XLOC_026461 (ccdc47)


Basic Information

Item Value
gene id XLOC_026461
gene name ccdc47
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31705454 ~ 31716157 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051562
CagatttctgcataaataaatatagaaataattaGTATTGCGGTGAGAAAGGGGGGAAATCTacagtttagcattttcttattaCCACATATCcgtgtaatatatttaattatttataaaaaaaagtatacatatttatttatttgcatatttatttattgttttgtttatgcagGAACTTGcggatttattattttatttgtttgcatatttattcattgtttttgcATGTATGGTCCTCCATACATTggtgttgttattatttaatacacaatattatatatttatattgtatattatacatAATATGTGTAACATTAATAACTAACCACGACATCTAACAGTCCACACTTCAGctacagtttaaataaaaaaaaaaaagaatcatttaTTAGAGCGGCGTAAACGCCCGAATCTTTTCCTTTTCTTATCCTGGTTGTCAAGGCTCGCGCGCAAAGCATTGTGGGTAGAGTGATTCGGTCAGATGACCCCCTTGCCTCTCCTGTGAGGGGTACAGCTGCTGTCACACACTGAAGGTAACACCGGCGGTTACAGGTTGAGCCATGAGGCACCTGGTCTTCCTCCTCCTCCCAGCCCTGCTCCTGCTGTTGGCCCTGCCAGACACTAGGGGGCGCTACAACGACGACTTTGATGACGGTGAGGACATCGCTGAATTTGATGACAATGACTTTGCAGAGTTTGAGGATGTCAGCGAGGATCCAGCTGTGGATGTGGAGAAAGAACCACCACCTCGACCAGCTCCTTCGTCTACCCCTGTAGAGGATGACGAAGACGAGGCCACGGTGGAGAACGAAGACGGCCAGGATGAGTTTGAAGATACAGATGCACAGGATCAAGACATGTACAACAAATATGACACTGACGAGTTTGAAGGCTACGAGAAGTCTAATCCTTCATTCAAAGACACTCTTATATACAGAGAgGTCCCAGCACACTTGCAGAACAGCTGGGAGAGTTATTACATGGAAATCTTGATGGTCACTGGACTTCTTGCATACATTATGAACTACATAATTGGCAAAAATAAGAACAGCAGACTCGCACAGGCCTGGTTTAATTCCCACAGAGAACTTCTGGAGAGCAACTTTGCCCTTGTTGGTGATGATGGTACCAGTAAGGAAGCCACCAGTACAGGGAAGCTAAACCAGGAGAACGAGCACATCTACAACTTATGGTGTTCGGGACGGGTCTGCTGTGAGGGGATGCTCATTCAGCTGAAGTTTCTGAAAAGACAGGACCTgctgaatgtgctggccaggATGATGAGACCAACCTGTGATCAAGTGGTAGGCACACAAACACTGATGTCTTACTGTGACTCATTACAAGTAGTATCTCAGATGACTGTTTACAAGAATGTTCCTCTCATTCTGACTTTTAATTTTCCACAGCAAGTTAAAGTGACTCTAAATGATGAGGATATGGACACCTTTGTGTTTGCTGTGGGAAGTCGGAAGGCCATGGCACGGATGCAGAAGGAGATGCAGGACCTGAGTGAGTTCTGTGGCGATAAGCCCAAATCAGGGGCAAAATATGGCATCCCTGACTCTCTGACCATTTTATCAGAGATGGGAGAGGTCACGGATGGAGTGATGGACAACAAGATGGTACATTATCTCACCAGTCATGCTGATAAGATTGAGTCCATCCATTTTTCGGACCAATTCTCTGGTCCAAAAGTTATGCAAGAggAAGGTCAGCCCTTAAAGCTGCCCGAGACCAAGAAAACACTGCTGTTTACATTTAACGTGCCTGGGATGGGTAACACGTCTCCCAAAGATATGGACAGTCTGCTGCCTCTGATGAACATGGTGATTTACAGCATCGACAAGGTCAAGAAGCTCCGCCTCAACAGAGAAGGGAAACAGAAAGCCGACAGAAATCGTGCTCGCGTGGAGGAGAACTTCCTGAAACAGACTCATGCTCAGCGCCAGGAGGCCGCTCAAACACGCCGTGAAGAGAAGAAAAGAGCTGAGAAGGAAAGGATCATGAATGAGGAGGATCCTGAGAGACAGCGTCGCTTGGAGGAAGCCGCCCAGCGACGGGAACAGAAGAAGATGGAGAAGAAGCAGATGAAAATGAAGCAGATCAAAGTGAAAGCCATGTGAGACGGAtacaaacacgcatacacacacacacacacacacacacacatacactcatattcATTAGAGACAGAATCTACTACTTCCACACCTGCTATTGTACACTTTTCTTCATGAATGTGCATGCCATTCGATTGGCTGCTGTTGCACCCATAGAAACGCTCTGTTTAATAGGAAGATTGGCTGTTGAGGAGTGAATCTGATCTTTAAAAGACAACTGTATTGGAGATggtctgttcaaacagcttgaaCTTGTTTCATTGTAGCAGCCATTTCAATCACAAGTTTTCGACATAACTGCATgactgtttttattgcaatagggTCAAGAATGTTGCTTTTTGTGGGCTTTGCTGTAATAAACTGGACTTTTTAGGCCTCATCAAACCAACTTTTCCAATTCAGATGTCTCTCGGAGTTCAGTGTTGACCTTCCAAAGCTTTATCGTGCTTTAGAGATTTCACTTCATCTCGTGAAAGTTTCAGCTATGCTTCTTTTAAAAGTGAAATCAGGGAGTGTTTTTAAAAGGAAATGGGTGGGTAAGAAAGCTTTTTGTACTACAGTGCTTCCTTAGCCATATTTCTATGAGTCCATGATCGCGAGTGTTTTATAGATGAGTAAAAGGCACATTATCACTGTCTTTCAatctctttctgttttttttatgagCAAAGGCCCACTGTGAATTGTCACTGTCGAGGCAGCACAAACTCCTCCTTTATACGTATTTAATAGAGGTGAATTTTTAATTTATCGTTAAGTTAATAGTCAATCAGAGCATCCAAGAGCTTATATCATGTTTATGAGTGAACATTGACTGTAACATTTTTTCTGTAACATTTGTTAATGAGACGCtaactaaataaaacattcattaaaatgactttttcttgttttttttttttgggggggggggttgcttctcggtttattcaattcatttcagttcagctttatttgtatagcgcttttacaatgtagattgtgtcaaagcagcttcacataaatggtcatagtaactggatcagggtagttcagttttagtgtttaagttcagttcagtttagctcagttcagtgtggtttgaagtcattattgagagtccaaacactgaagagcaaattcatcgatgcgtagctgtacagatcctgaaccatgcaagccagtggcgacagcggagagggaaaaaaaacttcaccaataggagagtgaagaaaaaaaaccttgagagaaccagactcagttcggcatgaccattttaatttctccactggccaaaagtcttgtgcagagctgcagtttatcCAGATCAAGCGTTATATAAAATGATACATTTGTGTATGCAGCTTGTTTGACCGCATTTATAAGGAGATCagtaacatgtaaataaataccaAGTGAATTTTACTTcaccaattattttatttttttgtcatttcattttttgtAGCTCTAATGAACCGATTATAACTAGTGTACTAGAGAAGGCACACAGCTGGTTAAAATTGTGAATAAAGGAAACCTTGATTAGTTACATCCTCAGAAATTacacatttgctttattttttatataatttaaacttaaaattgTTGCTATGAGTGTGTGTCAGTTATCCAGATACATACAAAATTTCATGAAAAAAGAGAGATGATCAACATGGGTAATCACTACatgcgcagaaatctgc
>TCONS_00051563
GGCTCGCGCGCAAAGCATTGTGGGTAGAGTGATTCGGTCAGATGACCCCCTTGCCTCTCCTGTGAGGGGTACAGCTGCTGTCACACACTGAAGGTAACACCGGCGGTTACAGGTTGAGCCATGAGGCACCTGGTCTTCCTCCTCCTCCCAGCCCTGCTCCTGCTGTTGGCCCTGCCAGACACTAGGGGGCGCTACAACGACGACTTTGATGACGGTGAGGACATCGCTGAATTTGATGACAATGACTTTGCAGAGTTTGAGGATGTCAGCGAGGATCCAGCTGTGGATGTGGAGAAAGAACCACCACCTCGACCAGCTCCTTCGTCTACCCCTGTAGAGGATGACGAAGACGAGGCCACGGTGGAGAACGAAGACGGCCAGGATGAGTTTGAAGATACAGATGCACAGGATCAAGACATGTACAACAAATATGACACTGACGAGTTTGAAGGCTACGAGAAGTCTAATCCTTCATTCAAAGACACTCTTATATACAGAGAgGTCCCAGCACACTTGCAGAACAGCTGGGAGAGTTATTACATGGAAATCTTGATGGTCACTGGACTTCTTGCATACATTATGAACTACATAATTGGCAAAAATAAGAACAGCAGACTCGCACAGGCCTGGTTTAATTCCCACAGAGAACTTCTGGAGAGCAACTTTGCCCTTGTTGGTGATGATGGTACCAGTAAGGAAGCCACCAGTACAGGGAAGCTAAACCAGGAGAACGAGCACATCTACAACTTATGGTGTTCGGGACGGGTCTGCTGTGAGGGGATGCTCATTCAGCTGAAGTTTCTGAAAAGACAGGACCTgctgaatgtgctggccaggATGATGAGACCAACCTGTGATCAAGTGCAAGTTAAAGTGACTCTAAATGATGAGGATATGGACACCTTTGTGTTTGCTGTGGGAAGTCGGAAGGCCATGGCACGGATGCAGAAGGAGATGCAGGACCTGAGTGAGTTCTGTGGCGATAAGCCCAAATCAGGGGCAAAATATGGCATCCCTGACTCTCTGACCATTTTATCAGAGATGGGAGAGGTCACGGATGGAGTGATGGACAACAAGATGGTACATTATCTCACCAGTCATGCTGATAAGATTGAGTCCATCCATTTTTCGGACCAATTCTCTGGTCCAAAAGTTATGCAAGAggAAGGTCAGCCCTTAAAGCTGCCCGAGACCAAGAAAACACTGCTGTTTACATTTAACGTGCCTGGGATGGGTAACACGTCTCCCAAAGATATGGACAGTCTGCTGCCTCTGATGAACATGGTGATTTACAGCATCGACAAGGTCAAGAAGCTCCGCCTCAACAGAGAAGGGAAACAGAAAGCCGACAGAAATCGTGCTCGCGTGGAGGAGAACTTCCTGAAACAGACTCATGCTCAGCGCCAGGAGGCCGCTCAAACACGCCGTGAAGAGAAGAAAAGAGCTGAGAAGGAAAGGATCATGAATGAGGAGGATCCTGAGAGACAGCGTCGCTTGGAGGAAGCCGCCCAGCGACGGGAACAGAAGAAGATGGAGAAGAAGCAGATGAAAATGAAGCAGATCAAAGTGAAAGCCATGTGAGACGGAtacaaacacgcatacacacacacacacacacacacacacatacactcatattcATTAGAGACAGAATCTACTACTTCCACACCTGCTATTGTACACTTTTCTTCATGAATGTGCATGCCATTCGATTGGCTGCTGTTGCACCCATAGAAACGCTCTGTTTAATAGGAAGATTGGCTGTTGAGGAGTGAATCTGATCTTTAAAAGACAACTGTATTGGAGATggtctgttcaaacagcttgaaCTTGTTTCATTGTAGCAGCCATTTCAATCACAAGTTTTCGACATAACTGCATgactgtttttattgcaatagggTCAAGAATGTTGCTTTTTGTGGGCTTTGCTGTAATAAACTGGACTTTTTAGGCCTCATCAAACCAACTTTTCCAATTCAGATGTCTCTCGGAGTTCAGTGTTGACCTTCCAAAGCTTTATCGTGCTTTAGAGATTTCACTTCATCTCGTGAAAGTTTCAGCTATGCTTCTTTTAAAAGTGAAATCAGGGAGTGTTTTTAAAAGGAAATGGGTGGGTAAGAAAGCTTTTTGTACTACAGTGCTTCCTTAGCCATATTTCTATGAGTCCATGATCGCGAGTGTTTTATAGATGAGTAAAAGGCACATTATCACTGTCTTTCAatctctttctgttttttttatgagCAAAGGCCCACTGTGAATTGTCACTGTCGAGGCAGCACAAACTCCTCCTTTATACGTATTTAATAGAGGTGAATTTTTAATTTATCGTTAAGTTAATAGTCAATCAGAGCATCCAAGAGCTTATATCATGTTTATGAGTGAACATTGACTGTAACATTTTTTCTGTAACATTTGTTAATGAGACGCtaactaaataaaacattcattaaaatga

Function

symbol description
ccdc47 Predicted to enable calcium ion binding activity. Predicted to be located in rough endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human CCDC47 (coiled-coil domain containing 47).

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component
GO:0030867 rough endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-040912-15 Predicted to enable calcium ion binding activity. Predicted to be located in rough endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human CCDC47 (coiled-coil domain containing 47).

Ensembl:

ensembl_id ENSDARG00000054362

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051562 False 3814 mRNA 0.41 12 31705454 31716157
TCONS_00051563 True 2461 mRNA 0.45 13 31706259 31715714

Neighbor

gene id symbol gene type direction distance location
XLOC_026459 CU062431.1 coding downstream 49658 31647540 ~ 31655796 (-)
XLOC_026460 NA coding downstream 54743 31650253 ~ 31650711 (-)
XLOC_026458 moto coding downstream 85991 31606781 ~ 31619463 (-)
XLOC_026457 NA coding downstream 105172 31511470 ~ 31600282 (-)
XLOC_026456 LO017965.1 coding downstream 446995 31257172 ~ 31258459 (-)
XLOC_026462 kcnh6a coding upstream 12714 31728871 ~ 31784082 (-)
XLOC_026463 gfap coding upstream 76284 31792441 ~ 31804481 (-)
XLOC_026464 map3k3 coding upstream 99027 31815184 ~ 31845816 (-)
XLOC_026465 limd2 coding upstream 134694 31850851 ~ 31875138 (-)
XLOC_026466 zp3e coding upstream 159615 31875772 ~ 32055378 (-)
XLOC_026453 NA non-coding downstream 528245 31174133 ~ 31177209 (-)
XLOC_026450 NA non-coding downstream 611690 31093212 ~ 31093764 (-)
XLOC_026446 NA non-coding downstream 647164 31041952 ~ 31058290 (-)
XLOC_026469 NA non-coding upstream 219540 31935697 ~ 31957366 (-)
XLOC_026474 NA non-coding upstream 469742 32185899 ~ 32222085 (-)
XLOC_026477 NA non-coding upstream 608977 32325134 ~ 32337695 (-)
XLOC_026481 NA non-coding upstream 849037 32565194 ~ 32572052 (-)
XLOC_026483 NA non-coding upstream 882487 32598644 ~ 32603191 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_03298533_03302831 CCDC47 coding CI01000069 null 3298197 ~ 3302831 (-)