G721435 (LOC106568983)


Basic Information

Item Value
gene id G721435
gene name LOC106568983
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53008689 ~ 53010120 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU819663
CTCTCGTGCTGCCTCAGCCACAGAGGGCTCTTTGATATCTGCAGCTCAAAGGACTTGGAGGCTTTGTAGCAGAAGTTACTGCAGAAGCTCTTGCGTTCCGTGATGTCATAGACTTTATTGGTTTTGGTGGAAATTTTGAACTGTTGAGTGGAGacCTTGCCCAGTTTGTTTGAACAGACAGGATAACCGCACAGCTTCACAATGGACCTCTCCTCAACTGTGTCTTTGTAATTGGCAGTAGTGATCAACCTTGCACAGTCAACCAGGAAGTCGTCTGCTACGCTGTCCTCCAAGAGACGCTCCACCACCTGCAGAGCCCTCTTCTCCAGATCCAGCTTCTCTCTCAGGGTCTCCCTCACTGCCTCTCTCCTGGGTTTAGGGAGACAGTGGTTCTACGCGGTCAGCGCCACAGTCAGAGAGACGCATTGGGGGGGGGTATGACCATATCAGAGACAAACACTGCTCACAAATGGGAGTCCAGCAACACTGGTAATGGTATTCAACCCCCCAAAATATGAAGACAACAGCAACCTTCatatgtttgggaaccactgtcacATTGGCCTGAAATCCAGACCCGTTTTgcgctaacattccactccttgtactcGTGTCATATTGACAAattgtttggcatgacaaggCGTGGTTTgttcagtgtcttcagaaagtactcacacgctccccccccccccatgttttgttgtgttacagcctaaacgTAAAATAAGTACAATTGTGATTGTGTCCtgtcaaagtgaaaatatgtttttagaaatgtttacaaattaaaagatgaaaatgtcttgagtcaataagtattccacCCCTTTGTTAtcacaagcctaaataagttcaggagtaaacatttgcataATAAATTAGATGGACTaactgtgcaataatagtgtttaacatgctttttgaatgactacctcatctcagtacccc

Function

NR:

description
putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU819663 True 951 lncRNA 0.45 4 53008689 53010120

Neighbor

gene id symbol gene type direction distance location
LOC110530097 NA coding downstream 7020 52999599 ~ 53001669 (-)
LOC110530094 LOC106568986 coding downstream 40866 52949001 ~ 52967823 (-)
LOC110530090 LOC106568989 coding downstream 91252 52906367 ~ 52917437 (-)
selenof sep15 coding downstream 189982 52793317 ~ 52818726 (-)
LOC110530084 LOC106568816 coding downstream 252087 52733010 ~ 52756602 (-)
LOC110530096 LOC106569026 coding upstream 5058 53015178 ~ 53018104 (-)
LOC110529119 LOC106569026 coding upstream 9386 53019506 ~ 53022146 (-)
dipk1aa LOC106568980 coding upstream 49526 53059646 ~ 53067786 (-)
LOC110530106 LOC106568974 coding upstream 245077 53255197 ~ 53258515 (-)
nsun4 nsun4 coding upstream 332483 53342603 ~ 53360245 (-)
G721425 LOC106568985 non-coding downstream 19133 52986917 ~ 52989556 (-)
G721414 NA non-coding downstream 31159 52974797 ~ 52977530 (-)
G721289 NA non-coding downstream 229216 52779036 ~ 52779473 (-)
G721288 NA non-coding downstream 230093 52778378 ~ 52778596 (-)
G721407 NA non-coding upstream 4498 53014618 ~ 53100336 (-)
G721509 NA non-coding upstream 114254 53124374 ~ 53124686 (-)
G721464 LOC106568976 non-coding upstream 139373 53149493 ~ 53152132 (-)
G721515 NA non-coding upstream 142557 53152677 ~ 53152971 (-)
G721516 NA non-coding upstream 143003 53153123 ~ 53153362 (-)
G721275 NA other downstream 247238 52761039 ~ 52761451 (-)
LOC110530043 LOC106568739 other downstream 1749670 51252355 ~ 51259061 (-)
G719151 NA other downstream 2069218 50936928 ~ 50939471 (-)
LOC110530011 LOC106568709 other downstream 3119437 49866272 ~ 49937001 (-)
G718489 NA other downstream 3170993 49785674 ~ 49837696 (-)
LOC110529122 LOC106568971 other upstream 453062 53462034 ~ 53478913 (-)
G722459 NA other upstream 488028 53495804 ~ 53499730 (-)
G722602 NA other upstream 793323 53803443 ~ 53856065 (-)
G722670 NA other upstream 916108 53926228 ~ 53927959 (-)
G722761 NA other upstream 1114259 54124379 ~ 54139341 (-)

Expression


Co-expression Network