Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_026687 |
| gene name | NA |
| gene type | non-coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 42183353 ~ 42205112 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016070 | RNA metabolic process | biological_process |
| GO:0016072 | rRNA metabolic process | biological_process |
| GO:0006364 | rRNA processing | biological_process |
| GO:0090304 | nucleic acid metabolic process | biological_process |
| GO:0006139 | nucleobase-containing compound metabolic process | biological_process |
| GO:0006725 | cellular aromatic compound metabolic process | biological_process |
| GO:1901360 | organic cyclic compound metabolic process | biological_process |
| GO:0010467 | gene expression | biological_process |
| GO:0044238 | primary metabolic process | biological_process |
| GO:0042254 | ribosome biogenesis | biological_process |
| GO:0043170 | macromolecule metabolic process | biological_process |
| GO:0034641 | cellular nitrogen compound metabolic process | biological_process |
| GO:0034660 | ncRNA metabolic process | biological_process |
| GO:0046483 | heterocycle metabolic process | biological_process |
| GO:0044428 | obsolete nuclear part | cellular_component |
| GO:0070013 | intracellular organelle lumen | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0031974 | membrane-enclosed lumen | cellular_component |
| GO:0031981 | nuclear lumen | cellular_component |
| GO:0043227 | membrane-bounded organelle | cellular_component |
| GO:0043229 | intracellular organelle | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0043233 | organelle lumen | cellular_component |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0097159 | organic cyclic compound binding | molecular_function |
| GO:1901363 | heterocyclic compound binding | molecular_function |
| ensembl_id | ENSDARG00000097382 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00053085 | False | 1947 | lncRNA | 0.31 | 2 | 42183353 | 42189025 |
| TCONS_00053086 | False | 2032 | lncRNA | 0.31 | 3 | 42183353 | 42191283 |
| TCONS_00053089 | False | 3326 | lncRNA | 0.36 | 10 | 42183353 | 42200050 |
| TCONS_00053090 | False | 3015 | lncRNA | 0.36 | 10 | 42183353 | 42200050 |
| TCONS_00053088 | False | 2405 | lncRNA | 0.33 | 7 | 42183353 | 42200050 |
| TCONS_00053087 | False | 3799 | lncRNA | 0.37 | 10 | 42183353 | 42200050 |
| TCONS_00053091 | False | 3038 | lncRNA | 0.36 | 11 | 42183353 | 42200193 |
| TCONS_00053092 | False | 4412 | lncRNA | 0.38 | 8 | 42183353 | 42200246 |
| TCONS_00053093 | False | 4056 | lncRNA | 0.38 | 12 | 42183353 | 42203600 |
| TCONS_00053096 | False | 3317 | lncRNA | 0.37 | 13 | 42183353 | 42205112 |
| TCONS_00053095 | False | 3303 | lncRNA | 0.37 | 13 | 42183353 | 42205112 |
| TCONS_00053094 | False | 4241 | lncRNA | 0.38 | 13 | 42183353 | 42205112 |
| TCONS_00051978 | False | 907 | lncRNA | 0.36 | 3 | 42184493 | 42191422 |
| TCONS_00051979 | True | 1037 | lncRNA | 0.42 | 7 | 42194210 | 42203605 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_026686 | nudt1 | coding | downstream | 57698 | 42121166 ~ 42125655 (-) |
| XLOC_026685 | ttyh3a | coding | downstream | 96705 | 41955358 ~ 42086648 (-) |
| XLOC_026684 | grifin | coding | downstream | 387436 | 41784542 ~ 41795917 (-) |
| XLOC_026683 | BX324110.1 | coding | downstream | 467663 | 41629605 ~ 41715690 (-) |
| XLOC_026682 | si:ch211-222n22.1 | coding | downstream | 647592 | 41531279 ~ 41535761 (-) |
| XLOC_026688 | BX005183.3 | coding | upstream | 7598 | 42212710 ~ 42216013 (-) |
| XLOC_026689 | NA | coding | upstream | 166672 | 42371784 ~ 42373599 (-) |
| XLOC_026690 | NA | coding | upstream | 343832 | 42548944 ~ 42746784 (-) |
| XLOC_026691 | CABZ01079183.1 | coding | upstream | 660971 | 42866083 ~ 42866200 (-) |
| XLOC_026692 | BX908797.1 | coding | upstream | 713031 | 42918143 ~ 42968544 (-) |
| XLOC_026681 | BX537310.2 | non-coding | downstream | 671143 | 41396123 ~ 41512210 (-) |
| XLOC_026680 | CR769786.1 | non-coding | downstream | 871210 | 41312022 ~ 41312143 (-) |
| XLOC_026671 | NA | non-coding | downstream | 1405630 | 40774418 ~ 40777723 (-) |
| XLOC_026666 | NA | non-coding | downstream | 1777967 | 40396063 ~ 40405386 (-) |
| XLOC_026659 | NA | non-coding | downstream | 2001699 | 40180136 ~ 40181654 (-) |
| XLOC_026694 | NA | non-coding | upstream | 819709 | 43024821 ~ 43026735 (-) |
