G726598


Basic Information

Item Value
gene id G726598
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57294624 ~ 57361794 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU825438
CTTTATTGTTAAGTGACAGTAAGAGTCAtctttatcatcatcatcatcattatcacatTAGTCAGTACAAGAACTACAGAACATTaaaatgtcaacaaaaaaaaatcacaacaaaATTCAAGTCTTCATTGTTTCATTTTCATAGCCTATAACCCTGGGCTGTACTGTGTTGTCTATAGCccttaaaaggtcatttaccttTGATGGATGTCTCCTTTGTTTTTACAAGAAAGGGCACACTGTGGTCTAATCGTCTATTGCCATGCTTCCTATTGCTAGATAAGCAGATATCGAAAAGCACAAAAACACTGCGTTTAATACTGCGAGGACAGGAGCCAGAAGCTGACGGAAATATCTCAACAAAAATCAGCCTATGAGACATCTGAGATTATATGGCATTAAACCTGACCTGAGGTCATTGAACCTGACCTGCCCATGTATATTATACAGAACTACATACGTTTCTGCTTGTTAAGAGTGTTTCCTATTCTGAGAAACAGTGCGGTTTTAACAgcatcttttttttaaataatgtactgtacatttatTTTCCATATTTTGAAAATCCCTAGGAACAGGTGTTAATTCACATTTTTCTACTTATTACACAACCTGCATGACAGTACAATTACATGCCCCAAGCTAAGTATGCATACCTGCATGAAGCCTGCACAAATCCTATCACAAGGACTACATTCCACCAATAGCCCCACTATCACACCAGTAAGAATGCATGCCCAATGCAGCGCTTCCATCTAGTATACTACTGTTAGTGAGGATATTGGATCAGAGCCAATCATGTCTCTCCGTCCAGAGCATGGATACATCTTGTACCAGCCAACAGCGAATGGCTATGTTCCAGGTCACAGGTGAAGCCAGCTGGTTGGTCTGTCAGCGCTGCCTTCATCAACAGAGTAAAATCGTGCCTTTGTGAGCTCCCTCCAAGTCCAGTAGCTATAAATTGTAACACCAGATAATGTGACTTAACCACAGAAATGTGGACCATTATACTGGTAGTTACAGGTGTGGCTCTACAAAACGCTGGCATTTTTTTAGCTAACCTGGTATTGGCGACAATGTGTGTGCCGTCATCTTCTTTTTACAAATCTCTCATTAATCGAGACAGGCTTCTGTCATCCTGGCATGCGGCCCTTTAGGGTAGACCACCCTGTCTCAATCAATGAGAGAAGATTTGAAAAAGACAAGATGGTcgtgtacacatgctgctccaaAGCCTGTACTGTTCTGCCTTCAGAC
>TU825437
CTTTATTGTTAAGTGACAGTAAGAGTCAtctttatcatcatcatcatcattatcacatTAGTCAGTACAAGAACTACAGAACATTaaaatgtcaacaaaaaaaaatcacaacaaaATTCAAGTCTTCATTGTTTCATTTTCATAGCCTATAACCCTGGGCTGTACTGTGTTGTCTATAGCccttaaaaggtcatttaccttTGATGGATGTCTCCTTTGTTTTTACAAGAAAGGGCACACTGTGGTCTAATCGTCTATTGCCATGCTTCCTATTGCTAGATAAGCAGATATCGAAAAGCACAAAAACACTGCGTTTAATACTGCGAGGACAGGAGCCAGAAGCTGACGGAAATATCTCAACAAAAATCAGCCTATGAGACATCTGAGATTATATGGCATTAAACCTGACCTGAGGTCATTGAACCTGACCTGCCCATGTATATTATACAGAACTACATACGTTTCTGCTTGTTAAGAGTGTTTCCTATTCTGAGAAACAGTGCGGTTTTAACAgcatcttttttttaaataatgtactgtacatttatTTTCCATATTTTGAAAATCCCTAGGAACAGGTGTTAATTCACATTTTTCTACTTATTACACAACCTGCATGACAGTACAATTACATGCCCCAAGCTAAGTATGCATACCTGCATGAAGCCTGCACAAATCCTATCACAAGGACTACATTCCACCAATAGCCCCACTATCACACCAGTAAGAATGCATGCCCAATGCAGCGCTTCCATCTAGTATACTACTGTTAGTGAGGATATTGGATCAGAGCCAATCATGTCTCTCCGTCCAGAGCATGGATACATCTTGTACCAGCCAACAGCGAATGGCTATGTTCCAGGTCACAGGTGAAGCCAGCTGGTTGGTCTGTCAGCGCTGCCTTCATCAACAGAGTAAAATCGTGCCTTTGTGAGCTCCCTCCAAGTCCAGTAGCTATAAATTGTAACACCAGATAATGTGACTTAACCACAGAAATGTGGACCATTATACTGGTAGTTACAGGTGTGGCTCTACAAAACGCTGGCATTTTTTTAGCTAACCTGGTATTGGCGACAATGTGTGTGCCGTCATCTTCTTTTTACAAATCTCTCATTAATCGAGACAGGCTTCTGTCATCCTGGCATGCGGCCCTTTAGGGTAGACCACCCTGTCTCAATCAATGAGAGAAGATTTGAAAAAGACAAGATGGTgtacacattgttggattacttcatgGACCAAacaaacattaatttattttaacagAGCGTTTTATCGATTCCAAATGGACTCCCTGAAACTGGACACAGCCATTTTATGAAACGCCTGTTTCCACGATTCGAGGACGAAGATAGTATCGCAAATACCAGGTTAGTTGAAAAATGTCCAGCAACATTTTGTACAGCCACTTCTGTAACTACCAATATAGTGGTCCAAATCTGGTGTTACAATCTGTAGCTACCAGTCCAGGGGATTCAATGTAACATAACTTCCAGCTGATTCAACAAGGccattctccctctcctttcactctctttctcactatgaaaataaaaaaagggaaTATTTTGCAGATGGAACAATCCAGCAATCATGTCGCCGCTACGACTGGGTTTGGCCACAGAGGTAGCGGGTAGAGGAGCAAAGGGTTATTTTTATAAGTCCTATGTTTTGGGTTAGAGTTGTTTGACATTGTGCAATATTAATATTTTCCTCTCTTAAATCCACAAACTATTATCCTGTTTCCTGTATATGCGCTATGATGGTTACAGAGCTAGAAATGACATTTTCAGGCACACTTTATGTCACATAATCCTTATGAATCCTTATACCTGTTACGCGGAGTGGAACCCAGTAGCAGACTCcgacgaggagactgggatgaaataaccaaggtatttattgaaacacaggggggagatggagtgcAGGTCATGGGAAGCTCAGGCGGGTTGCTGGAAACCAGATGAGGGTGcggaggctggagcgagaggggttgagacAGAGTAAGCCGGTCCGGAGGGGATTCCAAGGGGgtagtagagtggggaatccaggacagagtagtaGAATGACAagacgtgggactggagacagggacgaGAGTCACAGCGGGCAGAACTGTAGTGGAGAGGAAAACAGCGGCAGGcaaggaaaacaggcacaacaggatctgaatagtaacaaacggctagaaacgtagactgactgagcagagattacgatctggcagcgtggaagtggcagggctatttgtagaggtcttgattatggaacaggttgcagctggtggggatctgctctgactccagcacacTGTTAAACGTGGAGCTAAAGATCCCCCGTGGAGGGAAGGGGTTTGTCACTGGAAGGCAGCCCGGACGGTTCTGTCGCTGAGGGGCTGAGAGGGGCGGAAGTTGTCTCCCAACATCCCGTCGTTCCCCTCAGGTAGATCAGCACCTTTCAAATGGGACCTGAGCCTCCTGAACT
>TU825439
CTTTATTGTTAAGTGACAGTAAGAGTCAtctttatcatcatcatcatcattatcacatTAGTCAGTACAAGAACTACAGAACATTaaaatgtcaacaaaaaaaaatcacaacaaaATTCAAGTCTTCATTGTTTCATTTTCATAGCCTATAACCCTGGGCTGTACTGTGTTGTCTATAGCccttaaaaggtcatttaccttTGATGGATGTCTCCTTTGTTTTTACAAGAAAGGGCACACTGTGGTCTAATCGTCTATTGCCATGCTTCCTATTGCTAGATAAGCAGATATCGAAAAGCACAAAAACACTGCGTTTAATACTGCGAGGACAGGAGCCAGAAGCTGACGGAAATATCTCAACAAAAATCAGCCTATGAGACATCTGAGATTATATGGCATTAAACCTGACCTGAGGTCATTGAACCTGACCTGCCCATGTATATTATACAGAACTACATACGTTTCTGCTTGTTAAGAGTGTTTCCTATTCTGAGAAACAGTGCGGTTTTAACAgcatcttttttttaaataatgtactgtacatttatTTTCCATATTTTGAAAATCCCTAGGAACAGGTGTTAATTCACATTTTTCTACTTATTACACAACCTGCATGACAGTACAATTACATGCCCCAAGCTAAGTATGCATACCTGCATGAAGCCTGCACAAATCCTATCACAAGGACTACATTCCACCAATAGCCCCACTATCACACCAGTAAGAATGCATGCCCAATGCAGCGCTTCCATCTAGTATACTACTGTTAGTGAGGATATTGGATCAGAGCCAATCATGTCTCTCCGTCCAGAGCATGGATACATCTTGTACCAGCCAACAGCGAATGGCTATGTTCCAGGTCACAGGTGAAGCCAGCTGGTTGGTCTGTCAGCGCTGCCTTCATCAACAGAGTAAAATCGTGCCTTTGTGAGCTCCCTCCAAGTCCAGTAGCTATAAATTGTAACACCAGATAATGTGACTTAACCACAGAAATGTGGACCATTATACTGGTAGTTACAGGTGTGGCTCTACAAAACGCTGGCATTTTTTTAGCTAACCTGGTATTGGCGACAATGTGTGTGCCGTCATCTTCTTTTTACAAATCTCTCATTAATCGAGACAGGCTTCTGTCATCCTGGCATGCGGCCCTTTAGGGTAGACCACCCTGTCTCAATCAATGAGAGAAGATTTGAAAAAGACAAGATGGTgtacacattgttggattacttcatgGACCAAacaaacattaatttattttaacagAGCGTTTTATCGATTCCAAATGGACTCCCTGAAACTGGACACAGCCATTTTATGAAACGCCTGTTTCCACGATTCGAGGACGAAGATAGTATCGCAAATACCAGGTTAGTTGAAAAATGTCCAGCAACATTTTGTACAGCCACTTCTGTAACTACCAATATAGTGGTCCAAATCTGGTGTTACAATCTGTAGCTACCAGTCCAGGGGATTCAATGTAACATAACTTCCAGCTGATTCAACAAGGccattctccctctcctttcactctctttctcactatgaaaataaaaaaagggaaTATTTTGCAGATGGAACAATCCAGCAATCATGTCGCCGCTACGACTGGGTTTGGCCACAGAGGTAGCGGGTAGAGGAGCAAAGGGTTATTTTTATAAGTCCTATGTTTTGGGTTAGAGTTGTTTGACATTGTGCAATATTAATATTTTCCTCTCTTAAATCCACAAACTATTATCCTGTTTCCTGTATATGCGCTATGATGGTTACAGAGCTAGAAATGACATTTTCAGGCACACTTTATGTCACATAATCCTTATGAATCCTTATACCTGTTACGCGGAGTGGAACCCAGTAGCAGACTCcgacgaggagactgggatgaaataaccaaggtatttattgaaacacaggggggagatggagtgcAGGTCATGGGAAGCTCAGGCGGGTTGCTGGAAACCAGATGAGGGTGcggaggctggagcgagaggggttgagacAGAGTAAGCCGGTCCGGAGGGGATTCCAAGGGGgtagtagagtggggaatccaggacagagtagtaGAATGACAagacgtgggactggagacagggacgaGAGTCACAGCGGGCAGAACTGTAGTGGAGAGGAAAACAGCGGCAGGcaaggaaaacaggcacaacaggatctgaatagtaacaaacggctagaaacgtagactgactgagcagagattacgatctggcagcgtggaagtggcagggctatttgtagaggtcttgattatggaacaggttgcagctggtggggatctgctctgactccagcacacctgtctccgcccacaaaatcacacacacagagagagagagagagagagagaaagagtactgggggagtggcggcaggtcaaggagacacaggatgagcagtagagggcgttgcaggagcagatgtgacaataCCAGATTACCAACTGGGTCAATAACATTTAGAATCTGTTGATAAAAACAAcattgcggcaggtagcctagaggttaagagcgttgggccagtaccgAGCCGATTAGGTGGGGGGAAAAACGGTTAAAAACGGCTAAATGACCCAAATGTAAATGTTAGCAAAGACAAAAATAATACAGACTCCAAAAAGATATGGGAACAGTTCTTGTTTTTTCTTAAAGGCACAAAGGAATATCATGGACATAAAACATCACTTATCAGAAGATACAATCTCCACCTATGTATTTTGTTAGTGTATTTGTGTTTTTGCTTGATATGCTGGTTTTtctagttgtttttttttttttttgtattttatttgttgtggCCCATTGGGCGCATGTATAGTTTGGTATACTGTGTGGTTGTTTTGAGTTAAATAGGAAAAAATGTAATGAATGGtctatacaaaatatatatataaaatcactTATGCAATttatttgatgtaattttatcaAGCTAAGTTAGTGCATGCAATTATGCAGTACTGTCAAACCTTTTGTATTTCCATGGTAAACAGTATTGACAATTGGCAGACCCATTTAACTACCTGCATTTACAAATGTGCTACAATGTAATTACATGCATTATTACCTTATGATTAACAAGTAATGGTTTGGTAATGTAATTTAAGGTATTGCTGAATTGTGCAATTTCTCTATCCCTTCAGAACCCCCTTTCTCTATCCCTTCAGAACCCCCTTTCTCTATCCCTTCAGAACCCCCTTTCTCTATccttccttcttcttcctctatTCCTCCTTTTCAAGACCCCTCTCAGGTATGGCCAGGTAATATCCCTTACCAAAGAGACAATACTCCACTATCTCTCCTGCATTTCTCTCTGTAGCTACACTGtttcacagtggtgtaaagtacttaagtatgAATACaataaagtactacttaaatagTTTTTTTGA

Function

NR:

description
uncharacterized protein LOC109870519 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU825438 False 1257 lncRNA 0.41 2 57294624 57361794
TU825437 False 2490 lncRNA 0.44 2 57355520 57361794
TU825439 True 3412 lncRNA 0.41 2 57358323 57361794

Neighbor

gene id symbol gene type direction distance location
LOC110530210 LOC106595335 coding downstream 114196 57175871 ~ 57180428 (-)
LOC110530209 NA coding downstream 148444 57139075 ~ 57146180 (-)
LOC110530205 LOC106568875 coding downstream 262950 57008139 ~ 57031674 (-)
LOC110530203 LOC106568877 coding downstream 347834 56896586 ~ 56946790 (-)
bpnt2 impad1 coding downstream 412792 56871201 ~ 56881832 (-)
LOC110530214 LOC106568870 coding upstream 123447 57485241 ~ 57511592 (-)
si:dkeyp-13a3.10 LOC106568869 coding upstream 153395 57515189 ~ 57532294 (-)
LOC110530221 LOC106568860 coding upstream 279984 57641778 ~ 57720685 (-)
LOC110530224 LOC106568859 coding upstream 440044 57801838 ~ 57803851 (-)
lpar5a LOC106568857 coding upstream 449749 57811543 ~ 57813057 (-)
G726521 NA non-coding downstream 164106 57125014 ~ 57130518 (-)
G726453 NA non-coding downstream 272213 57021681 ~ 57022411 (-)
G726429 NA non-coding downstream 304288 56989964 ~ 56990336 (-)
G726430 NA non-coding downstream 304854 56989121 ~ 56989770 (-)
G726625 NA non-coding upstream 4320 57366114 ~ 57366350 (-)
G726639 NA non-coding upstream 33483 57395277 ~ 57395557 (-)
G726644 NA non-coding upstream 46158 57407952 ~ 57408222 (-)
G726653 NA non-coding upstream 57765 57419559 ~ 57419831 (-)
G726692 NA non-coding upstream 95760 57457554 ~ 57457860 (-)
G726496 NA other downstream 157511 57136141 ~ 57137113 (-)
penka LOC106569009 other downstream 454498 56828799 ~ 56840147 (-)
G725280 LOC106568997 other downstream 705353 56588343 ~ 56589271 (-)
LOC110530186 tm56b other downstream 908108 56374588 ~ 56386555 (-)
G725007 LOC106568897 other downstream 1061685 56219516 ~ 56232939 (-)
G726885 NA other upstream 443594 57805388 ~ 57811422 (-)
G726900 NA other upstream 458253 57820047 ~ 57846689 (-)
LOC110530228 LOC106569007 other upstream 500944 57858233 ~ 57864165 (-)
G731764 NA other upstream 4683241 62045035 ~ 62048119 (-)
LOC110530961 dhx9 other upstream 4818893 62165849 ~ 62185180 (-)

Expression


Co-expression Network