G699873


Basic Information

Item Value
gene id G699873
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 34389663 ~ 34393886 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU796374
agaccctttactcagtacttgtttgaagcacctttagcagtgattacagtgttgagtcttcttgggtatgacactactaacttggcacacctgtatttggggtgtttctcccattattctttGCAAAtcctaaatgtggaaaaagtgaaggaatctgaatactttccaaatgcactgtataccatCATAGTGGATATGTTAGAGAATGTTATTATGTCATAGTGGCTATTTTAGAGTAAGTCATTGTCAGTTTAAGAGAATTACATTATGATGTAATTGTGGCCGTTTTAGATAATGCCATTATGATGTCATAGAATCTCTTAAATAATGTCACTTTTGATTTTCCTGAATCCTTTATGTTTCAGAAGGTTATGACAGTGATAGTAATTTAGAGCAGCAACACACTAGAGACAATTCAATGTGCTTGTTCTTCACCCCCTTACAAACACATGGATATTGTGTATCAAGGCTATCATAGGTCCATAAATGTATATAGCCTACTATATGAATACCCTCATTCAAGAACATACAAATGTTCCCATCATACATTTAGGAGAGAATACTGCCAATCTGTGGAAATATTACTCAGTTGCTCGCaaaccagtaaaaaaaaaaaaaaaatacaaaaataggcATAAACACCCAATTACAAACCCTCTAATGGCCCGGAGttaacagtaacagatatactaaaCACAGGATGAGGAGAGCCAATCGGTTATCAGTCCAAGAAGCAACTAGATTAGGTAACAGCAATGGCAGTAACATTCAGGCTCAAATAATAATACAGATCTGATACTGACCAAACATGCATAAAGCTGCACACACAAAAATCCTCACTGCAGCATTTTCAATATTTTTTACAGAGAAATTATGCCAAATCACAgcattaaaaacaaaaatataattattctCACATTTATACACAAGTATAacaccaaagacaaaacaaattccatctaaaaacaaaaacacacaataagATACATCAAATTATTGCCAACTCTTTGATTCACATTTGTTTCAAACAAAACATCACATCTTGGGCTTTCCTTCAGCATTCAGATATCGCTGAGGTACAGTATGTTGTTTCAGCTCAGACACGAGAAGTGCTTTAGTTCAACTACTACTCTACATATAAGTCTACTTAGAAGCCAAAGTAGACTACTGAATAGTTACTGTGCAAGGAGGACAGAGCTATACAAGAATAAACTGTTATAATCAGACCTTTAACAACTAGATGGTGCGCAATTTCTAAAATTAAATAAGTCTCTGCTTGGTTCTGcttgcctgagttagaatacctcatgataagctgtagtatttttcatagctggctatttaccaccacaaactgatgctggcaatAAGGCCGCACTCAACGAGCTATATTAGGGTCATAAGTCAACAAGAAAATGCTCAGACAgcggcagcgctcctagtggccgctGATTTTAATGCAAGAAAAAAAAACTTATTTCAGTTtactcatttctaccagcatttcACCTACACAACCagtagtggtggaaaaagtacccaattgtcatacttgagtataagtaaagataccttaagaaaatgactcaagtgaaagtgacccagtaaaatactactcgagtctaaaagtatttggttttaaaatgtactttagtatcaaaagtaagtTTAAATAGccaaaatatacttaagtatcaaaattaaaatgataaatcatttcaaattccttatattatgcaaaccagacagcaccattttcttattTTACAAAGTATTTCTGCtaagtgagtctgccagataataggcagtagggataaccagggatgttctcttgattagtgTGCAaattgtcctgctaagcattcaaaatgtaacgagtacttttgggtgtcagggaaaagtacattgtattcttcaaatataaaatagtaaaataaagtacagataaccAAAAAATActttagtactttaaagtatttttacaccactggcaACTAGaggaagaaaaacaaaaaaactctagaccaccttcactccacagacagagaagcatacaatgctctccctcaccttccatttggcaaatctgaccataactcgatcttcctgattcctgcttacaagcaaaaactcaaaacaggaagtaccatcGACATGCTCAAttggaagtggtccgatgaagcggatgctatgCTACATCAccgttttgctagcacagaatggaatatgttccGAGATTCATTCGATGGCATTAAGGAGTTTACCAtatcagtcaccagcttcattaataagtgcatcgactacatcatccccacagtgactctacatacatatcccaaccagaagccatagattacaggcaacatccgcactgagctaaagcttctgctttcaaggagcgggacactaatccggacacttataagaagtCCCACTATGCcttccgatgaaccatcaaacaggcagtgtcaatacaggactaagatcgaatcctactaaaCCAGCTCTTACGTTCGTCGGATAGagcaaggcttgcaaactatcacagattacaaaaagaaacccaatcacgagctgcccagtgatacgagcctaccagacgagctaaatgccttctatgctcgcttcaaggcaagcaacactgaacaatGCAAGAGCATCCGCTGagcagctggcaagtgtcttcttcACTGACACTTTCTACCTGATCCAGTCCGTAatacctacactaccgttcaaaaggtgAGTCAcctggaaatgtccttgtttttgaaagaataaattagtttttgtccattaaaatatcaaattgataagaaatacagtgtagacattgttaatgttgtaaatgactattgtagctggaaacggctgatttttaataaTATCtaaataggcgtacagaggcccattatcagcaaccatcactcctgtgttccaatgtcacgttgtgttagctaatccaagtttatccttttaaaaaggctaatttatcattagagAACCCTTTTGCATTTGTTAGCTCTTCTGAAAGctgttgttctaattaaagaagcaataaaactggccttctttagactagttgagtatctggagcatcatcatttgtgggttcgattacaggctcaaaatggccagaaaaaaatGACTTTCCTCTGAAagtctattcttgttcagagaaatgaaggctattccatgtgagaaattgccaagaaactgaagatctggtacaacgctgtgtactactcccttcacagaacagagcaaactggctttaaccaggatagaaagaggagtggcaggccccggtgcacaagtgagcaagaggacaagt
>TU796375
agaccctttactcagtacttgtttgaagcacctttagcagtgattacagtgttgagtcttcttgggtatgacactactaacttggcacacctgtatttggggtgtttctcccattattctttGCAAAtcctaaatgtggaaaaagtgaaggaatctgaatactttccaaatgcactgtataccatCATAGTGGATATGTTAGAGAATGTTATTATGTCATAGTGGCTATTTTAGAGTAAGTCATTGTCAGTTTAAGAGAATTACATTATGATGTAATTGTGGCCGTTTTAGATAATGCCATTATGATGTCATAGAATCTCTTAAATAATGTCACTTTTGATTTTCCTGAATCCTTTATGTTTCAGAAGGTTATGACAGTGATAGTAATTTAGAGCAGCAACACACTAGAGACAATTCAATGTGCTTGTTCTTCACCCCCTTACAAACACATGGATATTGTGTATCAAGGCTATCATAGGTCCATAAATGTATATAGCCTACTATATGAATACCCTCATTCAAGAACATACAAATGTTCCCATCATACATTTAGGAGAGAATACTGCCAATCTGTGGAAATATTACTCAGTTGCTCGCaaaccagtaaaaaaaaaaaaaaaatacaaaaataggcATAAACACCCAATTACAAACCCTCTAATGGCCCGGAGttaacagtaacagatatactaaaCACAGGATGAGGAGAGCCAATCGGTTATCAGTCCAAGAAGCAACTAGATTAGGTAACAGCAATGGCAGTAACATTCAGGCTCAAATAATAATACAGATCTGATACTGACCAAACATGCATAAAGCTGCACACACAAAAATCCTCACTGCAGCATTTTCAATATTTTTTACAGAGAAATTATGCCAAATCACAgcattaaaaacaaaaatataattattctCACATTTATAC
>TU796373
TCCGCATTTTCTACAAGTCACCCCAATGAACCAAAGCTGGCTAAGATTCATTAGTTTGTTACAAAAATATCAGTGTCTCCATCTTTTGAGTTTGTAACAGCAAACTTCACAAGAGAAAAATACCTTCAAAACTCTTAGAAAACAAATATTGAAGACACCACCACTAAttgaaaaatatagttttatatttaCATTTTCCTTTTTTAAATGATCTATCAGACATAACTTGTACATATTGCATCTTCCCACAAAGCTAGAGTCTAAATGATTTGTAATTGTCTGTTAACTTTAGCCTCGGGTGTGTCTAGGACTGAAGGAGTATGAGAACATTGAAATGAATACAATTAAGCACAATAAAACATACAAGATGCTCAAATGAACAGAAAATAGGTTAAAAGGAACAATTAGCACTGGCCAATCTGACTGGCAAACAATGTCACTCAGCAATATTTCCCCCCCATTACCCCACAACCATAATCACAATGTAGTAGACCGCAGGACAGCAGTATTATAAAGGTTGTGGCTGTTTTATCCAAGCAGCAAATAACCCCTAACCAACCAAAATGCATAGAATAGCTCTGGTCGTTACAGGTCTATAGTGCATATTTATTATACTCCTGGTAAAAGTCAGAGCGCATTTTGTGGGAAAACATTGCTACATTCAACATttcagtacatacagtgcattcggaatgtattcaggccccttgactttatcaacattttgttacagccttattctaaaaaggattcaatagttttttcccgCTTATCAAAatatatacacaataccccataatgacaaatcaaaaacaggtttagaattttttttcaactttatataaccccccccccccctcccctgaaatatcacatttacatcattattcagaccctttactcagtacttgtttgaagcacctttagcagtgattacagtgttgagtcttcttgggtatgacactactaacttggcacacctgtatttggggtgtttctcccattattctttGCAAAtcctaaatgtggaaaaagtgaaggaatctgaatactttccaaatgcactgtataccatCATAGTGGATATGTTAGAGAATGTTATTATGTCATAGTGGCTATTTTAGAGTAAGTCATTGTCAGTTTAAGAGAATTACATTATGATGTAATTGTGGCCGTTTTAGATAATGCCATTATGATGTCATAGAATCTCTTAAATAATGTCACTTTTGATTTTCCTGAATCCTTTATGTTTCAGAAGGTTATGACAGTGATAGTAATTTAGAGCAGCAACACACTAGAGACAATTCAATGTGCTTGTTCTTCACCCCCTTACAAACACATGGATATTGTGTATCAAGGCTATCATAGGTCCATAAATGTATATAGCCTACTATATGAATACCCTCATTCAAGAACATACAAATGTTCCCATCATACATTTAGGAGAGAATACTGCCAATCTGTGGAAATATTACTCAGTTGCTCGCaaaccagtaaaaaaaaaaaaaaaatacaaaaataggcATAAACACCCAATTACAAACCCTCTAATGGCCCGGAGttaacagtaacagatatactaaaCACAGGATGAGGAGAGCCAATCGGTTATCAGTCCAAGAAGCAACTAGATTAGGTAACAGCAATGGCAGTAACATTCAGGCTCAAATAATAATACAGATCTGATACTGACCAAACATGCATAAAGCTGCACACACAAAAATCCTCACTGCAGCATTTTCAATATTTTT
>TU796372
agaccctttactcagtacttgtttgaagcacctttagcagtgattacagtgttgagtcttcttgggtatgacactactaacttggcacacctgtatttggggtgtttctcccattattctttGCAAAtcctaaatgtggaaaaagtgaaggaatctgaatactttccaaatgcactgtataccatCATAGTGGATATGTTAGAGAATGTTATTATGTCATAGTGGCTATTTTAGAGTAAGTCATTGTCAGTTTAAGAGAATTACATTATGATGTAATTGTGGCCGTTTTAGATAATGCCATTATGATGTCATAGAATCTCTTAAATAATGTCACTTTTGATTTTCCTGAATCCTTTATGTTTCAGAAGGTTATGACAGTGATAGTAATTTAGAGCAGCAACACACTAGAGACAATTCAATGTGCTTGTTCTTCACCCCCTTACAAACACATGGATATTGTGTATCAAGGCTATCATAGGTCCATAAATGTATATAGCCTACTATATGAATACCCTCATTCAAGAACATACAAATGTTCCCATCATACATTTAGGAGAGAATACTGCCAATCTGTGGAAATATTACTCAGTTGCTCGCaaaccagtaaaaaaaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU796374 False 3334 lncRNA 0.37 1 34389663 34392996
TU796375 False 925 lncRNA 0.35 1 34392072 34392996
TU796373 False 1751 lncRNA 0.35 1 34392136 34393886
TU796372 True 614 lncRNA 0.35 1 34392383 34392996

Neighbor

gene id symbol gene type direction distance location
LOC110529843 LOC105030678 coding downstream 132401 34255515 ~ 34257262 (-)
LOC110529846 LOC106571592 coding downstream 232026 34136558 ~ 34157637 (-)
ankef1a LOC106571587 coding downstream 360532 34017010 ~ 34029131 (-)
LOC110529840 LOC106571603 coding downstream 380286 33975488 ~ 34009377 (-)
LOC110529836 LOC106571586 coding downstream 548061 33831672 ~ 33841602 (-)
LOC110529848 LOC106571583 coding upstream 151270 34545156 ~ 34550128 (-)
LOC118965512 NA coding upstream 403959 34797845 ~ 34799304 (-)
LOC110529850 fau coding upstream 908668 35302554 ~ 35304730 (-)
LOC110529851 prpf39 coding upstream 913042 35306928 ~ 35321805 (-)
LOC110529854 LOC106571577 coding upstream 1032430 35426316 ~ 35429137 (-)
G699872 NA non-coding downstream 6200 34382927 ~ 34383463 (-)
G699871 NA non-coding downstream 6775 34382648 ~ 34382888 (-)
G699868 LOC107678310 non-coding downstream 9368 34379907 ~ 34380295 (-)
G699866 NA non-coding downstream 11880 34377548 ~ 34377783 (-)
G699803 NA non-coding downstream 115023 34274350 ~ 34274640 (-)
G699876 NA non-coding upstream 2016 34395902 ~ 34396112 (-)
G699877 NA non-coding upstream 2986 34396872 ~ 34397200 (-)
G699898 NA non-coding upstream 45513 34439399 ~ 34525517 (-)
G699904 NA non-coding upstream 103454 34497340 ~ 34517279 (-)
G699903 NA non-coding upstream 131727 34525613 ~ 34530768 (-)
G699468 NA other downstream 437307 33943022 ~ 33952356 (-)
G698356 NA other downstream 1399602 32989245 ~ 32990061 (-)
G697774 LOC106571626 other downstream 1890253 32498799 ~ 32499410 (-)
LOC110529804 ypel5 other downstream 2172114 32214451 ~ 32217572 (-)
G701454 NA other upstream 1189112 35582998 ~ 35589877 (-)
LOC110529865 LOC106571568 other upstream 1247469 35633473 ~ 35705333 (-)
G701618 LOC106571560 other upstream 1506737 35900623 ~ 35918175 (-)
LOC110529880 LOC106571768 other upstream 2961210 37355096 ~ 37361922 (-)
LOC110530908 otof other upstream 3095341 37474229 ~ 37626960 (-)

Expression


Co-expression Network