G733480


Basic Information

Item Value
gene id G733480
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 63506107 ~ 63518354 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU832971
TCTGGGTGTGGTTTTAAAACTTCTGTGAATGATGTGTATGCCTTTGACTCAGTCCCTAACttaaagaggggaggaggagcgCACTAGTTGGAGCACAGTTTGAGCTTGGGGTTGCATTGGAGCTAAGGAGCAACATGTATGATCCACTGCATTCTCTCTTTAACCAATGGCTTTGGGATCACCACACTAAGTTCATATAAAGATCATTGGGCTTTAATCAATCCCAAATGGAAGCTGGCAGTACTTTTGTTATGGATCTCAGAGTTTTAGAAAATTTCCAACATAGACAACATCTTGAAGcctctctcccctctctctctttctctctctccatcttacaTGGGGCAGCCAGTGGGATTCCTGGCAGAGTGATTTGGTATTGTATCATAAAATCACATTGCCAGGGATTTCCAACCAGCTGCATGCCACACTCTTCAACATCATCCCCATCCAATCCTGCTGGAGCCTGTTGCCTACTCAACCTTTGTCTACCGTCCCTATGCTACATGTTCCTTCAGAAGGTCACTGGGGATGGGGATCACAACTATTGAGGCCAATGGCTCTCATGTTCAGGATATAGCTAACGGCCCCAGACAAGCATTCTTTGCTACAAATGTGAAATGTTCCTCAACATCTAATTGTGGTTTCCCAGTCACTTGTGCAGTCTCAACAACCCGCTCTGAACTGGTAAATATATTCTAGCACTTTATTCATGCAGGAATAAAACACACAGAATATTATCCCTAAGCCATCTTCTCCAAATATCTCCACCAGCAGCCGTAACACAATGCTTATCCATAGCTGAAAGATCGAAATTTCtggataaaaaaagaaaaaaacgtGCATACCAAAATATGTGAACATACAAGAGAGATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU832971 True 876 lncRNA 0.43 3 63506107 63518354

Neighbor

gene id symbol gene type direction distance location
LOC110530317 LOC106569084 coding downstream 11382 63475792 ~ 63494725 (-)
LOC110530314 LOC106569080 coding downstream 211404 63292443 ~ 63294703 (-)
LOC110530312 tnn coding downstream 266277 63209032 ~ 63239830 (-)
LOC110530309 LOC106569072 coding downstream 538622 62882950 ~ 62967485 (-)
LOC110530307 LOC106569071 coding downstream 898341 62513304 ~ 62607766 (-)
kiss1ra LOC106569085 coding upstream 29225 63547579 ~ 63561814 (-)
LOC110530962 LOC106569119 coding upstream 253329 63771683 ~ 63777609 (-)
slc6a9 LOC106569088 coding upstream 284487 63802841 ~ 63885395 (-)
klf17 LOC106569090 coding upstream 371323 63889677 ~ 63892473 (-)
LOC110530324 LOC106599374 coding upstream 466975 63985329 ~ 64157280 (-)
G733479 NA non-coding downstream 126 63505665 ~ 63505981 (-)
G733481 NA non-coding downstream 2445 63503429 ~ 63503662 (-)
G733454 NA non-coding downstream 39717 63463954 ~ 63466390 (-)
G733504 LOC106599390 non-coding downstream 52211 63453675 ~ 63453896 (-)
G733501 NA non-coding downstream 53729 63452156 ~ 63452378 (-)
G733537 NA non-coding upstream 1543 63519897 ~ 63520201 (-)
G733540 NA non-coding upstream 4156 63522510 ~ 63522793 (-)
G733806 NA non-coding upstream 25890 63544244 ~ 63545881 (-)
G733809 NA non-coding upstream 33106 63551460 ~ 63553160 (-)
G733841 atp6v0b non-coding upstream 84910 63603264 ~ 63612708 (-)
LOC110530961 dhx9 other downstream 1320927 62165849 ~ 62185180 (-)
G731764 NA other downstream 1457988 62045035 ~ 62048119 (-)
LOC110530228 LOC106569007 other downstream 5642230 57858233 ~ 57864165 (-)
G726900 NA other downstream 5659418 57820047 ~ 57846689 (-)
G726885 NA other downstream 5694685 57805388 ~ 57811422 (-)
G735880 NA other upstream 1471947 64990301 ~ 65040241 (-)
G736216 NA other upstream 1999813 65518167 ~ 65528583 (-)
G736841 LOC106569214 other upstream 2582742 66101096 ~ 66101627 (-)
LOC110530385 LOC106569212 other upstream 2675300 66192359 ~ 66210028 (-)
G737449 LOC106569204 other upstream 3040842 66559196 ~ 66560517 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015605 dre-mir-23a-3 non-coding NC_007113.7 CM002886.2 33900435 ~ 33900512 (+)