XLOC_026499


Basic Information

Item Value
gene id XLOC_026499
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 33300194 ~ 33304123 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053064
AACATCTTTATTAAATCAACAATTTTTTATTCCAACAgaacaaattatttacatttacagcaagaTCATCCactggattcatgaaaacaattaTACAATGCTCAATATGTCATCAGTCTGTTCTAGTTTGACTTCTCATCCTCTGTTTTGTTTGATCTGTCCTTGTTTATGGGGAAATCGAGGGATGTCCTGAAGCGGATGGGAACGACGTGCTCCTCCGAGGACTCGTCTTTGGTTTCTTCTGGTGTCTCGATATGCAGGAGTCCATCTTCACCAAGTGAGCAGCCTTCGTCCAGACACCGTGACACTCACATCCTCTGGAGAAAAGCCTCGGGTGTCCAGAGTAAGAGACACGTCCTGCTTCTTCTTCTGCTCTGGGTTCTGCATTATTTGGGCTCTACGGTGGAGAAAATCCTCTCTGAAGCTGGAAAGAGGCATGCCGCGTCTGGGCCACAAGAAGTAGGAGTTCTCAAAGAAAGGGTCGTCCATGAAAGCTCTCTCAGAGGAAGACATTTCTCTCTCTTGAGATTTTGAGTGCTCTTAGTAGAGTGATCTGCTTGCTTCAGGTCTCGCCTGTTTATATTTCTCCAACAGGGTCTAGAACCTCCCATTGGTGAGGTCATGAGTAGAAATTTGAAGCCGTAAGTAAACAGAATGTCTGCTTAGACTGCTATTTTAAGTTTACAGTTGTATTTTGATTTATGGGGCAGTGTCACTTTTTATGTCTCCTGCACAGGCGTCATTGGTCATGGTGTCCGGTTTGGGATTGCCCAATGAGAATTTGAGTCATGCAAGAGAGTCAAGTCATATGCTAATTTTACACCCAAGTGTTTGTTCTCTCATTACCTTCAGAAGCTGCTTACCGTAGACAGAAGCTATATACGCTGACTGCAG
>TCONS_00051647
ACCTTTTATAGCCAGCTGACTGTTTCATCCGGAAGCCTTTCATCAGCTGAACTTTTGCTCTCCGGCGTCTTGACTGGATTTAGGAATTGTCAATAGATCTTGGATGCCCCTCATTCTTCATTTCAAGAAATAGTCCTGTGTCAGGGATGTCCTGAAGCGGATGGGAACGACGTGCTCCTCCGAGGACTCGTCTTTGGTTTCTTCTGGTGTCTCGATATGCAGGAGTCCATCTTCACCAAGTGAGCAGGTCAATGAAGCTGGATCCAGGTGATCAGGAAGCTGCACGGCCTGAACAAACTCTTGAGCCTGGGACTCAGCAGATGACGAAGAAGCGTTTTTCTCAGCCCTCTTTCCGGCCATCACCTCCAGCCTTCGTCCAGACACCGTGACACTCACATCCTCTGGAGAAAAGCCTCGGGTGTCCAGAGTAAGAGACACGTCCTGCTTCTTCTTCTGCTCTGGGTTCTGCATTATTTGGGCTCTACGGTGGAGAAAATCCTCTCTGAAGCTGGAAAGAGGCATGCCGCGTCTGGGCCACAAGAAGTAGGAGTTCTCAAAGAAAGGGTCGTCCATGAAAGCTCTCTCAGAGGAAGACATTTCTCTCTCTTGAGATTTTGAGTGCTCTTAGTAGAGTGATCTGCTTGCTTCAGGTCTCGCCTGTTTATATTTCTCCAACAGGGTCTAGAACCTCCCATTGGTGAGGTCATGAGTAGAAATTTGAAGCCGTAAGTAAACAGAATGTCTGCTTAGACTG

Function

GO:

id name namespace
GO:0098534 centriole assembly biological_process
GO:0034470 ncRNA processing biological_process
GO:0006399 tRNA metabolic process biological_process
GO:0006400 tRNA modification biological_process
GO:0007099 centriole replication biological_process
GO:0009451 RNA modification biological_process
GO:0008033 tRNA processing biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0140101 catalytic activity, acting on a tRNA molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000101409

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053064 False 894 lncRNA 0.44 3 33300194 33301311
TCONS_00051647 True 754 lncRNA 0.49 3 33300418 33304123

Neighbor

gene id symbol gene type direction distance location
XLOC_026498 rarab coding downstream 40573 33065613 ~ 33259621 (-)
XLOC_026497 CT583642.1 coding downstream 268395 32979969 ~ 33031799 (-)
XLOC_026496 CT583642.2 coding downstream 318764 32977861 ~ 32981430 (-)
XLOC_026495 casp6b.2 coding downstream 326640 32969204 ~ 32973554 (-)
XLOC_026494 casp6a coding downstream 334346 32961488 ~ 32965848 (-)
XLOC_026500 CABZ01012959.1 coding upstream 39953 33344076 ~ 33345247 (-)
XLOC_026501 si:dkey-283b1.6 coding upstream 84900 33389023 ~ 33395233 (-)
XLOC_026502 abi3a coding upstream 91819 33395942 ~ 33417826 (-)
XLOC_026503 ccdc103 coding upstream 116091 33420214 ~ 33422738 (-)
XLOC_026504 rpl23 coding upstream 119863 33423986 ~ 33427803 (-)
XLOC_026483 NA non-coding downstream 697003 32598644 ~ 32603191 (-)
XLOC_026481 NA non-coding downstream 728142 32565194 ~ 32572052 (-)
XLOC_026477 NA non-coding downstream 962499 32325134 ~ 32337695 (-)
XLOC_026474 NA non-coding downstream 1078109 32185899 ~ 32222085 (-)
XLOC_026469 NA non-coding downstream 1342828 31935697 ~ 31957366 (-)
XLOC_026505 CR396582.3 non-coding upstream 120069 33424192 ~ 33424328 (-)
XLOC_026509 CU695077.1 non-coding upstream 377395 33681518 ~ 33690754 (-)
XLOC_026511 NA non-coding upstream 614443 33918566 ~ 33919195 (-)
XLOC_026513 BX510335.1 non-coding upstream 644546 33948669 ~ 33948788 (-)

Expression


Co-expression Network