G738478 (LOC106569192)


Basic Information

Item Value
gene id G738478
gene name LOC106569192
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67389358 ~ 67390228 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU838550
TAcggcttcctcttcctcttcttgcTGTCGTCGGCCCCCTTGGACTTGTCTTCTGCTGGCTCTCGCTCCGGGCTCGAGTCAGACTTCCCTTCGCAGTCCAGAGAAAGGTCCGCACCTCTGTGGTCCTCCATGTCCTCGTCCCGGGAGTGTTCTGACAGCAGGTCCAGGGGGGCCTGCAGCACTGCCACACTATTCTGGTTGATGATCTTCAGCTTCAGCTTGGGCTTGGGTTTCCTACGCCGCGACGCAGGGGCCGACAGGCTCTGGAGCTGACACCGGCCCGACTCCGTCAGACACACACCGTCCTGAGTGTACGTCCTCGC

Function

NR:

description
histone-lysine N-methyltransferase 2C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU838550 True 323 lncRNA 0.62 2 67389358 67390228

Neighbor

gene id symbol gene type direction distance location
LOC110530968 LOC106569194 coding downstream 213190 67055158 ~ 67176168 (-)
gs02 gs02 coding downstream 587579 66798543 ~ 66801779 (-)
elovl1a LOC106569200 coding downstream 706411 66672460 ~ 66682947 (-)
LOC110530394 LOC106569203 coding downstream 730542 66649863 ~ 66658816 (-)
LOC118936436 LOC106569202 coding downstream 752424 66633925 ~ 66636934 (-)
LOC110530404 LOC106569189 coding upstream 87764 67477992 ~ 67528795 (-)
kdsr LOC106569188 coding upstream 139577 67529805 ~ 67537441 (-)
LOC110530405 LOC106569187 coding upstream 147524 67537752 ~ 67570811 (-)
LOC110530412 LOC106569180 coding upstream 379521 67769749 ~ 67818199 (-)
LOC110530414 LOC106569178 coding upstream 551087 67941315 ~ 68125947 (-)
G738477 LOC106599252 non-coding downstream 2228 67386257 ~ 67387130 (-)
G738475 NA non-coding downstream 4180 67384855 ~ 67385178 (-)
G738474 NA non-coding downstream 4861 67384233 ~ 67384497 (-)
G738473 NA non-coding downstream 6045 67383103 ~ 67383313 (-)
G738397 NA non-coding downstream 97688 67271931 ~ 67291670 (-)
G738479 NA non-coding upstream 451 67390679 ~ 67390906 (-)
G738480 NA non-coding upstream 2451 67392679 ~ 67393273 (-)
G738481 NA non-coding upstream 3249 67393477 ~ 67394495 (-)
G738482 NA non-coding upstream 5598 67395826 ~ 67396153 (-)
G738483 LOC106569192 non-coding upstream 7189 67397417 ~ 67397651 (-)
G738472 LOC106569192 other downstream 7381 67381220 ~ 67381977 (-)
G737422 LOC106569284 other downstream 674862 66713693 ~ 66714496 (-)
G737449 LOC106569204 other downstream 828841 66559196 ~ 66560517 (-)
LOC110530385 LOC106569212 other downstream 1179367 66192359 ~ 66210028 (-)
G736841 LOC106569214 other downstream 1287731 66101096 ~ 66101627 (-)
G738502 LOC106569192 other upstream 30511 67420739 ~ 67421056 (-)
G738504 LOC106569192 other upstream 33635 67423863 ~ 67425339 (-)
igfbp1 igfbp1 other upstream 1760115 69150343 ~ 69157726 (-)
G740718 LOC106569160 other upstream 2018740 69408968 ~ 69430653 (-)
G741077 foxc1 other upstream 2335546 69725774 ~ 69727431 (-)

Expression


Co-expression Network