G733454


Basic Information

Item Value
gene id G733454
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 63463954 ~ 63466390 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU832942
TTTTGTTAGTTAAATTCGTATAGAAGGTGAGGGAAAATAATGGTCACACAAGGGTTTTCTTGAGCATAGTTTTCGGAAGTCACAGTGTTTTAGACATCGACAAAAAGAGTACAACTTCAAATCATTAAATGAAGAAGGAAAGGTAAGGAAACGTAACATGGTGGACAGTGTCTGCCACACCTCTCCTTCATTTTCCAAGTGTACCCTTCTctccaaaaaacaaaaacaaaacagggtCTGTCTGAAACCCCCCCTACTCATTGTGGACaactccctcccactccccccaccccccctcccccgctCTCCCACCCCTCACAAAAATAATAGcaaccaaacaaacaaaaacaacaaaaaacaaatctGTAACAAtagatataattatatataatatatatttactCTTTAAAAATAGAACTTCAGTCTAGTGACTAACATCTGTACAAACTACAAAAATAAAATTTTATATAAATAATTTATATGGCATGACACACATTTGAACGAACCCCCACCCTCCCACTCATATAACTTACACACTCAGGTATTTCTGTATTGAAGCAGTGAATGAATGTAGGTTGTTCTCTTATTATTTTGTTGTTTACTTCCAGAATGCACAGTAGCTACTTTATTTTTCTTTCATAACTCTATGTACCAAAGAAACCCAAGCTGCCACCTAAATCTATTACATTTCCCTGCATTTAAATTGGCAGTGATGTGACCAATACTGAACGACTGAACTTTGTCCATAATACAAACGTACAAATTAAACAAAAACTAAATCACAGAAATGCTGGCTTGCATGTGAGCTACAACGacgtgagagagcgagagagagagagagagagacagtaagtgGTTCTTGGAGTAGTTCTCTGCACAAAATGCACTACCTAGTCAACAATTGCACAGGGTTGAAATAATGTCTACCACAAACCTAAAGCAGCCAAAACATTTAAGAGAAAACAAAAACCTCCCTTTGCATTTGATATAAATTCCCTTTCAGAATAAAATTGGGTAAACAACCAGCATTAGTCAAATATTACCCCTTAGACCCCAGTTGAGTTGGAGGACGAGGGGGGGGATGACAAAGTTAGCCTTACCCAATGTACAGCTTAGATAACCCCAGGAAAGAAAAAAAACTCTTCTCATAGCTCCTTCAAGTAATAAAACATGTAGACTGCAAAATAACAACGAGACAACGATCATAATGCAACATGCCAGTGAGCTGGGACACAATGAACGACGCTCAAGAAACTTCAACCCAAAGTGACACCAAGTCAAGTTGCTGACtgcatacagacatacagagctACAGGTGATTGAAATGGACCAATACATGGTAATATATTAATTTACTGTCTGAACACGGGCTTTATTCTGGATGAGCAGCCTGTGTATTATGGAAGAAACCAAAGGAGAATATGCTATTGTTTTGCTAATAGTATTTGCATCATATCACACCAGTAAATGAAAACACGTCTTGTACATATCAGGGGATTCTTAACATGAAAAAAAAGGTATGAAATTATGCTCTCAAACAAACAGGacaaatatcatatttacatccAACTTTGAATATATATACTGTGCTTATGAATTCCAAGAGGGTAGGTGTTGTGAAGGCACAATGGTTGTTATTGGTAGAAGAGGAAGAAAAGATTTACTGAGCTTGTTTGTATTTGTACAGTGCAATCAATGACCAACAATGGATCATCTGAATAGATcatagctagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttacggagCTTAATCAATAAGGCACCCTCCACTCTCAGTGTAAGAACATCTAGAATATCTCAAGTTAATTCTCAACTTAGATcggggggaggggggtactgcaaattatttcaattttttttaagtgtagcagcaaaaaaacaaacactggCCTTGTATTTTCAACAACCTAATATCTTAATAACCCCTGACTCTGAACTGTTTTACATATAGCATCTTCTAAATCTATACAAAgggaggacccccccccccccccaatcatcTTATATATCTGACTCTACACAAGAGAATAGCCAAGTTATACAGTACTCTTTTAAATAGTTGTTTCCCTCTTTTTAGTATTAAAATATATactcatatatttatatattcttaaaaCAAGACCTTTTTTTAATATCTTTACAAATAAATCCTCTTGTCTGTGTGAGGTCTATGTACAGATCAAAGAGAACGGGCTGGGTATCGGAGGCAGCCAGAGAAGGATTCCAGACATAGGGGCAGGGTGGGGTAGCAGGGTGTCTAGCAATCTTTGGCTGCCTGGATCCATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU832942 True 2321 lncRNA 0.38 3 63463954 63466390

Neighbor

gene id symbol gene type direction distance location
LOC110530314 LOC106569080 coding downstream 169251 63292443 ~ 63294703 (-)
LOC110530312 tnn coding downstream 224124 63209032 ~ 63239830 (-)
LOC110530309 LOC106569072 coding downstream 496469 62882950 ~ 62967485 (-)
LOC110530307 LOC106569071 coding downstream 856188 62513304 ~ 62607766 (-)
LOC110530306 LOC106569070 coding downstream 1151461 62299897 ~ 62312493 (-)
LOC110530317 LOC106569084 coding upstream 9402 63475792 ~ 63494725 (-)
kiss1ra LOC106569085 coding upstream 81189 63547579 ~ 63561814 (-)
LOC110530962 LOC106569119 coding upstream 305293 63771683 ~ 63777609 (-)
slc6a9 LOC106569088 coding upstream 336451 63802841 ~ 63885395 (-)
klf17 LOC106569090 coding upstream 423287 63889677 ~ 63892473 (-)
G733504 LOC106599390 non-coding downstream 10058 63453675 ~ 63453896 (-)
G733501 NA non-coding downstream 11576 63452156 ~ 63452378 (-)
G733499 NA non-coding downstream 12551 63451204 ~ 63451403 (-)
G733498 NA non-coding downstream 13163 63450567 ~ 63450791 (-)
G733497 NA non-coding downstream 16431 63447186 ~ 63447523 (-)
G733481 NA non-coding upstream 37039 63503429 ~ 63503662 (-)
G733479 NA non-coding upstream 39275 63505665 ~ 63505981 (-)
G733480 NA non-coding upstream 39717 63506107 ~ 63518354 (-)
G733537 NA non-coding upstream 53507 63519897 ~ 63520201 (-)
G733540 NA non-coding upstream 56120 63522510 ~ 63522793 (-)
LOC110530961 dhx9 other downstream 1278774 62165849 ~ 62185180 (-)
G731764 NA other downstream 1415835 62045035 ~ 62048119 (-)
LOC110530228 LOC106569007 other downstream 5600077 57858233 ~ 57864165 (-)
G726900 NA other downstream 5617265 57820047 ~ 57846689 (-)
G726885 NA other downstream 5652532 57805388 ~ 57811422 (-)
G735880 NA other upstream 1523911 64990301 ~ 65040241 (-)
G736216 NA other upstream 2051777 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 2634706 66101096 ~ 66101627 (-)
LOC110530385 LOC106569212 other upstream 2727264 66192359 ~ 66210028 (-)
G737449 LOC106569204 other upstream 3092806 66559196 ~ 66560517 (-)

Expression


Co-expression Network