XLOC_026352


Basic Information

Item Value
gene id XLOC_026352
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 25984634 ~ 25988334 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053022
TGAACACTGAACTTTAAGTGACACATTCAACTTTTCGACATGGAagtcaacaacaataacaactcaGGTAAAATAACTGCATTTCTATGGCGGTCTCTAAGAAGAGCCCGGACATTCTTTATCTGTGGACAAAACTCAGTTCCTCTCTCAGTGGAGGAAACAGCGCCATCTATTAGTCAGAGCTCTGTACGACCATGGAACTACGGCGAGGCTGCAGGGTTCATGAGAACTACCTAAGACTTGGAtggagatgaagaaaaaaagtttCAGAGATGGTGGACTGGCTCCCTTGAAATTATGAAACCTATGTAACAATGTTATAGCGGGACCTGTTGTCAAGAGCTGGGACAGTTGCTGGTGCTCTCGCTTCATGTGAAAGAGGAGTTCTGGACTATTAAGGTTGTTTTGAACCATGCAGAAAAGCGTAAGAGCCGAATCCTGTCTGTGGGTAATAGGGAGTCCTGCTATCAGAATGTTTTCCCCAAGGTTTGGCCAACAGTGATGAGATTTAtgtcaaaaattaaaacaaaatttcaTTAATTAATCAGTCGCAAGCAAGAATATTAACCTGGGCTGATATAGAGCACACAGCTGAgtaatttacattatatattaaagTTCAACCAGAGAATTGCTAAAGCCAGTGAGGAAGAATGTTTAGACAGATCTCCATGTTATCAATGCATTCACAGTTTGATTGTAATTATAATGTACAGTTACAGTGTTTTCACATTTATTCTGATGGAAAGTTTCATTTTGAGGAATATTTACTTCACTTTATCTTTCTTTATCTTACATTTCATAAATATTCTTCGCTCCTCAATTTCTCTGCGATTATGGCAGTGGTTATGTCAGATAGGCAGTGCTGGGTAGATTACTTGCATATTGTAGTATAATTACATGATCACACTGACAAAGAAAAATGATGTCGAAATTTTACACGTTTAAGCAAACCCACACCATgctggcacggtggcttagtggatagcactgtcaccacacagcaagaaggttgctggttcgagtcccagctgggtcatttggcatttctgcatggagtttgcatgttctcccattattggcatgggtttcctcttggtgctttggtttcccccacaagcccaaagacatgcactataggtggaatgaataagctaaattggccatagtgtatgtgtgaatgagagagtggtgtttcccagtgatgggtagcgGCTGAAacagcatccgctgtgtaaaacatgtgctggaatagttgcaggttcattccgctgtggtgaccgttgataaataaggcactaagccgtaggagaatgaatgaaatgtGAGCATGTGAGATTAATTATTGTAATAGTAATTTTTAAATTATCTTTACAATTAAAAACAGAGTTTATTTAAATGTGAAACCTTTAAAGTTATagcttacttaaaaaaaatatataaaaatatatatatttgaaatgaatTGCTCTCCTAATGTTCAGTAAGCATGTCaagataattatattaaaatgtttcatCCGTAAGTTATGAGTTGAGGTGAGAACAACTCAAAATGTAAAGCAGTAGGATTTTGTAgaaagcatatttttaaaaatgaaattaggaTTTAGCAAAATCACTAAATTATGATCAATTTATTAcctttgtgtaatattaatatcatCATAATCATGTAATGCATAAAGTAAGTTTAATGATGCACACCAAATTGGTCACGTATGTTCAAATCAGTTTAGACATAGCTTGAGCTTGCACAGGATTTGACTGAATGACAAATGTTAGTATTGTCGTTGCAAATAagtattgtgtatataaaaaaacaaaaccacatgCATGATTTTACCTGTTTTCTAACTGAAACTGCTGTAAACAAGAAAGGGATCAGTTATGGCTTGAATGCATAACTTGGGAATGCAAACCAGTGCCTCATGTATAATTTCTGCTTCAGCTCTTAAATGATAATTGCAATGCTTGCTTTGTTTTAACACTTGTTTTCATATCAATAAGCAATTATCCATAAGCATCCTTATTGACATTTTTGTCGATTGCATTATTTCTAACTTTCAGTTTGGCATATTTGCTTTTTTTACACAAACATCAGTTGTTTTGGCAAAATGGACATTTTTGTGTCACACTGTTTGGATTTAATTTGCTTGCCAGTCCGTGTTAATAAATGCCTGATTGTGTATCACTTGTTGGATTTCTGCTCTTTATTGTGAtggtttttgtcattttgttaattattatttttgcaatgtcattcttaaaataatgcattaaattagTGTTTTTTAGTCATTAAATGATCCA
>TCONS_00053023
AAATACAAACTTCATGTTGTGCTCGGAGAACAACTGAACACTGAACTTTAAGTGACACATTCAACTTTTCGACATGGAagtcaacaacaataacaactcaGGTAAAATAACTGCATTTCTATGGCGGTCTCTAAGAAGAGCCCGGACATTCTTTATCTGTGGACAAAACTCAGTTCCTCTCTCAGTGGAGGAAACAGCGCCATCTATTAGTCAGAGCTCTGTACGACCATGGAACTACGGCGAGGCTGCAGGGTTCATGAGAACTACCTAAGAAGACTTGGAtggagatgaagaaaaaaagtttCAGAGATGGTGGACTGGCTCCCTTGAAATTATGAAACCTATGTAACAATGTTATAGCGGGACCTGTTGTCAAGAGCTGGGACAGTTGCTGGTGCTCTCGCTTCATGTGAAAGAGGAGTTCTGGACTATTAAGGTTGTTTTGAACCATGCAGAAAAGCGTAAGAGCCGAATCCTGTCTGTGGGTAATAGGGAGTCCTGCTATCAGAATGTTTTCCCCAAGGTTTGGCCAACAGTGATGAGATTTAtgtcaaaaattaaaacaaaatttcaTTAATTAATCAGTCGCAAGCAAGAATATTAACCTGGGCTGATATAGAGCACACAGCTGAgtaatttacattatatattaaagTTCAACCAGAGAATTGCTAAAGCCAGTGAGGAAGAATGTTTAGACAGATCTCCATGTTATCAATGCATTCACAGTTTGATTGTAATTATAATGTACAGTTACAGTGTTTTCACATTTATTCTGATGGAAAGTTTCATTTTGAGGAATATTTACTTCACTTTATCTTTCTTTATCTTACATTTCATAAATATTCTTCGCTCCTCAATTTCTCTGCGATTATGGCAGTGGTTATGTCAGATAGGCAGTGCTGGGTAGATTACTTGCATATTGTAGTATAATTACATGATCACACTGACAAAGAAAAATGATGTCGAAATTTTACACGTTTAAGCAAACCCACACCATgctggcacggtggcttagtggatagcactgtcaccacacagcaagaaggttgctggttcgagtcccagctgggtcatttggcatttctgcatggagtttgcatgttctcccattattggcatgggtttcctcttggtgctttggtttcccccacaagcccaaagacatgcactataggtggaatgaataagctaaattggccatagtgtatgtgtgaatgagagagtggtgtttcccagtgatgggtagcgGCTGAAacagcatccgctgtgtaaaacatgtgctggaatagttgcaggttcattccgctgtggtgaccgttgataaataaggcactaagccgtaggagaatgaatgaaatgtGAGCATGTGAGATTAATTATTGTAATAGTAATTTTTAAATTATCTTTACAATTAAAAACAGAGTTTATTTAAATGTGAAACCTTTAAAGTTATagcttacttaaaaaaaatatataaaaatatatatatttgaaatgaatTGCTCTCCTAATGTTCAGTAAGCATGTCaagataattatattaaaatgtttcatCCGTAAGTTATGAGTTGAGGTGAGAACAACTCAAAATGTAAAGCAGTAGGATTTTGTAgaaagcatatttttaaaaatgaaattaggaTTTAGCAAAATCACTAAATTATGATCAATTTATTAcctttgtgtaatattaatatcatCATAATCATGTAATGCATAAAGTAAGTTTAATGATGCACACCAAATTGGTCACGTATGTTCAAATCAGTTTAGACATAGCTTGAGCTTGCACAGGATTTGACTGAATGACAAATGTTAGTATTGTCGTTGCAAATAagtattgtgtatataaaaaaacaaaaccacatgCATGATTTTACCTGTTTTCTAACTGAAACTGCTGTAAACAAGAAAGGGATCAGTTATGGCTTGAATGCATAACTTGGGAATGCAAACCAGTGCCTCATGTATAATTTCTGCTTCAGCTCTTAAATGATAATTGCAATGCTTGCTTTGTTTTAACACTTGTTTTCATATCAATAAGCAATTATCCATAAGCATCCTTATTGACATTTTTGTCGATTGCATTATTTCTAACTTTCAGTTTGGCATATTTGCTTTTTTTACACAAACATCAGTTGTTTTGGCAAAATGGACATTTTTGTGTCACACTGTTTGGATTTAATTTGCTTGCCAGTCCGTGTTAATAAATGCCTGATTGTGTATCACTTGTTGGATTTCTGCTCTTTATTGTGAtggtttttgtcattttgttaattattatttttgcaatgtcattcttaaaataatgcattaaattagTGTTTTTTAGTCATTAAATGATCCA
>TCONS_00053024
CACTCGTGTGCAATGCAGTAACAGCGCTGTGCAGACATCAGTGCAGTGTAAATGAAGGACTGGCGATGATGCTTGGACTTAAATCAGTGCGGAAACAAAGTTTATGCGATCTGTTTTCCCCCAGTGAAGTGAGAGATGGGGTAACTTAAAACGGTAAAATAACTGCATTTCTATGGCGGTCTCTAAGAAGAGCCCGGACATTCTTTATCTGTGGACAAAACTCAGTTCCTCTCTCAGTGGAGGAAACAGCGCCATCTATTAGTCAGAGCTCTGTACGACCATGGAACTACGGCGAGGCTGCAGGGTTCATGAGAACTACCTAAGACTTGGAtggagatgaagaaaaaaagtttCAGAGATGGTGGACTGGCTCCCTTGAAATTATGAAACCTATGTAACAATGTTATAGCGGGACCTGTTGTCAAGAGCTGGGACAGTTGCTGGTGCTCTCGCTTCATGTGAAAGAGGAGTTCTGGACTATTAAGGTTGTTTTGAACCATGCAGAAAAGCGTAAGAGCCGAATCCTGTCTGTGGGTAATAGGGAGTCCTGCTATCAGAATGTTTTCCCCAAGGTTTGGCCAACAGTGATGAGATTTAtgtcaaaaattaaaacaaaatttcaTTAATTAATCAGTCGCAAGCAAGAATATTAACCTGGGCTGATATAGAGCACACAGCTGAgtaatttacattatatattaaagTTCAACCAGAGAATTGCTAAAGCCAGTGAGGAAGAATGTTTAGACAGATCTCCATGTTATCAATGCATTCACAGTTTGATTGTAATTATAATGTACAGTTACAGTGTTTTCACATTTATTCTGATGGAAAGTTTCATTTTGAGGAATATTTACTTCACTTTATCTTTCTTTATCTTACATTTCATAAATATTCTTCGCTCCTCAATTTCTCTGCGATTATGGCAGTGGTTATGTCAGATAGGCAGTGCTGGGTAGATTACTTGCATATTGTAGTATAATTACATGATCACACTGACAAAGAAAAATGATGTCGAAATTTTACACGTTTAAGCAAACCCACACCATgctggcacggtggcttagtggatagcactgtcaccacacagcaagaaggttgctggttcgagtcccagctgggtcatttggcatttctgcatggagtttgcatgttctcccattattggcatgggtttcctcttggtgctttggtttcccccacaagcccaaagacatgcactataggtggaatgaataagctaaattggccatagtgtatgtgtgaatgagagagtggtgtttcccagtgatgggtagcgGCTGAAacagcatccgctgtgtaaaacatgtgctggaatagttgcaggttcattccgctgtggtgaccgttgataaataaggcactaagccgtaggagaatgaatgaaatgtGAGCATGTGAGATTAATTATTGTAATAGTAATTTTTAAATTATCTTTACAATTAAAAACAGAGTTTATTTAAATGTGAAACCTTTAAAGTTATagcttacttaaaaaaaatatataaaaatatatatatttgaaatgaatTGCTCTCCTAATGTTCAGTAAGCATGTCaagataattatattaaaatgtttcatCCGTAAGTTATGAGTTGAGGTGAGAACAACTCAAAATGTAAAGCAGTAGGATTTTGTAgaaagcatatttttaaaaatgaaattaggaTTTAGCAAAATCACTAAATTATGATCAATTTATTAcctttgtgtaatattaatatcatCATAATCATGTAATGCATAAAGTAAGTTTAATGATGCACACCAAATTGGTCACGTATGTTCAAATCAGTTTAGACATAGCTTGAGCTTGCACAGGATTTGACTGAATGACAAATGTTAGTATTGTCGTTGCAAATAagtattgtgtatataaaaaaacaaaaccacatgCATGATTTTACCTGTTTTCTAACTGAAACTGCTGTAAACAAGAAAGGGATCAGTTATGGCTTGAATGCATAACTTGGGAATGCAAACCAGTGCCTCATGTATAATTTCTGCTTCAGCTCTTAAATGATAATTGCAATGCTTGCTTTGTTTTAACACTTGTTTTCATATCAATAAGCAATTATCCATAAGCATCCTTATTGACATTTTTGTCGATTGCATTATTTCTAACTTTCAGTTTGGCATATTTGCTTTTTTTACACAAACATCAGTTGTTTTGGCAAAATGGACATTTTTGTGTCACACTGTTTGGATTTAATTTGCTTGCCAGTCCGTGTTAATAAATGCCTGATTGTGTATCACTTGTTGGATTTCTGCTCTTTATTGTGAtggtttttgtcattttgttaattattatttttgcaatgtcattcttaaaataatgcattaaattagTGTTTTTTAGTCATTAAATGATCCA
>TCONS_00051385
CAAATCATCACTCGTGTGCAATGCAGTAACAGCGCTGTGCAGACATCAGTGCAGTGTAAATGAAGGACTGGCGATGATGCTTGGACTTAAATCAGTGCGGAAACAAAGTTTATGCGATCTGTTTTCCCCCAGTGAAGTGAGAGATGGGGTAACTTAAAACGGTAAAATAACTGCATTTCTATGGCGGTCTCTAAGAAGAGCCCGGACATTCTTTATCTGTGGACAAAACTCAGTTCCTCTCTCAGTGGAGGAAACAGCGCCATCTATTAGTCAGAGCTCTGTACGACCATGGAACTACGGCGAGGCTGCAGGGTTCATGAGAACTACCTAAGAAGACTTGGAtggagatgaagaaaaaaagtttCAGAGATGGTGGACTGGCTCCCTTGAAATTATGAAACCTATGTAACAATGTTATAGCGGGACCTGTTGTCAAGAGCTGGGACAGTTGCTGGTGCTCTCGCTTCATGTGAAAGAGGAGTTCTGGACTATTAAGGTTGTTTTGAACCATGCAGAAAAGCGTAAGAGCCGAATCCTGTCTGTGGGTAATAGGGAGTCCTGCTATCAGAATGTTTTCCCCAAGGTTTGGCCAACAGTGATGAGATTTAtgtcaaaaattaaaacaaaatttcaTTAATTAATCAGTCGCAAGCAAGAATATTAACCTGGGCTGATATAGAGCACACAGCTGAgtaatttacattatatattaaagTTCAACCAGAGAATTGCTAAAGCCAGTGAGGAAGAATGTTTAGACAGATCTCCATGTTATCAATGCATTCACAGTTTGATTGTAATTATAATGTACAGTTACAGTGTTTTCACATTTATTCTGATGGAAAGTTTCATTTTGAGGAATATTTACTTCACTTTATCTTTCTTTATCTTACATTTCATAAATATTCTTCGCTCCTCAATTTCTCTGCGATTATGGCAGTGGTTATGTCAGATAGGCAGTGCTGGGTAGATTACTTGCATATTGTAGTATAATTACATGATCACACTGACAAAGAAAAATGATGTCGAAATTTTACACGTTTAAGCAAACCCACACCATgctggcacggtggcttagtggatagcactgtcaccacacagcaagaaggttgctggttcgagtcccagctgggtcatttggcatttctgcatggagtttgcatgttctcccattattggcatgggtttcctcttggtgctttggtttcccccacaagcccaaagacatgcactataggtggaatgaataagctaaattggccatagtgtatgtgtgaatgagagagtggtgtttcccagtgatgggtagcgGCTGAAacagcatccgctgtgtaaaacatgtgctggaatagttgcaggttcattccgctgtggtgaccgttgataaataaggcactaagccgtaggagaatgaatgaaatgtGAGCATGTGAGATTAATTATTGTAATAGTAATTTTTAAATTATCTTTACAATTAAAAACAGAGTTTATTTAAATGTGAAACCTTTAAAGTTATagcttacttaaaaaaaatatataaaaatatatatatttgaaatgaatTGCTCTCCTAATGTTCAGTAAGCATGTCaagataattatattaaaatgtttcatCCGTAAGTTATGAGTTGAGGTGAGAACAACTCAAAATGTAAAGCAGTAGGATTTTGTAgaaagcatatttttaaaaatgaaattaggaTTTAGCAAAATCACTAAATTATGATCAATTTATTAcctttgtgtaatattaatatcatCATAATCATGTAATGCATAAAGTAAGTTTAATGATGCACACCAAATTGGTCACGTATGTTCAAATCAGTTTAGACATAGCTTGAGCTTGCACAGGATTTGACTGAATGACAAATGTTAGTATTGTCGTTGCAAATAagtattgtgtatataaaaaaacaaaaccacatgCATGATTTTACCTGTTTTCTAACTGAAACTGCTGTAAACAAGAAAGGGATCAGTTATGGCTTGAATGCATAACTTGGGAATGCAAACCAGTGCCTCATGTATAATTTCTGCTTCAGCTCTTAAATGATAATTGCAATGCTTGCTTTGTTTTAACACTTGTTTTCATATCAATAAGCAATTATCCATAAGCATCCTTATTGACATTTTTGTCGATTGCATTATTTCTAACTTTCAGTTTGGCATATTTGCTTTTTTTACACAAACATCAGTTGTTTTGGCAAAATGGACATTTTTGTGTCACACTGTTTGGATTTAATTTGCTTGCCAGTCCGTGTTAATAAATGCCTGATTGTGTATCACTTGTTGGATTTCTGCTCTTTATTGTGAtggtttttgtcattttgttaattattatttttgcaatgtcattcttaaaataatgcattaaattagTGTTTTTTAGTCATTAAATGATCCA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0021575 hindbrain morphogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0048880 sensory system development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0098742 cell-cell adhesion via plasma-membrane adhesion molecules biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0001654 eye development biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0007423 sensory organ development biological_process
GO:0022008 neurogenesis biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0150063 visual system development biological_process
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053022 False 2313 lncRNA 0.36 4 25984634 25987554
TCONS_00053023 False 2350 lncRNA 0.36 4 25984634 25987588
TCONS_00053024 False 2399 lncRNA 0.36 4 25984634 25988326
TCONS_00051385 True 2410 lncRNA 0.36 4 25984634 25988334

Neighbor

gene id symbol gene type direction distance location
XLOC_026351 NA coding downstream 10552 25951225 ~ 25974082 (-)
XLOC_026350 NA coding downstream 34244 25940208 ~ 25950390 (-)
XLOC_026349 ntn1b coding downstream 170537 25708549 ~ 25814097 (-)
XLOC_026348 NA coding downstream 283416 25682884 ~ 25701218 (-)
XLOC_026347 usp43b coding downstream 338485 25546672 ~ 25646149 (-)
XLOC_026353 hmox1a coding upstream 23148 26011482 ~ 26017831 (-)
XLOC_026354 NA coding upstream 81934 26070268 ~ 26076085 (-)
XLOC_026355 zgc:162612 coding upstream 119699 26108033 ~ 26109322 (-)
XLOC_026356 hsp70.1 coding upstream 124446 26112780 ~ 26115559 (-)
XLOC_026357 hsp70.2 coding upstream 131269 26119603 ~ 26122353 (-)
XLOC_026339 BX470254.1 non-coding downstream 849525 25132020 ~ 25135109 (-)
XLOC_026332 BX569789.2 non-coding downstream 1238753 24745766 ~ 24745881 (-)
XLOC_026358 NA non-coding upstream 139182 26127516 ~ 26129342 (-)
XLOC_026359 NA non-coding upstream 147158 26135492 ~ 26144691 (-)
XLOC_026362 NA non-coding upstream 197819 26186153 ~ 26191960 (-)
XLOC_026366 NA non-coding upstream 294435 26282769 ~ 26283893 (-)

Expression


Co-expression Network