LOC110530448


Basic Information

Item Value
gene id LOC110530448
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70164014 ~ 70173178 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986071.1
TTGCCCTGCGTGGTGATACAGTGAACccatatatacgaaaattgcatttaccatttATTGCTTGAATTTAATTAAAGATAATTAACGACAGATTCTGACTTTTACTCTTCCTGATACCGGATTCGAAAGACGCAACCCTATCACTTGACACCCACAAGACCGATAaggaatatactttttactcagcCCGCCACACGGAATACTCCAGGTTAAACAACTATTGTCTCTTCTCTGCCTGAGATCTGCCCCAAGGTGAGGAGCATCAAACAGACAGAGCTGGAGCCCTTGGTGAGACGAGCAACTCAGATCAGAACAGAACTCACACAGACAGGGAGTGAGGAAGCCCTATATGGATGTGATAGACGTCAGTTGGGGAGACCCACACGGAGGAGGGGTAAAACCCTTGACTTTTGTCCGACAGgttctTGCAGCCTGCATATACCCTGAGCTGGTCGAAAGTGATAAACTGCCAGTGGACGTTAAACAGAGAGCCCAAAGCCTACTGAGCGCATGTGATGGGGGGAGTGTAGGCTCATACACGCTCTCTGGTGGTATCTCTTATATACAGTGCAGTGTGTCCAACTTCATCTCTCGACGAGATGGTGGTGTACCATCGTCCCCCGAGAATATCTTCATGACATCTGGCTCCCAGAGGTCTTTAATGcTGGTTCTGAAGCTGTTGGACCACAATCAGGCCTCACTCCCGACAGGTGTGCTGACCGCTGTTCCCGCCTACTCTTCCTTCAAAATGATGTTGCAATGGCTTGGTGCAGCCATTGTTCCCTACTACCTAGATGAGGAGCAGGGTTGGGCAATGGAGGTGGAGGAGCTACGCAGAGCACTACAGGCCTCTAAGGGTGTCTGCAACACAGTTGCCCTGTATGTCATCAACCCGGGGAATCCTACAGGTCATGTACAGAGCAGGAAGTGTATTGAAAAGGTGATCCGATTCGCTGCTGAGGAGAGGCTCTTCCTCATGGCTGATGAGGTGTATCAGGAAAGTGTGTTCGGGGAGGGCAGTGAGTTTTTCTCCTATAAGAAGGTTCTGTCTGAAATGGGGcctcatctctctcacacagtggAGCTGGCCTCTTTCCACTCAGCATCCAAAGGCTTCATGGGCGAGTGTGGGCTACGCGGAGGGTACGTGGAGCTGGTGAACCTTGACCCCGCCGTCATGAAGTACGCCTACACCATCTTTTCCACTGACATCTGTGCCCCTGTGACTGGTCAGCTAGCCCTGGAGCTCATGGCTAACCCTCCCAGGCCAGGGGACCCCTCATACCCGGTCTACGCCCAGGAGACCCAGTCTATCCGGGCCATGCTGGTCCATAACATGAACTGGGTCCCAGAGTTTCTGAACAATATCCCAGGGATCAGCTGTCAGCCGATGATGGGAGGAGCTTTCGTATTCCCCCGGCTGTATCTACCCCAAGCAGCCATTGAGAAGGCCAAAGTGGTGGGGTTGCAGCCTGACCTGTGGTACTGTAAACGGTTACTAGAGGAGGCAGGAGTGTGTGTGCGACCGGGGTGTGAGTATGGACAGAAGGAAGGCACCCACCACATCAGaCTGTGTGTCATGACCCCAGTGGAGACCATGGAAGAGGTACTGAAACGCCTGAAGAACTTCCACCTGCACTTCCTCAAGGAGTTCTCCTGAAAACTGGCTTCACCTTACAGCCCAAAGATTAATAATACATTTAACTTCAGACACGATCACAGTACAGAGAAGAAAATTGCAACCAGTAACATTGTTTAACATCTTTATCTTTCAACAGACCATATTTAAATAATAAAGTAAGACAACACATGACCCGAGTTGAAGAATTCTGCATTTGGATTGAACAAAGATGGGCGTGAGCGGCTTTTAACATAATTATTATGATTCAAGTCATGCATGTCCACAGAAAcatatttttcttattttgtcaaCCTTCGGCATTAGAGAATGAAACTACCTGTCTCAGACAGTGTAGATCCCCTCTAAATACTCACTCTTCTTAACAATAAGAACGTTACCTTGTTAGGATCTGACATTGTGGGGCAGAGATATTGGAACTAAGGGAATAAGTAAAAGTTGACATTTAAGGTAAGGATAGATTTTGGCCATATTCACTAACATCCAAAGTCCATGTCAATTCAATACTTTCTATGACTGATATgtttgtctcacctagctatcatAAAATGAATGCgttaactgtaagtcgctctgcattagagcatctgctaaattacaaagATGTAAAAATGATGACAAATAAAGACTTTTTAAAACATTG
>TU842114
ATACTCTGGAGTTAATGATTTGATCTCTTATATATGTGAGTTTTCTGTTTTCCATTGCAGGTGGTGGGGTTGCAGCCTGACCTGTGGTACTGTAAACGGTTACTAGAGGAGGCAGGAGTGTGTGTGCGACCGGGGTGTGAGTATGGACAGAAGGAAGGCACCCACCACATCAGaCTGTGTGTCATGACCCCAGTGGAGACCATGGAAGAGGTACTGAAACGCCTGAAGAACTTCCACCTGCACTTCCTCAAGGAGTTCTCCTGAAAACTGGCTTCACCTTACAGCCCAAAGATTAATAATACATTTAACTTCAGACACGATCACAGTACAGAGAAGAAAATTGCAACCAGTAACATTGTTTAACATCTTTATCTTTCAACAGACCATATTTAAATAATAAAGTAAGACAACACATGACCCGAGTTGAAGAATTCTGCATTTGGATTGAACAAAGATGGGCGTGAGCGGCTTTTAACATAATTATTATGATTCAAGTCATGCATGTCCACAGAAAcatatttttcttattttgtcaaCCTTCGGCATTAGAGAATGAAACTACCTGTCTCAGACAGTGTAGATCCCCTCTAAATACTCACTCTTCTTAACAATAAGAACGTTACCTTGTTAGGATCTGACATTGTGGGGCAGAGATATTGGAACTAAGGGAATAAGTAAAAGTTGACATTTAAGGTAAGGATAGATTTTGGCCATATTCACTAACATCCAAAGTCCATGTCAATTCAATACTTTCTATGACTGATATgtttgtctcacctagcta
>TU842115
AGGTGAGGAGCATCAAACAGACAGAGCTGGAGCCCTTGGTGAGACGAGCAACTCAGATCAGAACAGAACTCACACAGACAGGGAGTGAGGAAGCCCTATATGGATGTGATAGACGTCAGTTGGGGAGACCCACACGGAGGAGGGGTAAAACCCTTGACTTTTGTCCGACAGgttctTGCAGCCTGCATATACCCTGAGCTGGTCGAAAGTGATAAACTGCCAGTGGACGTTAAACAGAGAGCCCAAAGCCTACTGAGCGCATGTGATGGGGGGAGTGTAGGTAAGGAGGA

Function

NR:

description
alanine aminotransferase 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986071.1 False 2282 mRNA 0.47 11 70164014 70173178
TU842114 False 784 lncRNA 0.40 2 70164116 70165084
TU842115 True 290 lncRNA 0.52 3 70170956 70172928

Neighbor

gene id symbol gene type direction distance location
LOC110530971 NA coding downstream 3187 70148848 ~ 70160838 (-)
LOC110530443 LOC106569150 coding downstream 68879 70056503 ~ 70095135 (-)
LOC110530438 ripk1 coding downstream 610324 69537168 ~ 69553690 (-)
LOC110530436 rnf138 coding downstream 676880 69477306 ~ 69487134 (-)
LOC118965618 rnf138 coding downstream 689625 69461920 ~ 69474389 (-)
gpaa1 gpaa1 coding upstream 13291 70186469 ~ 70198565 (-)
LOC110530449 NA coding upstream 25709 70198887 ~ 70200278 (-)
LOC100136597 LOC101482575 coding upstream 27691 70200869 ~ 70220172 (-)
LOC110530452 LOC106569141 coding upstream 80726 70253904 ~ 70392825 (-)
LOC110530457 ccd16 coding upstream 289216 70462394 ~ 70463615 (-)
G741420 NA non-coding downstream 114040 70049743 ~ 70049974 (-)
G741418 NA non-coding downstream 115422 70048335 ~ 70048592 (-)
G741406 NA non-coding downstream 122731 70041052 ~ 70041283 (-)
G741400 NA non-coding downstream 129579 70034207 ~ 70034435 (-)
G741393 NA non-coding downstream 137899 70025521 ~ 70026115 (-)
G741829 NA non-coding upstream 1527 70174705 ~ 70175175 (-)
G741830 NA non-coding upstream 3889 70177067 ~ 70177672 (-)
G741831 NA non-coding upstream 4788 70177966 ~ 70178170 (-)
G741832 LOC106569144 non-coding upstream 5032 70178210 ~ 70178485 (-)
G741915 NA non-coding upstream 125235 70298413 ~ 70298840 (-)
G741177 NA other downstream 380720 69782289 ~ 69783294 (-)
G741077 foxc1 other downstream 436583 69725774 ~ 69727431 (-)
G740718 LOC106569160 other downstream 733361 69408968 ~ 69430653 (-)
igfbp1 igfbp1 other downstream 1006288 69150343 ~ 69157726 (-)
G742038 NA other upstream 346209 70519387 ~ 70525951 (-)
G742383 LOC106569128 other upstream 662180 70835358 ~ 70842457 (-)
G743076 NA other upstream 897456 71070634 ~ 71071082 (-)
G743421 NA other upstream 1502267 71675445 ~ 71675785 (-)

Expression


Co-expression Network