XLOC_026660 (znf598)


Basic Information

Item Value
gene id XLOC_026660
gene name znf598
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40185253 ~ 40202607 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051925
TGCGCAGAACGATTACGCACAGAGGAGCGCGCTTCTCCCGGCCTCATTGCCTGTACTGCCGTTCACAAACCCTCCAAATCCACCCGGATTAAACCGACAAAACCACACCACACGCCTTCGAACAGCATGGAGTCTGCCCTGAAGAAAGACACGGAGAGCACCTGTGTGCTGTGCTGCCAGGACATCGACCTGTTCGCGGTGGGGAAGTGCGATCACCCGGTGTGTTACCGCTGCTCCACCAAGATGCGGGTGCTGTGCGAGCAGAAGTACTGCGCCGTCTGCCGGGAGCAGCTAGACAAGGTGGTCTTCTTAAGGAAACCAGAAGCGTTTGCCACTCTGAACATTCATCATTATCAATGTGAGAAGAAATATGACATTTATTTTGGAGATGGAAAGGTTCATGCACAGttcagGAAGATTTTGTTAAATGAATGTCCACATTGCCCGGAACCGAAAGTGTTCTCCAAATTTGAAGAATTAGAGCAGCATATGCGGAAACAACATGAGCTCTTCTGCTGCAAGTTATGCTTGAAGCACTTGAAGATATTCTCATATGAGCGCAAGTGGTACAGTCGTAAAGATTTGGCTCGCCATCGAATGCAAGGGGACCCGGATGACACCTCGCACCgcgggcatccgctttgtaaattCTGTGACGATCGATACCTGGACAACGATGAGCTGCTGAAACACCTGCGCCGCGACCATTACTTCTGCCATTTCTGTGATGCAGATGGAGCTCAGGAGTATTACAGTGACTACCAGTACCTGAGTGAGCACTTCAGAGAGAGCCATTATCTGTGCGAGGAGGGCCGCTGCAGTACAGAGCAGTTCACTCACGCTTTCCGCACAGAAATTGACTATAAGGCTCACAAAGCTGCTGCCCACAGCAAGAACAGGGCAGAGGCAAGGCAGAATCGTCAAATCGACATTCAGTTCAACTATGCACCCAGACAGCAGCGCAGAAATGATGTTGGTGGCGATGATTACGAGGAAGTGGACCGCTTCAATCGACAGGGAAGACCAGGAAGAGGAAGAGGCCCAGGTGGACAGCAGAATCTCAGGAGTTGGAGATATAACCGAGAGGAAGAGGACAGGGAGATGGCTGCAGCCATGCGAGCTTCAATGGCCAGTCACCAAGAAGAGAGAAGCCACGTGCAAGAGAGAAGCATGCTGAAGCCACGCAGAGAAGAAAAGTTGGAGCCGGATGAGATGAGGAATAACAGGAGCACAGCAAGACCAACTAATGATATTCAAGCTCGATCGATGAAGAGTAATGGCTCTTTGGCTGGTCAGGACTTTCCTGTCTTAGGGGCAGGTGCACCTCCTGCGCCAGTTCAAAGCATGATTCAAAAACCTTCTGTCTCCCTAAAAGAAGATGACTTTCCAAGTTTGTCTGGCTCTGTCGTTTCTTCTCCAATGACACCAGCATACACCAATCAACCCAGGAAACATTCTTCCTTCCAAGAAGAGGATTTCCCTGCTCTAGTCTCCAAGATCAAACCACTGAAGCCCCAGTCCAGCGCAGCATCTGCCTGGTCTCAAGCTGGAAGCAAACCTGTCGTGGCTCCCAACAAGCCTGTCGTTCTGCCCACCAAAATGACCCCTATGTCCTCCTCGTCCATATTGTCCAGCACTGACCCGCTTCCCAGTGCAAGTGTTCCTCAGCCTCTCACTGCCTCCTCGTCTCGCCGCAAAAAGATGCTCACTCTTACTGAAAGCCACAAAGATCCACCAAAAGTCAGATGTCCGTCTTCATCCGACGACGAGGACCCTCATAGTGGTAAAACAGCCCTGGAGATTCGAACAGTGCCGACCATGCTGGACATTTCCACTCTGTTAACGGTGAAAGGAAGCTCACCTCAGGCCAACCCCAAAGCCAGTAAGAAGAAGAAGCAAACTACGGCTTCTTCTTTGGGATCTCCTTCACGTACTCCAGAGACTGTTTCCAAAATGGCTCACAAAGAGAACGTTCCTGAGAAGAAGCCCCCAGAAACGGGTCTCAATAAAGCTCCTACAGCCCCTAAAACAAACTCTATTGTTAACGGAGTTGCAGAGAAGCCTGCAGAAGCACTGTCCTGTACATCATTTCCTGAAAATATTACTTCCTCAAAGCAGCCGGTTACTGATCAAGCTCCTCCATCTAAGGAAGAAGAGTTTCCTGCTCTTATCTCCAAAAAACCTCCACCTGGTTTTAAAAGTGCGTTTCCGTTGAGGAATTCTCAGAgtgctcttcctcctcctcctcctcctggcCTCGGGCCTGCTGTCAGCAAACCTCCTCCAGGATTCACTGGTGTCCCACTCAATAGTAATGTGGAGGATTCTTCAGTGTCCGCTGTTAACAGACCAACACCTGCTATTGGATCCTACCTCATACCTGATCATTTCCAGCAGAGAAACATGGACCTTATTCAGTCTATTAAGAATTTCCTTCAAAATGATGAAACCAAGTTCAATGAGTTTAAAAACTATTCAGGCCAATTTAGACAGGGTGCACTTCCTGCTGTTCAGTACTATAAAAGCTGCCAAGAGCTTCTGGGAGAGAATTTCAACAGGGTCTTTAACGAACTGCTGGTTCTCCTACCAGACACTCGCAAGCAACAGGAGCTCCTCACTGCCCACGGAGACTTTAAGGCCCTTGAGAAACAGCAGCAGGGCTCCAAACCTAAAAAGAGCAAGAAGAAAGCCTGGCAGACGggcaccagcagcagcagcagcctggATCTGGACTGCCAAGTGTGTCCCACGTGTAAACAGGTGCTGGCGCTCAAAGACTTCAACACCCATAAGACCCTTCACATTGGTGATGATGACTTCCCTTCTCTACAGGCCATAAGCAAGATTATCAGCTAGCGGACGTTCACGGCTGTCcacgacaaacacacacacacacacaagcctggTGCTGCACCAGAATAATAAAGCAGGATGCTTGAGAGgatgatgattatgatgtttACTCTGATAGTTCAGGTTCAGCAAGTTTTGACGTCACCTTCGATTTTGGGGCAGATTGATCAACCCTGGACGCACGCAGGTAGAGCTTGTTAAACATTTCCAAGAGGTTTCATCTACTTGAAAAGCTTGAGTTCTAACGTTAATTCCTTTTAATGCTCCTCCAGTTGATCATCTTGACTTGTTCTCTTCATCAGGTTTTCCAATGCTGTTAGCATGGTCATTTTTCGTTTTTTTTGTAACGGTAAGGTTGGCTGCCTTTGAAAAATAACCTATTTATTTCAGAACGCTCCTGCCGTGTGATTTGGAATCAATTCATTTCTCATCTCTGTTTACAAACTTTGCAGCGCATCAAAAATAAAATGGTTAATACGTCGAGTTTTCTTACGGTAAGCTATGTTGATCTGTCAACTGGTTCTTGACAAATGACGTTTCTGAATGTTTGTTCGTGCTTTAACACTTTGCAATTAAACTATCAAGCCAGGGAA

Function

symbol description
znf598 Predicted to enable ribosome binding activity and ubiquitin protein ligase activity. Predicted to be involved in protein monoubiquitination and rescue of stalled ribosome. Predicted to act upstream of or within regulation of translation. Orthologous to human ZNF598 (zinc finger protein 598, E3 ubiquitin ligase).

GO:

id name namespace
GO:0072344 rescue of stalled ribosome biological_process
GO:0006417 regulation of translation biological_process
GO:0006513 protein monoubiquitination biological_process
GO:0016740 transferase activity molecular_function
GO:0043022 ribosome binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-060602-3 Predicted to enable ribosome binding activity and ubiquitin protein ligase activity. Predicted to be involved in protein monoubiquitination and rescue of stalled ribosome. Predicted to act upstream of or within regulation of translation. Orthologous to human ZNF598 (zinc finger protein 598, E3 ubiquitin ligase).

Ensembl:

ensembl_id ENSDARG00000014945

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051925 True 3446 mRNA 0.48 12 40185253 40202607

Neighbor

gene id symbol gene type direction distance location
XLOC_026659 NA coding downstream 3599 40180136 ~ 40181654 (-)
XLOC_026658 drg2 coding downstream 22386 40153819 ~ 40162867 (-)
XLOC_026656 myo15aa coding downstream 48510 40056485 ~ 40136743 (-)
XLOC_026657 BX649547.1 coding downstream 96452 40088685 ~ 40088801 (-)
XLOC_026655 llgl1 coding downstream 130504 39970355 ~ 40054749 (-)
XLOC_026661 flii coding upstream 3424 40206031 ~ 40232615 (-)
XLOC_026662 top3a coding upstream 32681 40235288 ~ 40254634 (-)
XLOC_026663 shmt1 coding upstream 58322 40260929 ~ 40276071 (-)
XLOC_026664 pdap1b coding upstream 75097 40277704 ~ 40284744 (-)
XLOC_026665 atp5mf coding upstream 94178 40296785 ~ 40301467 (-)
XLOC_026654 BX649356.3 non-coding downstream 227779 39957358 ~ 39957474 (-)
XLOC_026653 BX649356.2 non-coding downstream 233726 39945865 ~ 39951527 (-)
XLOC_026651 BX322795.1 non-coding downstream 535691 39649445 ~ 39649562 (-)
XLOC_026666 NA non-coding upstream 193456 40396063 ~ 40405386 (-)
XLOC_026671 NA non-coding upstream 571811 40774418 ~ 40777723 (-)
XLOC_026680 CR769786.1 non-coding upstream 1109415 41312022 ~ 41312143 (-)
XLOC_026681 BX537310.2 non-coding upstream 1193516 41396123 ~ 41512210 (-)
XLOC_026687 NA non-coding upstream 1980746 42183353 ~ 42205112 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_03998572_04009276 ZNF598 coding CI01000046 null 3998572 ~ 4010216 (+)
bowfin (Amia calva) AMCG00018503 znf598 coding CM030135.1 CM030135.1 12885187 ~ 12904501 (+)