G738504 (LOC106569192)


Basic Information

Item Value
gene id G738504
gene name LOC106569192
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 67423863 ~ 67425339 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU838580
CACAGTTGAGGTGCACCCACACGTCCAGGTCCAGGCTGAGGAGTCGGGCAGGGCCATCGGTGACTCCGTCCCCCAGCTGGTGACAGAAGCAGCAGCGGCGCTGGTCCCTGAGACTGGCCCCGGGGCGGAGAGACGCTCCCAGCTTCCTCAGCAGCTCATCTATCTGGTCCTCATCAGGGAGCTGGGAGCTTCCTCTGGGCACCACCACCTGCACTGTCCACTTCCTCCAATGGAGACCCTTGTGTCTCTTCCCCTGGTGCCAGCCCTCCTGTTGAGCCCTGGGGCCCCGCGCCTTCAGCTTCACCGTCACTTTGATGGTGTCTGACTTGGCCTCTGTCTTAGGGGTCTTTGGGGTGTCACTGGCTGGGGGGAAGGGGATgggtggggtggagggaggggactGCTTGAGCTGGAGCTGGGCCAGACAGTGGACATCCAGAGAGGACATGTTGTTGCTGTACTGGTGGAGGGCTTTCGACAGGCTCACTTTCTGGTCCGAGTCTGGAGACAGGAGGGCTACCGTGTCCTGCAGAAGACAATAATGTAATGATGACCTGCACATttcaattcattcattcattctagGCACAGCTTTGAAGAGGCACGAAAAGGATTCAACACAGCTTTGACTTGACATATTATGCAATCTTCAACACCTTTACATGCCTTTGATTCTTGTGCACACCAAAGTGCCTCatgtacagtgggacaaaaaagtacttagtcagccaccaattgtgcaagttctcccacttaaaaagaggagagaggcctgtaattttcatcatcaaagcctaccatcagtaacacactacgccgccagggactcaaatcctgcagtgccagacgtgtccccctgcttaagccagtacatgtccaggcccgtctgaagtttgctagagagcatttggatgatccagaagaagattgggagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaacacaactcgtcgtgtttggaggacaaagaatgctgagttgtatccaaagaacaccatacctactgtgaagcatgggggtggaaacatcatgctttggggctgtttttctgcaaagggaccaggacgactgatccgtgtaaaggaaagaatgaatggggccatgtatcgtgagattttgagtgaaaacctcattccatcagcaagggcattgaagatgaaacatggctgggtctttcagcatgacaatgatcccaaacacactgcccgggcaacgaaggagtggcttcgtaagaagcatttcaaggtcctggagtggcctagccagtctccagatctcaaccccatagaacatttttggagggagttgaaagtctgtgttacccagcaacagccccaaaacatcactgctctagaggagatctgcatggaggaatgggccaaaataccagcaagtgtgtgtgaaaaccttgtgaagacttacagaaaacgtttgacc
>TU838579
CACAGTTGAGGTGCACCCACACGTCCAGGTCCAGGCTGAGGAGTCGGGCAGGGCCATCGGTGACTCCGTCCCCCAGCTGGTGACAGAAGCAGCAGCGGCGCTGGTCCCTGAGACTGGCCCCGGGGCGGAGAGACGCTCCCAGCTTCCTCAGCAGCTCATCTATCTGGTCCTCATCAGGGAGCTGGGAGCTTCCTCTGGGCACCACCACCTGCACTGTCCACTTCCTCCAATGGAGACCCTTGTGTCTCTTCCCCTGGTGCCAGCCCTCCTGTTGAGCCCTGGGGCCCCGCGCCTTCAGCTTCACCGTCACTTTGATGGTGTCTGACTTGGCCTCTGTCTTAGGGGTCTTTGGGGTGTCACTGGCTGGGGGGAAGGGGATgggtggggtggagggaggggactGCTTGAGCTGGAGCTGGGCCAGACAGTGGACATCCAGAGAGGACATGTTGTTGCTGTACTGGTGGAGGGCTTTCGACAGGCTCACTTTCTGGTCCGAGTCTGGAGACAGGAGGGCTACCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU838580 False 1477 TUCP 0.51 1 67423863 67425339
TU838579 True 522 lncRNA 0.63 1 67424818 67425339

Neighbor

gene id symbol gene type direction distance location
LOC110530968 LOC106569194 coding downstream 248650 67055158 ~ 67176168 (-)
gs02 gs02 coding downstream 623039 66798543 ~ 66801779 (-)
elovl1a LOC106569200 coding downstream 741871 66672460 ~ 66682947 (-)
LOC110530394 LOC106569203 coding downstream 766002 66649863 ~ 66658816 (-)
LOC118936436 LOC106569202 coding downstream 787884 66633925 ~ 66636934 (-)
LOC110530404 LOC106569189 coding upstream 52653 67477992 ~ 67528795 (-)
kdsr LOC106569188 coding upstream 104466 67529805 ~ 67537441 (-)
LOC110530405 LOC106569187 coding upstream 112413 67537752 ~ 67570811 (-)
LOC110530412 LOC106569180 coding upstream 344410 67769749 ~ 67818199 (-)
LOC110530414 LOC106569178 coding upstream 515976 67941315 ~ 68125947 (-)
G738503 NA non-coding downstream 1119 67423242 ~ 67423699 (-)
G738495 NA non-coding downstream 11973 67412322 ~ 67412845 (-)
G738491 NA non-coding downstream 15565 67408810 ~ 67409253 (-)
G738489 LOC106569192 non-coding downstream 17573 67406714 ~ 67407245 (-)
G738485 LOC106569192 non-coding downstream 23510 67401015 ~ 67401308 (-)
G738506 NA non-coding upstream 1627 67426966 ~ 67427322 (-)
G738508 NA non-coding upstream 2885 67428224 ~ 67428978 (-)
G738507 NA non-coding upstream 3927 67429266 ~ 67430037 (-)
G738562 NA non-coding upstream 68676 67494015 ~ 67494521 (-)
G738587 NA non-coding upstream 150981 67576320 ~ 67576541 (-)
G738502 LOC106569192 other downstream 3762 67420739 ~ 67421056 (-)
G738472 LOC106569192 other downstream 42841 67381220 ~ 67381977 (-)
G737422 LOC106569284 other downstream 710322 66713693 ~ 66714496 (-)
G737449 LOC106569204 other downstream 864301 66559196 ~ 66560517 (-)
LOC110530385 LOC106569212 other downstream 1214827 66192359 ~ 66210028 (-)
igfbp1 igfbp1 other upstream 1725004 69150343 ~ 69157726 (-)
G740718 LOC106569160 other upstream 1983629 69408968 ~ 69430653 (-)
G741077 foxc1 other upstream 2300435 69725774 ~ 69727431 (-)
G741177 NA other upstream 2356950 69782289 ~ 69783294 (-)
LOC110530971 NA other upstream 2726468 70148848 ~ 70160838 (-)

Expression


Co-expression Network