G728967


Basic Information

Item Value
gene id G728967
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59682341 ~ 59690814 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU828002
GCAGAAACAACTTACTAGCTGTCTTTTTCTATTTTTGGGATTTCTAGAAATGTGGTTGTAGTATCAACACTTgtgtatttttttcacccaacagTTCCATTGTCAGTCTGCACGTTTTGGTAGTGGTGGCTTTTACCGTTTTGTTGGAGGAAAGACCATGAGTGTTGTGCTTGCTGAACAATTTCTAAAATGCATGTAACATTTGATACTGAGATCTCACTACTTCCACACAGGACAGGCTATGGTTCTGGAGTGACGGCTCCAAATTTGATCACGAGAGCTGGGCTGAAGGGGAGCCGAATAACCGCAATGGTGCCAGAGAGCCATGTATTCAGATCAACTTTGGCGGTACATTATCATTCATCAAATTAAACTTTTTTGAGCAAGTTTAACAAATAAATGTGACCTACTTTTCTCTTTTCGTGTGTACATCGAGAGGTAATTTCTATTTCGTGTTTCCTCTTAAGCTGAAAACGGCTGGAACGATGAATCATGTGGAAAGAGCTATCCCTCCGTGTGCTCCATAAGAACCTGTTTAATCCTTCAAACTGTCAATTGAAACCAAAAATGCTACTCTGGTGTCAGCATCCTAACTGCAAATGTTTCATGTTATAGTGAATTACTTTGAAGGTATTTGTTGCTGTAAAATACGTTTGACTTGTTGTGTAACTATTGTAGCTTGTCAATAAAACTGGTGTACGTATTTAATCTCATGAGTGGTTATTAAACATTGCTTCACTTTGTTTCTTGAAGAAGCAGTCTGGGTGTCTGTTCAGTGGGCATTTAAATTATTTGATTGTTGATCCATTGTTTCTTGAAGAATAGAATTCTCTTAGGACCCAAAAAGTTGTCTTACTCCACAAACATTAACGTAAACgaacagtgtgtgtatatagcttTAAAATAAGTAgaaaatgatcatgctgttgtcAGAGCACTCTGTGAATTTTAAGTGTTACATTTCCCTACCCCATCTGTTCCctatccaattttatttgtcacgtacacatggttagcagatgctaatgcgagtgtagagaaatgcttgtgcttctagttctaacCATGCAGTAAAATCGAACAAGTTCACATATGtacataaaacaatatatatattcaacCACAAGGGTGTATTAatgaaggggggtgggggggggtgaatTATAATAGAGGCCTACTGAAAGGATATTATTTCAGTGTAGATGAGGGCAGGTTAAAAGAAAAACATGACAGCCAGACAAGCCAGTGACTGAATCAAAAGGATTTACATCTGAATGGAGTGGACATCAGCTTACTTTGATCTGTAAGGTAAGTCACTTTAATGTGTCAAGCAGAATACACGTTTT

Function

NR:

description
ladderlectin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU828002 True 1346 lncRNA 0.38 2 59682341 59690814

Neighbor

gene id symbol gene type direction distance location
LOC110513039 LOC106568836 coding downstream 2723 59675762 ~ 59679618 (-)
LOC110530242 LOC106568841 coding downstream 13898 59416408 ~ 59668443 (-)
LOC110530240 LOC106568842 coding downstream 344152 59286655 ~ 59338189 (-)
LOC110530238 LOC106568844 coding downstream 402804 59249702 ~ 59279537 (-)
LOC110530239 LOC106568843 coding downstream 433472 59214394 ~ 59248869 (-)
LOC118965535 LOC106568836 coding upstream 6423 59697237 ~ 59701083 (-)
LOC110530246 LOC106568836 coding upstream 13531 59704345 ~ 59708192 (-)
LOC118965536 LOC106568836 coding upstream 20688 59711502 ~ 59715308 (-)
LOC118965537 LOC106568836 coding upstream 27804 59718618 ~ 59720310 (-)
LOC110530244 LOC106568836 coding upstream 34611 59725425 ~ 59727118 (-)
G728960 NA non-coding downstream 18967 59663172 ~ 59663374 (-)
G728955 NA non-coding downstream 27003 59655113 ~ 59655338 (-)
G728954 NA non-coding downstream 27432 59654683 ~ 59654909 (-)
G728953 NA non-coding downstream 27991 59654106 ~ 59654350 (-)
G728929 NA non-coding downstream 84439 59597694 ~ 59597902 (-)
G728969 NA non-coding upstream 12476 59703290 ~ 59710991 (-)
G728977 NA non-coding upstream 25675 59716489 ~ 59724668 (-)
G729000 NA non-coding upstream 76865 59767679 ~ 59768045 (-)
G729004 NA non-coding upstream 83030 59773844 ~ 59774151 (-)
LOC110530228 LOC106569007 other downstream 1818464 57858233 ~ 57864165 (-)
G726900 NA other downstream 1835652 57820047 ~ 57846689 (-)
G726885 NA other downstream 1870919 57805388 ~ 57811422 (-)
chd7 LOC106599585 other downstream 2376815 57224058 ~ 57305576 (-)
G726496 NA other downstream 2545228 57136141 ~ 57137113 (-)
G731764 NA other upstream 2354221 62045035 ~ 62048119 (-)
LOC110530961 dhx9 other upstream 2489873 62165849 ~ 62185180 (-)
G735880 NA other upstream 5299487 64990301 ~ 65040241 (-)
G736216 NA other upstream 5827353 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 6410282 66101096 ~ 66101627 (-)

Expression


Co-expression Network