G731383


Basic Information

Item Value
gene id G731383
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 61344610 ~ 61380805 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU830707
ATCTAATATAAtcaatagatagtatagaatacagtatatacatatgagttgagtaatgcaagatgtgtaaacattattaaagtggcattattcaTAATCTGATCCTGAGTTTTATACTCTAGCTCCTCCTACTGACTATGTtgaaacaaatgtattttatatgtaCATTTAATAGCATATGATTTATGCACTGAATACTCCACTTGATGGCGCTGTGGTCAAGCAAAATACATCAGATGCAGGTAAATCTATAACTGACAGGTGACAGGTCTGCATTCTGCTGAGTCAGTGAGTTAAGTGTCACTGGACTTTACAGCACAGTCGTACAGAGCAGTCTCTCACTTCAACAGAGGAGATCTCCAGATCTGTACGGGTCTTCTCTTTGTTCAGTATACCAGTGAGGTGAGAGTATGGAGGTTTAGCTCTCACTACAGTCCTAGAGGCATggtggatgaagaggaggaattgGGGAATTGATCCTGGATGCTGTTTATACCACAGTACACTGTATGCTGAGGAGTAGTTGCAGGAAAGTTGAACATTACTACCCTCCTCTCCATACACTTGGTTTGGCTGCACGGTCTGAAGACTGTCACCTGCTAATGTAAGGAGGTGATGGATAAATCACAAGGTAGATGTATTTGGAATTAGGGAAGATCTTGTTATTTACTctaaaatcccccccaaaaaacagatAAACTATACATTAGCTTAAAAAATTTAGTCAAAAGAATGACAGGTATACAGTCATTTACTAACCTGCCAGAGCAGAAAGTAAAGTAACTGTGTAGAGAACCATCATATTGTAGCTGAAGTTATATACTGGAGGGAAGTCCAACACAGTATTTTAAAGGatcatttattttcatgaaccTACAGTAGGACGCCTCACCCCTGCGCTAAAATATGCATTAGAGGAGTTTATTAGAGAGGTTTCCTGTCACTGTGGGCCTCAGAGCACAGTAGTACAGAGCAGAGTCTGTCACTTCAGCAGAGGAGATCTCCAGATCCACGCTGGTTCTCTCTTTATTCAGATGAACAGACAGTCGAGGGTCATCAGGTTCAGCTCTAAATACAGAGGGCTTTGCTGAGACTGTAGTTTAAAGGATGAATTGCGGTGCTGATCTGGGATATTGACGATACCCTTGAAGAGTCTACTGATCCAGAGTAGTTGCAAGACAATGTAACACTGCTTACCTCC

Function

NR:

description
T-cell receptor alpha chain V region CTL-F3 precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU830707 True 1201 lncRNA 0.41 2 61344610 61380805

Neighbor

gene id symbol gene type direction distance location
LOC110530281 bhlhe22 coding downstream 3399 61340002 ~ 61341211 (-)
LOC110529124 dnajc5b coding downstream 104839 61233873 ~ 61239771 (-)
LOC110530276 LOC106569041 coding downstream 111180 61221771 ~ 61233430 (-)
adhfe1 adhfe1 coding downstream 143613 61189832 ~ 61200997 (-)
si:dkey-97a13.12 LOC106569040 coding downstream 154961 61184985 ~ 61189649 (-)
LOC110530300 NA coding upstream 623367 62004172 ~ 62033993 (-)
LOC110530302 LOC106569065 coding upstream 669098 62049903 ~ 62064021 (-)
LOC110530303 LOC106569067 coding upstream 687192 62067997 ~ 62145625 (-)
LOC110530961 dhx9 coding upstream 785044 62165849 ~ 62185180 (-)
LOC110530304 LOC106569068 coding upstream 804937 62185742 ~ 62275234 (-)
G731381 NA non-coding downstream 1433 61342794 ~ 61343177 (-)
G731375 NA non-coding downstream 19085 61325226 ~ 61325525 (-)
G731367 NA non-coding downstream 34525 61309575 ~ 61310085 (-)
G731365 NA non-coding downstream 38061 61306320 ~ 61306549 (-)
G731344 NA non-coding downstream 47426 61295363 ~ 61297184 (-)
G731412 NA non-coding upstream 5748 61386553 ~ 61436469 (-)
G731439 NA non-coding upstream 44505 61425310 ~ 61478476 (-)
G731440 NA non-coding upstream 46178 61426983 ~ 61427303 (-)
G731441 NA non-coding upstream 49293 61430098 ~ 61468722 (-)
G731447 NA non-coding upstream 54579 61435384 ~ 61438529 (-)
LOC110530228 LOC106569007 other downstream 3480733 57858233 ~ 57864165 (-)
G726900 NA other downstream 3497921 57820047 ~ 57846689 (-)
G726885 NA other downstream 3533188 57805388 ~ 57811422 (-)
chd7 LOC106599585 other downstream 4039084 57224058 ~ 57305576 (-)
G726496 NA other downstream 4207497 57136141 ~ 57137113 (-)
G731764 NA other upstream 664230 62045035 ~ 62048119 (-)
G735880 NA other upstream 3609496 64990301 ~ 65040241 (-)
G736216 NA other upstream 4137362 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 4720291 66101096 ~ 66101627 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016601 tradv24.0.2 coding NC_007113.7 CM002886.2 36276985 ~ 36277780 (-)