XLOC_026402 (C3H16orf89)


Basic Information

Item Value
gene id XLOC_026402
gene name C3H16orf89
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 28851175 ~ 28857195 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051456
TTATTGTTTCTGTATGAAGTCTCTTAAAATGCTGTATCCGTTATTTATGCTTCTTGTTCTCTCGTCTAAAATCGATTTATCAAACCAGGATGTGATTGATAACATTCTTATGAGTTTATCCAAGGGAATCACTTACTTCGACATGCAGGGCAGTAACATAAACCTGGACGGTGTTGTTGGATACATAATACTACAAGCACAGCTGCGGGAGGCAACACGAACTTGGCCGCATTCAGATTTTCTCAGTCTCTCTCAGCGCGCAGCTGCGATTTCCATGCTGAAGAGACTAAGCAAGAGCCTTTCTACTGCGGCCAGCACCCTTCAGGAGACAGACCCCAAATACTTCAAAGAGTTCGAGCCCATTTTGGACAGCTCCTTCTGGTCCCTGCCTGGTGAATGGAGCTCCACTGACCCTTCTCTGGTTTATACCTCGGTGAGGGCTATGGAGTGCTATGATGAACACATGAGTGACAAGTGCATGACTTTCCTTCTAGGAACCTGGAAAGACAATGGAACCCCATGTATTGTGACTAAGACCTGTAGAGACACAATGACACAGTTTGGATGTCCACACTATTCCCTGTCTCACCAGCTGCTGTACTTCATGATAGGAACAATGAAAGGGTGCTCCAAAATGCTAAAGGGGGACCTAAGATTGTCTCGTGTCAACATAACTGTGGGACATTACAAGAGGATTTTCTGCTCCAATATGATGAAAAGCAACCAGGATATTTTCAAGAACAGTCTCACTGGCCAAATGCAAGACATCTTCATAGAAAACATTCTTCTATGCGGTTTAGTAGGATTCTCAGACTTCTATAAATTGGACTGGCTACAGTCAATTTTAACATGGCAAGATCAAGAAGCGGGTTGTTTTGGCAAAGAAGAGGACATCTCTCACATCTTTGAGGAATTTTTGGACGCTCCACACAAACGGGTGAAAAGAAGGGAGAAAACCCTGACAGATGGCTGCTCAAGTCACATGACAGGAGTTGCAGTGAGTGCATTAGGAGGTTTTCTCAACTTTTACCTTTCAGAGCAGGACATAACGAAGAGGCCCATAATTTAAGGGCCATACACAGAATTCCATTatcttttttaaaatgctttgtggacagggttcccacactttcaTGGACACCAAATTCAAGCactgtcatttaaataaaaaaaagtagacCATTTTAAACAGTTATGTTCAAAGAATGTGTTGTATTCAATTCTGTTCCTATTCaaatgtggtttctgaaatattgataagATGTGCATTATTAGTCATAGTTCTTCTATgagctttaaattaaaaaattttaaatgaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000075345

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051456 True 1319 mRNA 0.41 8 28851175 28857195

Neighbor

gene id symbol gene type direction distance location
XLOC_026401 si:ch211-76l23.4 coding downstream 22606 28822065 ~ 28828569 (-)
XLOC_026399 NA coding downstream 94555 28752313 ~ 28756620 (-)
XLOC_026398 gsg1l coding downstream 100680 28718817 ~ 28750495 (-)
XLOC_026397 NA coding downstream 152319 28695762 ~ 28698856 (-)
XLOC_026396 fbxl16 coding downstream 185884 28634467 ~ 28665291 (-)
XLOC_026403 BX510989.3 coding upstream 2089 28859284 ~ 28859400 (-)
XLOC_026404 eef2kmt coding upstream 12415 28869610 ~ 28872756 (-)
XLOC_026405 BX510989.2 coding upstream 42400 28899595 ~ 28909948 (-)
XLOC_026406 BX005369.2 coding upstream 394754 29251949 ~ 29252065 (-)
XLOC_026407 NA coding upstream 519418 29376613 ~ 29382605 (-)
XLOC_026394 NA non-coding downstream 348682 28444234 ~ 28502493 (-)
XLOC_026395 NA non-coding downstream 388824 28459334 ~ 28462351 (-)
XLOC_026392 NA non-coding downstream 927159 27921787 ~ 27924016 (-)
XLOC_026409 BX571960.1 non-coding upstream 695446 29552641 ~ 29552762 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_01645966_01647142 NA misc CI01000069 null 1644522 ~ 1647326 (-)