XLOC_026667 (actb2)


Basic Information

Item Value
gene id XLOC_026667
gene name actb2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 40526107 ~ 40529804 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051935
CCTCACTTTGAGCTCCTCCACACGCAGCTAGTGCGGAATATCATCTGCTTGTAACCCATTCTCTTAAGTCGACAACCCCCCAAACCCAAGCCATGGATGATGAAATTGCCGCACTGGTTGTTGACAACGGATCCGGTATGTGCAAAGCCGGATTCGCTGGAGATGATGCTCCCCGTGCTGTCTTCCCATCCATCGTGGGTCGCCCCAGACATCAGGGTGTCATGGTTGGTATGGGACAGAAAGACAGCTACGTTGGTGATGAGGCTCAGAGCAAGAGAGGTATCCTGACCCTGAAGTACCCCATCGAGCACGGTATTGTCACCAACTGGGATGATATGGAGAAGATCTGGCATCACACCTTCTACAACGAGCTGCGTGTTGCCCCAGAGGAGCACCCCGTCCTGCTCACAGAGGCCCCCCTGAACCCCAAGGCCAACAGGGAAAAGATGACACAGATCATGTTCGAGACCTTCAACACCCCCGCCATGTACGTTGCCATCCAGGCTGTGCTGTCCCTGTATGCCTCCGGTCGTACCACTGGTATCGTGATGGACTCTGGTGATGGTGTCACCCACACTGTGCCCATCTACGAGGGTTACGCCCTGCCCCATGCCATCCTCCGTCTGGACTTGGCTGGCCGTGACCTGACTGACTACCTCATGAAGATCCTGACCGAGAGAGGCTACAGCTTCACCACCACAGCTGAGAGGGAAATTGTCCGTGACATCAAGGAGAAGCTCTGCTATGTGGCCCTTGACTTTGAGCAGGAGATGGGCACCGCTGCTTCCTCCTCCTCCCTGGAGAAGAGCTACGAGCTGCCTGACGGACAGGTCATCACCATTGGCAATGAGAGGTTCAGGTGCCCAGAGGCCCTGTTCCAGCCATCCTTCTTGGGTATGGAATCTTGCGGTATCCACGAGACCACCTTCAACTCCATCATGAAGTGTGACGTCGACATCCGTAAGGACCTGTATGCCAACACTGTATTGTCTGGTGGTACCACCATGTACCCTGGCATTGCTGACAGGATGCAGAAGGAGATCACATCCCTGGCCCCTAGCACAATGAAGATCAAGATCATTGCCCCACCTGAGCGTAAATACTCTGTCTGGATCGGAGGCTCCATCCTGGCCTCCCTGTCCACCTTCCAGCAGATGTGGATTAGCAAGCAGGAGTACGATGAGTCTGGACCATCCATCGTCCACCGCAAATGCTTCTAAACGGACTGTTACCACTTCACGCCGACTCAAACTGCGCAGAGAAACTTCAAACGACAACATTGGCATGGCTTTTGTTATTTTTGGCGCTTGACTCAGGATCTAAAAACTGGAACGGTGAAGGTGACGGCAATGTTTTTTGGCAAATAAGCATCCCCGAAGTTCTACAATGCATCTGAGGACtccatgttttgttttctttagtcATTCCAAATGTTTGTTAAATGCATTGTTCCGAAACTTATTTGCCTCTATGAAGGCTGCCCAGTAATTGGGAGCATACTTAACATTGTAGTATTGTATGTAAATTATGTAACAAAACAATGTCTGGGTTTTTGTACTTTTCAGCCTTAAAATCttgggtttatttttttttctttgttccaaAAAAACGAAGCTTTACCATTCAAGATGTAAAGGTTTCCATTCCCCCTGGGCATATTGTAAAAGCTGTGTGGAACGTGGCGGTGCCAGACATTTGGTGGGGCCAACCTGTACACTGACTAATTCAATTCCAATAAAAGTGCACATGTAAGACATCCTAA
>TCONS_00051936
AAGAGCGCGCCCAGCTTTTCAGCCTCACTTTGAGCTCCTCCACACGCAGCTAGTGCGGAATATCATCTGCTTGTAACCCATTCTCTTAAGTCGACAACCCCCCAAACCCAAGTTCAGCCATGGATGATGAAATTGCCGCACTGGTTGTTGACAACGGATCCGGTATGTGCAAAGCCGGATTCGCTGGAGATGATGCTCCCCGTGCTGTCTTCCCATCCATCGTGGGTCGCCCCAGACATCAGGGTGTCATGGTTGGTATGGGACAGAAAGACAGCTACGTTGGTGATGAGGCTCAGAGCAAGAGAGGTATCCTGACCCTGAAGTACCCCATCGAGCACGGTATTGTCACCAACTGGGATGATATGGAGAAGATCTGGCATCACACCTTCTACAACGAGCTGCGTGTTGCCCCAGAGGAGCACCCCGTCCTGCTCACAGAGGCCCCCCTGAACCCCAAGGCCAACAGGGAAAAGATGACACAGATCATGTTCGAGACCTTCAACACCCCCGCCATGTACGTTGCCATCCAGGCTGTGCTGTCCCTGTATGCCTCCGGTCGTACCACTGGTATCGTGATGGACTCTGGTGATGGTGTCACCCACACTGTGCCCATCTACGAGGGTTACGCCCTGCCCCATGCCATCCTCCGTCTGGACTTGGCTGGCCGTGACCTGACTGACTACCTCATGAAGATCCTGACCGAGAGAGGCTACAGCTTCACCACCACAGCTGAGAGGGAAATTGTCCGTGACATCAAGGAGAAGCTCTGCTATGTGGCCCTTGACTTTGAGCAGGAGATGGGCACCGCTGCTTCCTCCTCCTCCCTGGAGAAGAGCTACGAGCTGCCTGACGGACAGGTCATCACCATTGGCAATGAGAGGTTCAGGTGCCCAGAGGCCCTGTTCCAGCCATCCTTCTTGGGTATGGAATCTTGCGGTATCCACGAGACCACCTTCAACTCCATCATGAAGTGTGACGTCGACATCCGTAAGGACCTGTATGCCAACACTGTATTGTCTGGTGGTACCACCATGTACCCTGGCATTGCTGACAGGATGCAGAAGGAGATCACATCCCTGGCCCCTAGCACAATGAAGATCAAGATCATTGCCCCACCTGAGCGTAAATACTCTGTCTGGATCGGAGGCTCCATCCTGGCCTCCCTGTCCACCTTCCAGCAGATGTGGATTAGCAAGCAGGAGTACGATGAGTCTGGACCATCCATCGTCCACCGCAAATGCTTCTAAACGGACTGTTACCACTTCACGCCGACTCAAACTGCGCAGAGAAACTTCAAACGACAACATTGGCATGGCTTTTGTTATTTTTGGCGCTTGACTCAGGATCTAAAAACTGGAACGGTGAAGGTGACGGCAATGTTTTTTGGCAAATAAGCATCCCCGAAGTTCTACAATGCATCTGAGGACtccatgttttgttttctttagtcATTCCAAATGTTTGTTAAATGCATTGTTCCGAAACTTATTTGCCTCTATGAAGGCTGCCCAGTAATTGGGAGCATACTTAACATTGTAGTATTGTATGTAAATTATGTAACAAAACAATGTCTGGGTTTTTGTACTTTTCAGCCTTAAAATCttgggtttatttttttttctttgttccaaAAAAACGAAGCTTTACCATTCAAGATGTAAAGGTTTCCATTCCCCCTGGGCATATTGTAAAAGCTGTGTGGAACGTGGCGGTGCCAGACATTTGGTGGGGCCAACCTGTACACTGACTAATTCAATTCCAATAAAAGTGCACATGTAAGACATCCTAA
>TCONS_00051937
AGTTCAGCCATGGATGATGAAATTGCCGCACTGGTTGTTGACAACGGATCCGGTATGTGCAAAGCCGGATTCGCTGGAGATGATGCTCCCCGTGCTGTCTTCCCATCCATCGTGGGTCGCCCCAGACATCAGGGTGTCATGGTTGGTATGGGACAGAAAGACAGCTACGTTGGTGATGAGGCTCAGAGCAAGAGAGGTATCCTGACCCTGAAGTACCCCATCGAGCACGGTATTGTCACCAACTGGGATGATATGGAGAAGATCTGGCATCACACCTTCTACAACGAGCTGCGTGTTGCCCCAGAGGAGCACCCCGTCCTGCTCACAGAGGCCCCCCTGAACCCCAAGGCCAACAGGGAAAAGATGACACAGATCATGTTCGAGACCTTCAACACCCCCGCCATGTACGTTGCCATCCAGGCTGTGCTGTCCCTGTATGCCTCCGGTCGTACCACTGGTATCGTGATGGACTCTGGTGATGGTGTCACCCACACTGTGCCCATCTACGAGGGTTACGCCCTGCCCCATGCCATCCTCCGTCTGGACTTGGCTGGCCGTGACCTGACTGACTACCTCATGAAGATCCTGACCGAGAGAGGCTACAGCTTCACCACCACAGCTGAGAGGGAAATTGTCCGTGACATCAAGGAGAAGCTCTGCTATGTGGCCCTTGACTTTGAGCAGGAGATGGGCACCGCTGCTTCCTCCTCCTCCCTGGAGAAGAGCTACGAGCTGCCTGACGGACAGGTCATCACCATTGGCAATGAGAGGTTCAGGTGCCCAGAGGCCCTGTTCCAGCCATCCTTCTTGGGTATGGAATCTTGCGGTATCCACGAGACCACCTTCAACTCCATCATGAAGTGTGACGTCGACATCCGTAAGGACCTGTATGCCAACACTGTATTGTCTGGTGGTACCACCATGTACCCTGGCATTGCTGACAGGATGCAGAAGGAGATCACATCCCTGGCCCCTAGCACAATGAAGATCAAGATCATTGCCCCACCTGAGCGTAAATACTCTGTCTGGATCGGAGGCTCCATCCTGGCCTCCCTGTCCACCTTCCAGCAGATGTGGATTAGCAAGCAGGAGTACGATGAGTCTGGACCATCCATCGTCCACCGCAAATGCTTCTAAACGGACTG
>TCONS_00051938
ACTTTGAGCTCCTCCACACGCAGCTAGTGCGGAATATCATCTGCTTGTAACCCATTCTCTTAAGTCGACAACCCCCCAAACCCAAGGCCAACAGGGAAAAGATGACACAGATCATGTTCGAGACCTTCAACACCCCCGCCATGTACGTTGCCATCCAGGCTGTGCTGTCCCTGTATGCCTCCGGTCGTACCACTGGTATCGTGATGGACTCTGGTGATGGTGTCACCCACACTGTGCCCATCTACGAGGGTTACGCCCTGCCCCATGCCATCCTCCGTCTGGACTTGGCTGGCCGTGACCTGACTGACTACCTCATGAAGATCCTGACCGAGAGAGGCTACAGCTTCACCACCACAGCTGAGAGGGAAATTGTCCGTGACATCAAGGAGAAGCTCTGCTATGTGGCCCTTGACTTTGAGCAGGAGATGGGCACCGCTGCTTCCTCCTCCTCCCTGGAGAAGAGCTACGAGCTGCCTGACGGACAGGTCATCACCATTGGCAATGAGAGGTTCAGGTGCCCAGAGGCCCTGTTCCAGCCATCCTTCTTGGGTATGGAATCTTGCGGTATCCACGAGACCACCTTCAACTCCATCATGAAGTGTGACGTCGACATCCGTAAGGACCTGTATGCCAACACTGTATTGTCTGGTGGTACCACCATGTACCCTGGCATTGCTGACAGGATGCAGAAGGAGATCACATCCCTGGCCCCTAGCACAATGAAGATCAA
>TCONS_00051939
CACTTTGAGCTCCTCCACACGCAGCTAGTGCGGAATATCATCTGCTTGTAACCCATTCTCTTAAGTCGACAACCCCCCAAACCCAAGTTCAGCCATGGATGATGAAATTGCCGCACTGGTTGTTGACAACGGATCCGGTATGTGCAAAGCCGGATTCGCTGGAGATGATGCTCCCCGTGCTGTCTTCCCATCCATCGTGGGTCGCCCCAGACATCAGGGTGTCATGGTTGGTATGGGACAGAAAGACAGCTACGTTGGTGATGAGGCTCAGAGCAAGAGAGGTATCCTGACCCTGAAGTACCCCATCGAGCACGGTATTGTCACCAACTGGGATGATATGGAGAAGATCTGGCATCACACCTTCTACAACGAGCTGCGTGTTGCCCCAGAGGAGCACCCCGTCCTGCTCACAGAGGCCCCCCTGAACCCCAAGGCCAACAGGGAAAAGATGACACAGGCTTTGTGTCCTCTGAGCTCCTGAGTTTCTCCTCTTCTCAGCAGATCATGTTCGAGACCTTCAACACCCCCGCCATGTACGTTGCCATCCAGGCTGTGCTGTCCCTGTATGCCTCCGGTCGTACCACTGGTATCGTGATGGACTCTGGTGATGGTGTCACCCACACTGTGCCCATCTACGAGGGTTACGCCCTGCCCCATGCCATCCTCCGTCTGGACTTGGCTGGCCGTGACCTGACTGACTACCTCATGAAGATCCTGACCGAGAGAGGCTACAGCTTCACCACCACAGCTGAGAGGGAAATTGTCCGTGACATCAAGGAGAAGCTCTGCTATGTGGCCCTTGACTTTGAGCAGGAGATGGGCACCGCTGCTTCCTCCTCCTCCCTGGAGAAGAGCTACGAGCTGCCTGACGGACAGGTCATCACCATTGGCAATGAGAGGTTCAGGTGCCCAGAGGCCCTGTTCCAGCCATCCTTCTTGGGTATGGAATCTTGCGGTATCCACGAGACCACCTTCAACTCCATCATGAAGTGTGACGTCGACATCCGTAAGGACCTGTATGCCAACACTGTATTGTCTGGTGGTACCACCATGTACCCTGGCATTGCTGACAGGATGCAGAAGGAGATCACATCCCTGGCCCCTAGCACAATGAAGAT
>TCONS_00051940
TTGAGCTCCTCCACACGCAGCTAGTGCGGAATATCATCTGCTTGTAACCCATTCTCTTAAGTCGACAACCCCCCAAACCCAAGTTCAGCCATGGATGATGAAATTGCCGCACTGGTTGTTGACAACGGATCCGGTATGTGCAAAGCCGGATTCGCTGGAGATGATGCTCCCCGTGCTGTCTTCCCATCCATCGTGGGTCGCCCCAGACATCAGGTGAGAAGACCGATTAGTTTGATTCTGACCCAAACTGAGAACTTTCTCAAGTAGTTCACAAAATGTAACGCTTGTGTCCTTGCATTACAGGGTGTCATGGTTGGTATGGGACAGAAAGACAGCTACGTTGGTGATGAGGCTCAGAGCAAGAGAGGTATCCTGACCCTGAAGTACCCCATCGAGCACGGTATTGTCACCAACTGGGATGATATGGAGAAGATCTGGCATCACACCTTCTACAACGAGCTGCGTGTTGCCCCAGAGGAGCACCCCGTCCTGCTCACAGAGGCCCCCCTGAACCCCAAGGCCAACAGGGAAAAGATGACACAGATCATGTTCGAGACCTTCAACACCCCCGCCATGTACGTTGCCATCCAGGCTGTGCTGTCCCTGTATGCCTCCGGTCGTACCACTGGTATCGTGATGGACTCTGGTGATGGTGTCACCCACACTGTGCCCATCTACGAGGGTTACGCCCTGCCCCATGCCATCCTCCGTCTGGACTTGGCTGGCCGTGACCTGACTGACTACCTCATGAAGATCCTGACCGAGAGAGGCTACAGCTTCACCACCACAGCTGAGAGGGAAATTGTCCGTGACATCAAGGAGAAGCTCTGCTATGTGGCCCT
>TCONS_00051941
TTTGAGCTCCTCCACACGCAGCTAGTGCGGAATATCATCTGCTTGTAACCCATTCTCTTAAGTCGACAACCCCCCAAACCCAAGTTCAGCCATGGATGATGAAATTGCCGCACTGGTTGTTGACAACGGATCCGGTATGTGCAAAGCCGGATTCGCTGGAGATGATGCTCCCCGTGCTGTCTTCCCATCCATCGTGGGTCGCCCCAGACATCAGGGTGTCATGGTTGGTATGGGACAGAAAGACAGCTACGTTGGTGATGAGGCTCAGAGCAAGAGAGGTATCCTGACCCTGAAGTACCCCATCGAGCACGGTATTGTCACCAACTGGGATGATATGGAGAAGATCTGGCATCACACCTTCTACAACGAGCTGCGTGTTGCCCCAGAGGAGCACCCCGTCCTGCTCACAGAGGCCCCCCTGAACCCCAAGGCCAACAGGGAAAAGATGACACAGGCTTTGTGTCCTCTGAGCTCCTGAGTTTCTCCTCTTCTCAGCAGGTTATCCAAACTTTGCCTGCCTGTTTTGCAGTTCCTTCTGCACTTTTTGTTCCTTTACTCTGGATTTCTGACTAACCCCTGCATGGAAGTGTGGATTGTGTGCTGCAGACACTTGAACATCCAGTTAACGTCTCCATCCTCTCTTTGCAGATCATGTTCGAGACCTTCAACACCCCCGCCATGTACGTTGCCATCCAGGCTGTGCTGTCCCTGTATGCCTCCGGTCGTACCACTGGTATCGTGATGGACTCTGGTGATGGTGTCACCCACACTGTGCCCATCTACGAGGGTTACGCCCTGCCCCATGCCATCCTCCGTCTGGACTTGGCTGGCCGTGACCTGACTGACTACCTCATGAAGATCCTGACCGAGAGAGGCTACAGCTTCACCACCACAGCTGAGAGGGAAATTGTCCGTGACATCAAGGAGAAGCTCTGCTATGTGGCCCT
>TCONS_00051942
TTGAGCTCCTCCACACGCAGCTAGTGCGGAATATCATCTGCTTGTAACCCATTCTCTTAAGTCGACAACCCCCCAAACCCAAGTTCAGCCATGGATGATGAAATTGCCGCACTGGTTGTTGACAACGGATCCGGTATGTGCAAAGCCGGATTCGCTGGAGATGATGCTCCCCGTGCTGTCTTCCCATCCATCGTGGGTCGCCCCAGACATCAGGGTGTCATGGTTGGTATGGGACAGAAAGACAGCTACGTTGGTGATGAGGCTCAGAGCAAGAGAGGTATCCTGACCCTGAAGTACCCCATCGAGCACGGTATTGTCACCAACTGGGATGATATGGAGAAGATCTGGCATCACACCTTCTACAACGAGCTGCGTGTTGCCCCAGAGGAGCACCCCGTCCTGCTCACAGAGGCCCCCCTGAACCCCAAGGCCAACAGGGAAAAGATGACACAGGTTGGTTTTTGTCTTGCAAACCGTTCTCTGAAGCCTCTCGTCTGTCCCGTTTCCTCATTTTAAGTTCTCCTGTTCATTGGTTCACTTCCTCCAGGCTTTGTGTCCTCTGAGCTCCTGAGTTTCTCCTCTTCTCAGCAGGTTATCCAAACTTTGCCTGCCTGTTTTGCAGTTCCTTCTGCACTTTTTGTTCCTTTACTCTGGATTTCTGACTAACCCCTGCATGGAAGTGTGGATTGTGTGCTGCAGACACTTGAACATCCAGTTAACGTCTCCATCCTCTCTTTGCAGATCATGTTCGAGACCTTCAACACCCCCGCCATGTACGTTGCCATCCAGGCTGTGCTGTCCCTGTATGCCTCCGGTCGTACCACTGGTATCGTGATGGACTCTGGTGATGGTGTCAC

Function

symbol description
actb2 Predicted to be a structural constituent of postsynaptic actin cytoskeleton. Predicted to be located in several cellular components, including cytoskeleton; dense body; and focal adhesion. Predicted to be active in actin filament. Is expressed in several structures, including blastomere; brain; eye; musculature system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Baraitser-Winter syndrome and autosomal dominant nonsyndromic deafness 20. Orthologous to several human genes including ACTB (actin beta).

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005884 actin filament cellular_component
GO:0005886 plasma membrane cellular_component
GO:0097433 dense body cellular_component
GO:0005925 focal adhesion cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0098973 structural constituent of postsynaptic actin cytoskeleton molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-000329-3 Predicted to be a structural constituent of postsynaptic actin cytoskeleton. Predicted to be located in several cellular components, including cytoskeleton; dense body; and focal adhesion. Predicted to be active in actin filament. Is expressed in several structures, including blastomere; brain; eye; musculature system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Baraitser-Winter syndrome and autosomal dominant nonsyndromic deafness 20. Orthologous to several human genes including ACTB (actin beta).

Ensembl:

ensembl_id ENSDARG00000037870

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051935 False 1762 mRNA 0.50 6 40526107 40529782
TCONS_00051936 False 1789 mRNA 0.50 6 40526107 40529804
TCONS_00051937 False 1145 mRNA 0.55 5 40526641 40528333
TCONS_00051938 False 730 processed_transcript 0.55 4 40526879 40529778
TCONS_00051939 False 1118 nonsense_mediated_decay 0.55 6 40526882 40529779
TCONS_00051940 False 842 lncRNA 0.54 3 40527285 40529775
TCONS_00051941 False 947 lncRNA 0.54 4 40527285 40529776
TCONS_00051942 True 857 lncRNA 0.52 3 40527468 40529775

Neighbor

gene id symbol gene type direction distance location
XLOC_026666 NA coding downstream 120721 40396063 ~ 40405386 (-)
XLOC_026665 atp5mf coding downstream 224640 40296785 ~ 40301467 (-)
XLOC_026664 pdap1b coding downstream 241363 40277704 ~ 40284744 (-)
XLOC_026663 shmt1 coding downstream 250036 40260929 ~ 40276071 (-)
XLOC_026662 top3a coding downstream 271473 40235288 ~ 40254634 (-)
XLOC_026668 rnf216 coding upstream 70966 40600770 ~ 40664913 (-)
XLOC_026669 uts2r5 coding upstream 150127 40679931 ~ 40681001 (-)
XLOC_026670 smurf1 coding upstream 160408 40690212 ~ 40768548 (-)
XLOC_026671 NA coding upstream 244614 40774418 ~ 40777723 (-)
XLOC_026672 wipi2 coding upstream 291853 40821657 ~ 40837218 (-)
XLOC_026659 NA non-coding downstream 344453 40180136 ~ 40181654 (-)
XLOC_026657 BX649547.1 non-coding downstream 437306 40088685 ~ 40088801 (-)
XLOC_026654 BX649356.3 non-coding downstream 568633 39957358 ~ 39957474 (-)
XLOC_026653 BX649356.2 non-coding downstream 574580 39945865 ~ 39951527 (-)
XLOC_026680 CR769786.1 non-coding upstream 782218 41312022 ~ 41312143 (-)
XLOC_026681 BX537310.2 non-coding upstream 866319 41396123 ~ 41512210 (-)
XLOC_026687 NA non-coding upstream 1653549 42183353 ~ 42205112 (-)
XLOC_026688 BX005183.3 non-coding upstream 1682906 42212710 ~ 42216013 (-)

Expression


Co-expression Network