G740718 (LOC106569160)


Basic Information

Item Value
gene id G740718
gene name LOC106569160
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69408968 ~ 69430653 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU841006
CACCCGAGGCTTCTGTGTAACCATGACTCCACACAGCCGGCCCACCTGACGCCTCATTGGTTGAGAAGGTCGGGGGCGGGTCGATGCGGAAACAGCGGATGTTATTGAGTTGTTCCAGGGTTTTGTGGTCCAGGTTGAGGCGAGGGTTGCCACTCAGGTCCAGCTCCTGGAGTTTAGGAGGCAGGATCTCAGGCAGGCTGATCTCACTCAGCTCATTACAGCTCAGATCTACAcaCTTCATCTCCATAAGCTGCATGACCTCAGGGAAGACTTCTATGGTGTTGGAGTGGGCAatgagtgtgtgcatgcgtctGCAGTTCATGATGGTGGTGGGCACCGTCTTGAGCCTGTTCCCACTCAGGtccacctcctccagctcctccaacTTTGCCATTTTACTGGCAGGGAAGGTGTGCAGGTAGTTGTAGGCCATGTGTAGTACTCGGAGGTGTGTGTGTCCCGTCAGTAAGGAAACACACTTATCAGTCAGTCGGTTGTTGGTGAGGTACAGTTCCTGGAGGATGCTGTTGCTCTCCTCTGATAGGCTGGAGGGAGGCAGGTGCTCGAGCTTATTGGCCGAGGCATTCAGGCACCGCAAACTGTCCCTTTGCGGACGTTATAGGTCCCCGACAGCTGTACGCGCTCCGAGCTCTCAATGCTGTGGGGCTTCCCTGGAACATACACAAGGAGAGGGAGTTAGCATAGTTAGCATCCAGCTAACATAAAACACAGGTGAGGGGGATACAGTTAGCATCCAGCTAACTCAAAACAGGGCCAGTAGCACAGAGACCTGAGTGCTGCCTCAGTACTTAAAGTATCTATTAGCCTGATGCTAATAaagtgactatagtaataaatTATTACTataaagaaaaataataataattttgtatgtacatacagtacatataatatattctgagtgtacaaaacattaaggacacctgctttttccatgccatagactgacaaggtgaatccaggtgaaagctatgatcccttattgatgtcacctgttaaatccacttcaatcagtgtagataaaggggaggagacaggttaaagaaggatttttaagccttgagacaattgagacatggctgTTGTATGTGTaacattcagaggttgaatgggcaagacaaaatacactgctcaaaaaaataaagggaacacttaaacaacacaatgtaactccaagtcaatcacacttctgtgaaatcaaactgtccacataggaagcaacactgattgacaataaatttctcatgatgttgtgcaaatggaatagacaacaggtggaaattataggcaattagcaagacacccccaataaaggagtggttctgcaggtggagaccacagaccacttctcagttcctatgcttcctggctgatgttttggtcccttttgaatgctggcggtgctttcactctagtggtagcatgagacggagtctacaccccacacaagtggctcaggtagtgcagctcatccaggatggcacatcaatgcgagctgtggcaagaaggtttgctgtgtctgtcagcgtagtgtccagagcatggaggcgctaccaggagacaggccagtacatcaggagacgtggaggaggccgtaggaaggcaacaacccagcagcaggaccgctacctccgcctttgtgcaaggaggagcaggaagagcactgccagagccctgcaaaatgacctccagcaggccacaaatgtgcatgtgtctgctcaaacagtcagaaacagactccatgagggtggtaatgagggcctggcgtccacaggtgggggttgtgcttacagcccaacaccgtgcagga
>TU841007
AAAAATATCACAGTGCAGGAACAGGTACACAGGCAAACAAAATAATTAAATTAATCTTTACTCACAATTTGTCTACACTAATAGAAGACTTACTTGAGTTGTTCCAGGGTTTTGTGGTCCAGGTTGAGGCGAGGGTTGCCACTCAGGTCCAGCTCCTGGAGTTTAGGAGGCAGGATCTCAGGCAGGCTGATCTCACTCAGCTCATTACAGCTCAGATCTACAcaCTTCATCTCCATAAGCTGCATGACCTCAGGGAAGACTTCTATGGTGTTGGAGTGGGCAatgagtgtgtgcatgcgtctGCAGTTCATGATGGTGGTGGGCACCGTCTTGAGCCTGTTCCCACTCAGGtccacctcctccagctcctccaacTTTGCCATTTTACTGGCAGGGAAGGTGTGCAGGTAGTTGTAGGCCATGTGTAGTACTCGGAGGTGTGTGTGTCCCGTCAGTAAGGAAACACACTTATCAGTCAGTCGGTTGTTGGTGAGGTACAGTTCCTGGAGGATGCTGTTGCTCTCCTCTGATAGGCTGGAGGGAGGCAGGTGCTCGAGCTTATTGGCCGAGGCATTCAGGCACCGCAAACTGAAACAGGAAGTGAGCCCAGGTGTTAGTCTTTCAACCATTACACATATTCTGCCGGTGTAATAAATTGTCACAGTATTAACATGTTTAGTCAATAACTGGGTAATAATTGACCTCTTGTCATCATGCTCTGTTGAAACAAACACAGGTCATATGTTATCTCAACAATACCAGCATgtaattcatttatttttttaacacacTGAATGAGTTTCAT

Function

NR:

description
PH domain leucine-rich repeat-containing protein phosphatase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU841006 False 1831 TUCP 0.49 5 69408968 69430653
TU841007 True 805 lncRNA 0.46 3 69429452 69430519

Neighbor

gene id symbol gene type direction distance location
LOC110530970 LOC106569164 coding downstream 196458 69114482 ~ 69240965 (-)
igfbp1 igfbp1 coding downstream 271893 69150343 ~ 69157726 (-)
LOC110530426 LOC106569167 coding downstream 434192 68908995 ~ 68995260 (-)
LOC110530425 tbb2a coding downstream 521264 68901719 ~ 68908188 (-)
LOC110530423 LOC106569170 coding downstream 573418 68834340 ~ 68856034 (-)
si:ch73-40a17.3 mep1b coding upstream 4023 69434542 ~ 69450423 (-)
LOC118965618 rnf138 coding upstream 31401 69461920 ~ 69474389 (-)
LOC110530436 rnf138 coding upstream 46787 69477306 ~ 69487134 (-)
LOC110530438 ripk1 coding upstream 106649 69537168 ~ 69553690 (-)
LOC110530443 LOC106569150 coding upstream 625984 70056503 ~ 70095135 (-)
G740711 NA non-coding downstream 32440 69396618 ~ 69397012 (-)
G740710 NA non-coding downstream 35753 69393499 ~ 69393699 (-)
G740708 NA non-coding downstream 36987 69392248 ~ 69392465 (-)
G740698 NA non-coding downstream 54416 69374683 ~ 69375036 (-)
G740694 NA non-coding downstream 59259 69369961 ~ 69370193 (-)
G740681 LOC106599727 non-coding upstream 751 69431270 ~ 69431484 (-)
G740816 NA non-coding upstream 92870 69523389 ~ 69523687 (-)
G740817 NA non-coding upstream 93706 69524225 ~ 69524461 (-)
G740963 NA non-coding upstream 127232 69557751 ~ 69557980 (-)
G741021 NA non-coding upstream 221322 69651841 ~ 69661122 (-)
G738504 LOC106569192 other downstream 2004113 67423863 ~ 67425339 (-)
G738502 LOC106569192 other downstream 2008396 67420739 ~ 67421056 (-)
G738472 LOC106569192 other downstream 2047475 67381220 ~ 67381977 (-)
G737422 LOC106569284 other downstream 2714956 66713693 ~ 66714496 (-)
G741077 foxc1 other upstream 295255 69725774 ~ 69727431 (-)
G741177 NA other upstream 351770 69782289 ~ 69783294 (-)
LOC110530971 NA other upstream 721288 70148848 ~ 70160838 (-)
LOC110530449 NA other upstream 768392 70198887 ~ 70200278 (-)
G742038 NA other upstream 1088868 70519387 ~ 70525951 (-)

Expression


Co-expression Network