G699903


Basic Information

Item Value
gene id G699903
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 34525613 ~ 34530768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU796428
cggtggcatgtgcctgtaatccaagtcactgggaggctgaggttggtggatcaagtgagctgaggagctctgggctgcagcactctatgtcgaacgggtgtccacgctaagttcggtatcgatatggtgttcctgggggagcccgggaccaccaggttgtctaaggaggggtgaaccggcccaggtcggaaacgaagcaggtcaaatcccccgtgctgtccagtagtgggataatacctgtgagtagatgctgcagtgcagccttggcaaaacat
>TU796431
gcggtggcatgtgcctgtaatccaagtcactgggaggctgaggttggtggatcaagtgagctgaggagctctgggctgcagcactctatgtcgaacgggtgtccacgctaagttcggtatcgatatggtgttcctgggggagcccgggaccaccaggttgtctaaggaggggtgaaccggcccaggtcggaaacgaagcaggtcaaatcccccgtgctgtccagtagtgggataatacctgtgagtagatgctgcagtgcagccttggcaaaacat
>TU796435
cgggtgcggtggcatgtgcctgtaatccaagtcactgggaggctgaggttggtggatcaagtgcgctgaggagctctgggctgcagcacgctatgtcgaacgggtgtccacgctaagttctgtatcgatatggtgttcctgggggagcccgggaccaccaggttgtctaaggaggggtgaaccggcccaggtcggaaacgaagcatgtcaaatcccccgtgctgtccagtagtgggataatacctgtgagtagatgctgcagtgcagccttggcaaaacat
>TU796432
cggtggcatgtgcctgtaatccaagtcactgggaggctgaggttggtggatcaagtgagctgaggagctctgggctgcagcactctatgtcgaacgggtgtccacgctaagttcggtatcgatatggtgttcctgggggagcccgggaccaccaggttgtctaaggaggaatgaaccggcccaggtcggaaacgaagcaggtcaaatcccccgtgctgtccagtagtgggataatacctgtgagtagatgctgcagtgcagccttggcaaaacatcga

Function

NR:

description
PREDICTED: sphingosine-1-phosphate lyase 1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU796428 False 275 lncRNA 0.57 2 34525613 34530768
TU796431 False 276 lncRNA 0.57 2 34525613 34528316
TU796435 False 281 lncRNA 0.57 3 34525613 34529542
TU796432 True 278 lncRNA 0.56 2 34529259 34530768

Neighbor

gene id symbol gene type direction distance location
LOC110529843 LOC105030678 coding downstream 268351 34255515 ~ 34257262 (-)
LOC110529846 LOC106571592 coding downstream 367976 34136558 ~ 34157637 (-)
ankef1a LOC106571587 coding downstream 496482 34017010 ~ 34029131 (-)
LOC110529840 LOC106571603 coding downstream 516236 33975488 ~ 34009377 (-)
LOC110529836 LOC106571586 coding downstream 684011 33831672 ~ 33841602 (-)
LOC110529848 LOC106571583 coding upstream 14388 34545156 ~ 34550128 (-)
LOC118965512 NA coding upstream 267077 34797845 ~ 34799304 (-)
LOC110529850 fau coding upstream 771786 35302554 ~ 35304730 (-)
LOC110529851 prpf39 coding upstream 776160 35306928 ~ 35321805 (-)
LOC110529854 LOC106571577 coding upstream 895548 35426316 ~ 35429137 (-)
G699898 NA non-coding downstream 96 34439399 ~ 34525517 (-)
G699904 NA non-coding downstream 8334 34497340 ~ 34517279 (-)
G699877 NA non-coding downstream 128413 34396872 ~ 34397200 (-)
G699876 NA non-coding downstream 129501 34395902 ~ 34396112 (-)
G699873 NA non-coding downstream 131727 34389663 ~ 34393886 (-)
G699979 NA non-coding upstream 23049 34553817 ~ 34556091 (-)
G700038 LOC100136012 non-coding upstream 112010 34642778 ~ 34643077 (-)
G700064 NA non-coding upstream 128544 34659312 ~ 34659599 (-)
G700066 NA non-coding upstream 129238 34660006 ~ 34660550 (-)
G700074 NA non-coding upstream 136555 34667323 ~ 34667818 (-)
G699468 NA other downstream 573257 33943022 ~ 33952356 (-)
G698356 NA other downstream 1535552 32989245 ~ 32990061 (-)
G697774 LOC106571626 other downstream 2026203 32498799 ~ 32499410 (-)
LOC110529804 ypel5 other downstream 2308064 32214451 ~ 32217572 (-)
G701454 NA other upstream 1052230 35582998 ~ 35589877 (-)
LOC110529865 LOC106571568 other upstream 1110587 35633473 ~ 35705333 (-)
G701618 LOC106571560 other upstream 1369855 35900623 ~ 35918175 (-)
LOC110529880 LOC106571768 other upstream 2824328 37355096 ~ 37361922 (-)
LOC110530908 otof other upstream 2958459 37474229 ~ 37626960 (-)

Expression


Co-expression Network