G724287 (LOC106568908)


Basic Information

Item Value
gene id G724287
gene name LOC106568908
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55635538 ~ 55646014 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU822777
ctctcatctttttaagtgggagaacttgcacaattggtggctgacgaaATACTTTTTTGCGCCACTGTATGTATAAACAGTATTATAAGTATATTGAGTCAGGAAACCCTCATGTTCATGTTGTGTTAATTACCTGTCCTGGGATTGGTGGGATTGTGGGTACTGGGCATCCAGGGGCTCCAGTGGGGACTGGGGGTCTGGTGTCTCCTCCCCTCGCCTTTGTTGTTGGTCGGGGGAGAAGCTGAGCAGATGTCGGCTGCTTTGTGGCTTCCCAGTGGACAGGCTGGAGTTGCTGGTCTCTGACTCCCACACActtaTGGGACCCGTGTTGAGCACGAAGAAGACCAGGACGACCATAAGGCACACAGCCCGTCTCTTTGGAGCCGTCACCTTCAGAACAGTGTTCTCCGTGAGAAGTCCGTCCAGCTGGGTCCTAAGGGATCCGTTCTCCCGGAGCAGCCTCTGGTTCTCACACAGTGCCCCCCTGAGACGGGCCTCCAGAGCCTGCTGGGCCTCTTTCCTCCTCAGCCTGGACAGCGTGGCCGAGTCACGGTTCTTCACCATCCTCTGCTGCCGCCGCACCACACACGCCTCAGTGTTCACTGCTGTGCTGTGATAGGTCACCGTCATGGGATGGGCATGGCCAGTGAGGGCAGTGGTCCCCATGGTAACATTGGGGACAGTTGGCATGGTGACCACCTGGTTGGTGACAGCGAGGAAGGCAGGGGTTGGGGAAGTGATCTGGGGTCCAATCACCTGTTTCGGCTTGAGATGCATTGTGTGAACTGCTGATGACAAAGACCAGATGCAGAGTTAAGAAATAGTTcaacccttctgtctgtctgttttagcCCTGTCCCAGACCTGGATTAGCTTTAGGCTATGGCATGACAGAGTAAGACGAGTTAAAGCGCATACAGATCTGAGACCATCCCATGTCCCACTGGGGCCTTTTCCACTTAAGAGTACATCACTGTAATAATTGATGGATTACTGTCATAGTAAACAGCATTTCTCAGC

Function

NR:

description
cyclic AMP-dependent transcription factor ATF-6 alpha-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU822777 True 1020 TUCP 0.53 4 55635538 55646014

Neighbor

gene id symbol gene type direction distance location
LOC110530170 LOC106568909 coding downstream 20604 55567843 ~ 55614934 (-)
LOC118965626 NA coding downstream 71439 55555878 ~ 55564099 (-)
odr4 odr4 coding downstream 91404 55533616 ~ 55544134 (-)
LOC110530166 arpc5 coding downstream 167468 55461196 ~ 55468070 (-)
si:ch211-106h4.4 LOC106568915 coding downstream 179486 55423666 ~ 55456052 (-)
LOC110530171 LOC106568907 coding upstream 37611 55683625 ~ 55688984 (-)
LOC110530174 LOC106568905 coding upstream 84420 55730434 ~ 55764053 (-)
LOC110530175 LOC106569017 coding upstream 123412 55769426 ~ 55774173 (-)
LOC110530176 LOC106568901 coding upstream 153894 55799908 ~ 55814928 (-)
LOC110530178 LOC106568902 coding upstream 169370 55815384 ~ 55839341 (-)
G724272 NA non-coding downstream 45922 55588488 ~ 55589616 (-)
G724264 NA non-coding downstream 59851 55575059 ~ 55575687 (-)
G724246 NA non-coding downstream 88421 55546847 ~ 55547117 (-)
G724245 NA non-coding downstream 89543 55545734 ~ 55545995 (-)
G724042 NA non-coding downstream 124974 55510338 ~ 55510564 (-)
G724366 LOC106568906 non-coding upstream 71850 55717864 ~ 55718713 (-)
G724370 NA non-coding upstream 75070 55721084 ~ 55721324 (-)
G724371 NA non-coding upstream 76089 55722103 ~ 55722418 (-)
G724372 NA non-coding upstream 76963 55722977 ~ 55723486 (-)
G724373 NA non-coding upstream 78003 55724017 ~ 55724208 (-)
G723966 NA other downstream 238653 55396624 ~ 55396885 (-)
G723955 NA other downstream 257762 55377281 ~ 55377776 (-)
G722864 LOC106581475 other downstream 1353560 54281685 ~ 54281978 (-)
G722854 NA other downstream 1383992 54251114 ~ 54251546 (-)
G722761 NA other downstream 1496197 54124379 ~ 54139341 (-)
G724400 NA other upstream 139503 55785517 ~ 55791485 (-)
G724943 LOC106604981 other upstream 474189 56120203 ~ 56128288 (-)
G725007 LOC106568897 other upstream 573502 56219516 ~ 56232939 (-)
LOC110530186 tm56b other upstream 728639 56374588 ~ 56386555 (-)
G725280 LOC106568997 other upstream 942329 56588343 ~ 56589271 (-)

Expression


Co-expression Network