XLOC_026664 (pdap1b)


Basic Information

Item Value
gene id XLOC_026664
gene name pdap1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40277704 ~ 40284744 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051932
AATAAACACGAACCACAGTTGTTGTCCGCGTTATATTTCGACTTATCCAAATGCTAATATCATTTGTTATGAATTACTGAGTATCTCAAATATCAGCAATAGTTTTATTATGGTAAAGCTGTGATGTTATTCTGTAGTCCACCATATTGCATCAGGCTAGGTGTCTGATCGTGTGCCTGAATGTAAATATAAGAACATGGACCCGCTGGCTAAATGCTAATCGATGACTGTACCTACATAATCGTGGAGTTTTGTGTTGGTGTCATTTACTGTATATCACCCGAGCCGATAAATACCACGAGCGGTTAAATACTGGCATTCAGTACTTAGTTAAATACGCTAGGTTGTGAACTGTGGCAACCTGATATCATTACTGTACCAAGCCTTTATTGGGATTCCTAGTGTGTTTAACtcgattatttttatttcaagtcAAGTTTATTCTTCATTATGCCTAAAGGAGGGAAAAAAGGTGGCCATAAAGGTCGCATGAGAACCTACACAAGTCCCGAAGAAATTGATGCTCAAATGAaagcagaaaaagaaagaaaaaagaatgaagaagaagaaggcGCAGCAGTGAACGACAACCAGAGTGAAGACAAACTAACAGCATCAGGTTCAGAGGACAGTGACGATGACGGGTCTCAGAAAAGAAAGGGGGTTGAGGGCTTGATAGAGATCGAAAATCCCAATCGAATCGCCCAGAAAGCGAAGAAAGTGACAGAAATAGAACTTGAGGGACCTAAACAGCTTTCCAGAAGAGAAAGAGAAGAGATTGAAAAGCAAAAGGCGAAAGAAAGGTATATGAAAATGCATTTAGCAGGAAAGACGGATCAAGCTAAAGCTGACCTCGCTCGACTCGCCATTATTAGAAAACAGCGTGAGGAGGCTGCACGGAAAAAAGACGAGGAACGTAAAGcgaaagAAGAAGCAGCagcggcagcagcagcagctaAAGGACTGCATACATTGTCTCTCAAATAATCTAAATCGTGGATTCTCAGAGGTTTTGTGGACAGTAAACAGTTATATTGACAATGTTATTTTTGAAGAAAACGCAAATGATAGTGAGGTATGCGATGCGAAACGATGTAACACGATGTTCTATTGAAAAGGAGCATTTCAGAGTATATTAACACAGAAAAGTGGGCATCGTCCAAAAACAAAACGCCTTTGTGAGAGCCCGGATTTGTTCAATTTTAATGCTTGCTTTCACTCAATGATATTAGGAATATagtcatatttattaatatattaacatattgCCACATTTAACTGAGGGGATTGTACAATATAAAGACGCCATAGTCTGTCCTCAGTTGTAAAGGACCTGGTGTAATTTAGAGCGACGTTCTGATGGTATTCTCTTAAAATATTGTAAAGGATAACAATAAAGTGTCAGAACTTTTTATTGAAAA

Function

symbol description
pdap1b Predicted to be active in cytosol. Is expressed in axis; lens; myotome; polster; and solid lens vesicle. Orthologous to human PDAP1 (PDGFA associated protein 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005829 cytosol cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-942 Predicted to be active in cytosol. Is expressed in axis; lens; myotome; polster; and solid lens vesicle. Orthologous to human PDAP1 (PDGFA associated protein 1).

Ensembl:

ensembl_id ENSDARG00000002967

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051932 True 1421 mRNA 0.39 6 40277704 40284744

Neighbor

gene id symbol gene type direction distance location
XLOC_026663 shmt1 coding downstream 1633 40260929 ~ 40276071 (-)
XLOC_026662 top3a coding downstream 23070 40235288 ~ 40254634 (-)
XLOC_026661 flii coding downstream 45089 40206031 ~ 40232615 (-)
XLOC_026660 znf598 coding downstream 75097 40185253 ~ 40202607 (-)
XLOC_026659 NA coding downstream 96050 40180136 ~ 40181654 (-)
XLOC_026665 atp5mf coding upstream 12041 40296785 ~ 40301467 (-)
XLOC_026666 NA coding upstream 111319 40396063 ~ 40405386 (-)
XLOC_026667 actb2 coding upstream 241363 40526107 ~ 40529804 (-)
XLOC_026668 rnf216 coding upstream 316026 40600770 ~ 40664913 (-)
XLOC_026669 uts2r5 coding upstream 395187 40679931 ~ 40681001 (-)
XLOC_026657 BX649547.1 non-coding downstream 188903 40088685 ~ 40088801 (-)
XLOC_026654 BX649356.3 non-coding downstream 320230 39957358 ~ 39957474 (-)
XLOC_026653 BX649356.2 non-coding downstream 326177 39945865 ~ 39951527 (-)
XLOC_026651 BX322795.1 non-coding downstream 628142 39649445 ~ 39649562 (-)
XLOC_026671 NA non-coding upstream 489674 40774418 ~ 40777723 (-)
XLOC_026680 CR769786.1 non-coding upstream 1027278 41312022 ~ 41312143 (-)
XLOC_026681 BX537310.2 non-coding upstream 1111379 41396123 ~ 41512210 (-)
XLOC_026687 NA non-coding upstream 1898609 42183353 ~ 42205112 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000046_03953528_03957334 PDAP1B, PDAP1 coding CI01000046 null 3953105 ~ 3957695 (+)