTAATCATTA
>TU842116
GGAGCTTTACCCCTACTCACTTCCTCACCATCAGCATGAGAAAAGATCAAGGAACCATAGAAGTGGACAAGTCAATAGGCATCTCATCAGATTCTATTCTATTTATCTGAGAGGACCAGCAGGTGTGATAGTAGAATGTCAGTCCTCTGCCTGAGAGAGATCTGCCGCAAGATGAGGAGCATCAAACAGACAGAGCTGGAGCCCCTGGTGAGACGAGCCAATCAGATTAGAACTGAAGTCACACAGGGAGGGAGGAAGCCCTGTAAGGATGTGATAGATGTCAGCTGGGGAGACAAACACAGAGGAGGGGTCCAACCCTTGACCTTCGTCCGACAGGTTCTTGCAGCCTGCCTCTACCCTCAGTTGATCCACAGTTACAAACTGCCAGGGGACGTTAGACAGAGGGTCCAAAGCCTGCTGGGAGCATGTGATGGGGGGAGTGTAGGCTCATACACACCCACTGGTGGTATCTCTTATATACAGTGCAGTGTGTCCAACTTCATCTCTCGACGAGATGGTGGTGTACCATCGTCCCCCGAGAATATCTTCATGACCTCTGGCTCTCAAAGGTCAATAATGGTGAGAATCAtct

Function

NR:

description
alanine aminotransferase 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986070.1 False 1739 mRNA 0.51 11 70148848 70160827
TU842116 True 592 TUCP 0.50 4 70151807 70160838

Neighbor

gene id symbol gene type direction distance location
LOC110530443 LOC106569150 coding downstream 53713 70056503 ~ 70095135 (-)
LOC110530438 ripk1 coding downstream 595158 69537168 ~ 69553690 (-)
LOC110530436 rnf138 coding downstream 661714 69477306 ~ 69487134 (-)
LOC118965618 rnf138 coding downstream 674459 69461920 ~ 69474389 (-)
si:ch73-40a17.3 mep1b coding downstream 698425 69434542 ~ 69450423 (-)
LOC110530448 NA coding upstream 3187 70164014 ~ 70173178 (-)
gpaa1 gpaa1 coding upstream 25642 70186469 ~ 70198565 (-)
LOC110530449 NA coding upstream 38060 70198887 ~ 70200278 (-)
LOC100136597 LOC101482575 coding upstream 40042 70200869 ~ 70220172 (-)
LOC110530452 LOC106569141 coding upstream 93077 70253904 ~ 70392825 (-)
G741420 NA non-coding downstream 98874 70049743 ~ 70049974 (-)
G741418 NA non-coding downstream 100256 70048335 ~ 70048592 (-)
G741406 NA non-coding downstream 107565 70041052 ~ 70041283 (-)
G741400 NA non-coding downstream 114413 70034207 ~ 70034435 (-)
G741393 NA non-coding downstream 122733 70025521 ~ 70026115 (-)
G741829 NA non-coding upstream 13878 70174705 ~ 70175175 (-)
G741830 NA non-coding upstream 16240 70177067 ~ 70177672 (-)
G741831 NA non-coding upstream 17139 70177966 ~ 70178170 (-)
G741832 LOC106569144 non-coding upstream 17383 70178210 ~ 70178485 (-)
G741177 NA other downstream 365554 69782289 ~ 69783294 (-)
G741077 foxc1 other downstream 421417 69725774 ~ 69727431 (-)
G740718 LOC106569160 other downstream 718195 69408968 ~ 69430653 (-)
igfbp1 igfbp1 other downstream 991122 69150343 ~ 69157726 (-)
G738504 LOC106569192 other downstream 2723509 67423863 ~ 67425339 (-)
G742038 NA other upstream 358560 70519387 ~ 70525951 (-)
G742383 LOC106569128 other upstream 674531 70835358 ~ 70842457 (-)
G743076 NA other upstream 909807 71070634 ~ 71071082 (-)
G743421 NA other upstream 1514618 71675445 ~ 71675785 (-)

Expression


Co-expression Network