XLOC_026633 (si:ch211-198m17.1)


Basic Information

Item Value
gene id XLOC_026633
gene name si:ch211-198m17.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 38705425 ~ 38745598 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051888
ACGCGTGTCTCAATGTTGGGTGTGTGTGGGGATAAAGTGAATGTCACACTGATTTCAAAAGTCTTTCGCAATCTGTGGGCTCAGAATCCTCCCACTGCGGGCGTATTTAACCCGCTGGACGCTTTCAAACCACCTGTAGCGGATCTGTGTCCTCCAACGGATATAAACCTCCGAAAGCCACCAAGACACCGGGCACGAAGCCCCTGTGACGGGAGACATCTtctgttttcattgtttttttcttatatcattatattttttgtatttgtatgaatGTTAATTAAGAAGAGAACTATGTTACTGACGCACCGACTCTTCTTCCTATTGATATTAATCTCGACTTCAGCTGTAACAGAGATAGATGCAAATGCCACAGGCTCACCCACTAGTGATCCCACCATGACTGTTGCACCAAGCATTCCATCTGGGAATACAAGTACAGCATTCCCAAACAGTGCTACAACTTCAGCTCTGTTGACAACACGTCGTGGTGATGTCACTTCTCTACTCTCATCTACTCAAGACAGCATTTCGAGCTCATCCACAACTCCACTAGTTAATGCTACAAGCTCATCAGTGAGTACATCAGGAAATGCCACAACTTCACCTGCACCTGTAGCCAACATCACAAGTCCACTTGAACCTACAGCGGGGAATGCAACAACCGATCCTGTAACTGCACCAGGGGACAGCACAACTACTAATTTCCTTGAGTCAGGCAACAGCACATCTCTACCCCACACTACAAGTGGCAATTACACATCTCCTCTCATTAGCTCACCAGGCTACACCACTGCTCCATCCATTACAACCCCAAGCAATGTCACAATTACCGCCCAAACCACATCAGGTAACGATACAACAGCAAACTATGCCACGACGTCACCCTCAGCCACACACTTACCAACACCAGAGAACAATGCAACAGGGAGCGCTACCACACCACCCATCACTACACCAGGGAACTTTACAACAGGTGACGCTACTTCACCACCCTTAACTTCATCAGGAAGTAATACAACAGGGAACGCTACTGCATCACCCATGACTACACCAGTAAATGCTACTACACAACCCTTAATTACAACAGGGAATGGTACAACGGAGAGTCCTTCTAGACCATCCATGACTACACCAGTGAATTCTACTATACCCCCCATTTCTACACCAGAAAGCAATACATCAGGGAATGCTACTGCACCATCTATGACTACACCAGTAATTGCTACTACACAACCCTTAACTACACCAGAGAACAATACAACAGGTAACACTTCTGCACCATCCATGACTACACCAGTGAGTGCTACTACACAACCTTTAACTACTCTAGAAAACAATGCAACAGTAAACGCCACCACACCACCCATGACCACACCAATACATGCTACTACACCACCCAAAACTACTCCAGGGAGCAATACGACAGTAAATGCTACCACACCACACATCAGTACAACAACGAACAATGCCACAGTAAATGCTACCACACCACACACTACTACACCAGGGAGCAACACAACAGTAAATGCTACTACACCACCCATAACTACACCCTGGAGCAATACCACTGTAAATGCAACTACACCCCACTTTACTTCACCAGTGAGCAATTCAACAGTAAGTACTACCACACCACTCATAACCACACCCGGGAACCATACCACAGTAAATGCTTCAACACCACCACCCATAACTACACCCGGGAACCATACCACAGTAAATGCAACTACACCACTCATAACTACACCAGGGAGCAATACAACAGTAAATGCTACTACCCCACAAAGTACCACTCAAGGAAGCAATACAACAGTAAATGCTACTACGCCACCTATAACTACACCCGGGAACCATTCCACAGTAATTGCAACTACACCACAATATACTACTCCAGGAAGCAATACCACAATAAATGCTACTACACCACAAATTACTACAACAGGGAGCAATACCACAGTAAATGCCACTACACCAACCATAACTACACCAGGGAGCAACACAACAGTACATACTACCACACCATCCACTAGCACACCAGGAAACAATACCACAGTAAATGCTACTACACCCTCCATAACTACACCAGGGAGCAACACAACAGTAAATGCTACTACACCACACAATACTACACCCGGAAACAATTCCACAGGAAATGCTACAACACCGACAATTACTACACCAGGGAGTAACACAACAGTAAATGCTACAACACCACCCATTACTACACCAGGGAGCAACACAACAGTAAATGCTACAACACCACCCATTACTACACCAGGGAGCAACACAACAGTAAATGCTACAACACCAGCCATTACTACACCAGGGAGCAACACAACAGTAAATGCTACTACACCAGCCATTACTACACCAGGGAGCAATACCACAGTAAATGCTACAACAACACCCATTACTACACCAGGGAGCAATACAACAGTAAATGCTACCACACCACCACAATCTACTCCAGGAAATACTACTCTACCACCTATAACCAACTCAACAACTGGACCCATCGTATCTACTACTAACCCAACTAACACCACCACACCAGGTACTTGTCCTACAGTGCCCTGCCCATCACTCAGTGTCTGTGTGAACTCCGTCTGCCAGTGCTTGGCAGGAACTGttcttttaaataatgtttgtgtGGAAACTAAAACCTTTGCTAGTTCCCTACGAGTGAACCGCACTTTTGATGATGCCATGAATGATCCCAAGTCACCTCAATTTCAGGAATTTGCAAATGAGATCATGGCTGCGGTAAATGGAGCCATGCGTAACCAGAAAAACTACATTAACTGTACAGTGATTAAATTGATGCCTGGCAGTGTAGTGGCCACAGTTAACATGCTTTTTGAGCCCAACTCTCAAGTCACCCAGGAATCAGTTTCATCTGCCATAACTACTGCTATACAACAGTGCAATAACACAAATTGTGGGATTCTTGCTGGTGCACAATACAGTGAAACTAGTCTGTGTGCTCAAAATCCTCCTCCTTGTGATACCGAAACTACAGTGTGTAATACTAAAGATGGGTCTGCCATCTGTACCTGTGTAACTGGTTACATCCCCAGTCCTTACCAGATCAAAAGCTGCAGTGcttGCCCAAGTGGCTCCAAAgcatatgaaaataaatgtgtgCCATGTTCGTTTGGATATTCTGGATTCAACTGTAATGACtCCTCTCTGTTGGCTCTGGTGGTGGTGGCCTGTGTATTAGGGGGTCTTCTGCTCATTGTGATTGTGGTAGCTATCATCTACATCTGCAAGAGGAAGAAGCCAGACATCAATTATTTCAGCAGCCCCTACTCTGCTGGGGACTACCGGACCCATTGGACCTCTCAAGAGGTCGGCCATATCCCCCGTGCCACTCTCACATCCACCTCCAGCCATGATGTCTCTGGGAACAGTCTGGAGATGTCTGAAGCGATGGGCAAAGGGAAAGGGCACAGTAATGGATTGACGGGCTCGTATGATCTCACTTCAGATAGCATGAGAACCTTTAAAGACCCGAACCCTACACGGTACTCTTATCTGGTGGGTCATGAAAACCCCTATTTCATACCGGGAGATGAGAAGAGATGAGGAATGCAGAAGAGGAAAGTAAGAGGACAAGAGTGCAATAATAATAACGTGAATTATAAAAAGGCCTTGGATCAAAACATTTCAGGAAAGATTAACCACACAGCTGACTCAGTGCATACATGCAAACAGCTTTAGAGAGATTTatcgtttttaatattttaaaatgcagctTTTATTCTAAATTCTATTACCCAGGATAAAATGCTCGCTTCCTATAAGTGCATTGATGATTGGGTTTCTTTTTCCACAAGTTTGACTGGTGTGTTTTATGTATGAGGATGAGAGATGAACACAGAACACTCTTTTTTCTGTTCatatgtctttatttttttagaatgttTCATCTGCACATTTCATATCCAGTGTTTGTTAATATTTCAAAGATCATCCGTATGTTGCTATGGTTTTCATCTCAGAACACTTTACTATAAAAGGATGTAATATTGAACCATGTAAGTGATCGTTGATGACTTAACCAGTCATATGTTGCATGCATGGTTTTTTAGCAATAGTAAAATCTACATATGGGTCAAATTATAGATttgttttacattgtatttatattttttaacatattccagattttcaaatagttgtatctctgccaaatattgtcTTTTCTTTACAAACCATATGCAAACGTATTTATTTAACTTTCAGGTCTTATTTTTTCTTCCTAAATTTTGACACTTATGACTAGTTTTGTGGTCTATGGTCACATTTTATTGAAATTATTCTGTTATTGCAATAAATTAGGGGCATAATATTCAATATAATCCAGTTTCTTGTTTTTAAAAGGCATCTAATCAATCCAGTAATTGCACTTTTAAGGAGAAAGGGTGTctgtatttgtgtctgtgtgtgttttaagttatatgaCAATGCCCTCTGATATATTCAGTTCTGTCATGACAACGTTTGAAGAGAGTATAGTTATATGTATATGGAAACGTTTGTAATCAATGATTATTGGTGCAGAGCTTGTACTtctagaccatttcaatgtggtcatgtcattggcccatgaacatttcctgcttatcaaattatttcataactgtaacaagaggcaatttaatcataacttaatgttaaaacagctgccataacattatcaatatgtggctctttttggattctctgaagctatagaaatgaaaaatgtaaaacaggaaatacaataagaccattgcttttgtttgcatcccttaaaatggtctatactgCCAGTATTTTCACAAACATATACTGTCTGAGAATGTAAAACGCTTCTGCTGCAAACATAACATACATAAACCTCCTATAGCAGATCCATACACAGGTGGAGGATGGTAGAAGTAAATGCATGGCAGAATGCTAATGTAAATGACACTGAGGTATTTAAATATTGAGGATCAAGCTCATTGGCTGATGAAGGGACAGCAACCAATCATGCAGTTGGAAACATAGAACTTATGGGCCTGCCCAATCCGCCTGTTAAGTGTGACGTCTTGCAAATCAGCTTacgggtccaagcactctatcaaactgtatggggagactcgacaaataataataaaaaacatttacaaaatgatATAATACCTTCGATTATATCGCAATCACAATACATAAATATCCATACCTAATATCCGTTGGcctaaaagtaatacatttttataaattggtaaaatgttggtatttgtaaTGCAGAAAGTCCAGAGATGGTTGTGTACAGCATGATTTGATATAAAATtccctttaatgtgtgataggactaaaaagtggccataTAATATTTTCTTAGTTCAAATGAGTAggggcttggacccggaaacagtatttcctacatcacaacttaacaagtggatagagTTTCATGACAGAACATTGTATTTATGACTTTTtggtatatacatatatttctccaaagaattaatttatttcctgcCAGGACAATGCATGCCAGCAGAAATTGATCTCTGTGCCTGACTTTGACGTGGTCTTTCGAATAGGAGAAATATGAATTAAAGAGGAGTTTTCTTTTAATCATGTCTCCTCTGTAGACGTGCCAATAATCAAATTTATGTACACCAGAACCTGACAGTGTTTATTTAACTGTCTGTTTGCTACATATAGACTTATTTATGTGTCACTGGGATGTTTTCTATCTGTACATAAggcttttgtaaaaataaatgctctTGGGACAGAGTGATTATTCATGTTGTTCTGTATGttgaaactaaataaattaatataaagatGTAGTTATCTAAAA

Function

symbol description
si:ch211-198m17.1 Predicted to be involved in cell-cell junction assembly. Predicted to act upstream of or within heart development. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007043 cell-cell junction assembly biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-451 Predicted to be involved in cell-cell junction assembly. Predicted to act upstream of or within heart development. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000091834

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051888 True 5851 mRNA 0.41 13 38705425 38745598

Neighbor

gene id symbol gene type direction distance location
XLOC_026632 mpp3a coding downstream 12505 38647987 ~ 38692920 (-)
XLOC_026631 BX936420.1 coding downstream 176009 38525979 ~ 38529416 (-)
XLOC_026630 baxa coding downstream 919552 37776489 ~ 37785873 (-)
XLOC_026629 baxa coding downstream 931625 37766473 ~ 37773800 (-)
XLOC_026628 si:dkey-260c8.6 coding downstream 945429 37757385 ~ 37759996 (-)
XLOC_026634 znf281a coding upstream 17293 38762891 ~ 38783951 (-)
XLOC_026635 si:dkey-106c17.2 coding upstream 166959 38912557 ~ 38918717 (-)
XLOC_026636 NA coding upstream 225837 38971435 ~ 38975698 (-)
XLOC_026637 NA coding upstream 366716 39112314 ~ 39113547 (-)
XLOC_026638 svilc coding upstream 367300 39112898 ~ 39171968 (-)
XLOC_026626 NA non-coding downstream 1056036 37634100 ~ 37649389 (-)
XLOC_026625 NA non-coding downstream 1120618 37581522 ~ 37584807 (-)
XLOC_026621 CT573704.2 non-coding downstream 1629612 37075698 ~ 37075813 (-)
XLOC_026619 NA non-coding downstream 1733203 36969403 ~ 36972222 (-)
XLOC_026646 CU464118.1 non-coding upstream 626275 39371873 ~ 39454903 (-)
XLOC_026648 NA non-coding upstream 816186 39561784 ~ 39563301 (-)
XLOC_026651 BX322795.1 non-coding upstream 903847 39649445 ~ 39649562 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_04841558_04852685 NA coding CI01000046 null 4841558 ~ 4853176 (+)